RNA–Protein interactions for RNA: ENST00000547654.5

SCAF11-210, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 2

Gene SCAF11, Length 416 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-210ENST00000547654 DPYSL4O14531 572 aa10.88□□□□□ -0.67
SCAF11-210ENST00000547654 PROX2Q3B8N5 592 aa10.88□□□□□ -0.67
SCAF11-210ENST00000547654 RABGEF1Q9UJ41 708 aa10.88□□□□□ -0.67
SCAF11-210ENST00000547654 COL9A1P20849 921 aa10.87□□□□□ -0.67
SCAF11-210ENST00000547654 CAMK2BQ13554 666 aa10.87□□□□□ -0.67
SCAF11-210ENST00000547654 ANKK1Q8NFD2 765 aa10.87□□□□□ -0.67
SCAF11-210ENST00000547654 BBXQ8WY36 941 aaPredicted RBP10.86□□□□□ -0.67
SCAF11-210ENST00000547654 EPAS1Q99814 870 aa10.85□□□□□ -0.67
SCAF11-210ENST00000547654 Q6ZNB5 142 aa10.83□□□□□ -0.68
SCAF11-210ENST00000547654 A0A0G2JS52 829 aa10.81□□□□□ -0.68
SCAF11-210ENST00000547654 IFFO2Q5TF58 517 aa10.81□□□□□ -0.68
SCAF11-210ENST00000547654 LAPTM4BQ86VI4 370 aa10.81□□□□□ -0.68
SCAF11-210ENST00000547654 RBM33Q96EV2 1170 aaKnown RBP10.81□□□□□ -0.68
SCAF11-210ENST00000547654 C6orf132Q5T0Z8 1188 aa10.8□□□□□ -0.68
SCAF11-210ENST00000547654 DDX12PQ92771 950 aa10.8□□□□□ -0.68
SCAF11-210ENST00000547654 KIAA1468Q9P260 1216 aa10.8□□□□□ -0.68
SCAF11-210ENST00000547654 BCAMP50895 628 aa10.78□□□□□ -0.68
SCAF11-210ENST00000547654 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.78□□□□□ -0.68
SCAF11-210ENST00000547654 SEPT9Q9UHD8 586 aaPredicted RBP10.77□□□□□ -0.69
SCAF11-210ENST00000547654 NBR1Q14596 966 aa10.76□□□□□ -0.69
SCAF11-210ENST00000547654 SPRYD3Q8NCJ5 442 aa10.76□□□□□ -0.69
SCAF11-210ENST00000547654 ZFRQ96KR1 1074 aaKnown RBP10.76□□□□□ -0.69
SCAF11-210ENST00000547654 SOWAHBA6NEL2 793 aa10.75□□□□□ -0.69
SCAF11-210ENST00000547654 TRIM6-TRIM34B2RNG4 842 aa10.75□□□□□ -0.69
SCAF11-210ENST00000547654 ONECUT3O60422 494 aaPredicted RBP10.75□□□□□ -0.69
SCAF11-210ENST00000547654 MAP3K7O43318 606 aa10.74□□□□□ -0.69
SCAF11-210ENST00000547654 PDIA6Q15084 440 aa10.74□□□□□ -0.69
SCAF11-210ENST00000547654 NYAP1Q6ZVC0 841 aa10.73□□□□□ -0.69
SCAF11-210ENST00000547654 EN1Q05925 392 aaPredicted RBP10.72□□□□□ -0.69
SCAF11-210ENST00000547654 FAM98CQ17RN3 349 aaKnown RBP10.72□□□□□ -0.69
SCAF11-210ENST00000547654 SPDYE16A6NNV3 312 aaPredicted RBP10.71□□□□□ -0.69
SCAF11-210ENST00000547654 ITGBL1O95965 494 aaPredicted RBP10.7□□□□□ -0.7
SCAF11-210ENST00000547654 LRCH3Q96II8 777 aa10.7□□□□□ -0.7
SCAF11-210ENST00000547654 LCE2BO14633 110 aa10.69□□□□□ -0.7
SCAF11-210ENST00000547654 TSR1Q2NL82 804 aaKnown RBP10.69□□□□□ -0.7
SCAF11-210ENST00000547654 WBP1LQ9NX94 342 aa10.69□□□□□ -0.7
SCAF11-210ENST00000547654 CDKN2AIPQ9NXV6 580 aaPredicted RBP10.69□□□□□ -0.7
SCAF11-210ENST00000547654 E2F4Q16254 413 aa10.68□□□□□ -0.7
SCAF11-210ENST00000547654 PACS2Q86VP3 889 aa10.68□□□□□ -0.7
SCAF11-210ENST00000547654 WDR70Q9NW82 654 aa10.68□□□□□ -0.7
SCAF11-210ENST00000547654 HPS5Q9UPZ3 1129 aa10.67□□□□□ -0.7
SCAF11-210ENST00000547654 CFAP44Q96MT7 982 aa10.66□□□□□ -0.7
SCAF11-210ENST00000547654 TSR3Q9UJK0 312 aaKnown RBP10.66□□□□□ -0.7
SCAF11-210ENST00000547654 PAXIP1Q6ZW49 1069 aaPredicted RBP10.65□□□□□ -0.7
SCAF11-210ENST00000547654 KCNC4Q03721 635 aa10.64□□□□□ -0.71
SCAF11-210ENST00000547654 TSKSQ9UJT2 592 aa10.64□□□□□ -0.71
SCAF11-210ENST00000547654 GRXCR2A6NFK2 248 aa10.62□□□□□ -0.71
SCAF11-210ENST00000547654 CDCA7LQ96GN5 454 aa10.62□□□□□ -0.71
SCAF11-210ENST00000547654 CERKQ8TCT0 537 aa10.61□□□□□ -0.71
SCAF11-210ENST00000547654 NBPF26B4DH59 902 aa10.6□□□□□ -0.71
SCAF11-210ENST00000547654 PRSS12P56730 875 aa10.6□□□□□ -0.71
SCAF11-210ENST00000547654 ARIH1Q9Y4X5 557 aaPredicted RBP10.59□□□□□ -0.71
SCAF11-210ENST00000547654 SMAPO00193 183 aa10.58□□□□□ -0.72
SCAF11-210ENST00000547654 PPP4CP60510 307 aa10.58□□□□□ -0.72
SCAF11-210ENST00000547654 PRIM1P49642 420 aaKnown RBP10.56□□□□□ -0.72
SCAF11-210ENST00000547654 SAMD7Q7Z3H4 446 aa10.56□□□□□ -0.72
SCAF11-210ENST00000547654 PNMA3Q9UL41 463 aa10.56□□□□□ -0.72
SCAF11-210ENST00000547654 RNF40O75150 1001 aa10.54□□□□□ -0.72
SCAF11-210ENST00000547654 TRAF7Q6Q0C0 670 aa10.54□□□□□ -0.72
SCAF11-210ENST00000547654 CDHR5Q9HBB8 845 aa10.54□□□□□ -0.72
SCAF11-210ENST00000547654 FAM198AQ9UFP1 575 aa10.54□□□□□ -0.72
SCAF11-210ENST00000547654 TATDN2Q93075 761 aa10.53□□□□□ -0.72
SCAF11-210ENST00000547654 OSBPP22059 807 aa10.52□□□□□ -0.73
SCAF11-210ENST00000547654 HDGFP51858 240 aaKnown RBP10.51□□□□□ -0.73
SCAF11-210ENST00000547654 TSHZ2Q9NRE2 1034 aa10.51□□□□□ -0.73
SCAF11-210ENST00000547654 RBM27Q9P2N5 1060 aaKnown RBP10.51□□□□□ -0.73
SCAF11-210ENST00000547654 NUDT18Q6ZVK8 323 aa10.49□□□□□ -0.73
SCAF11-210ENST00000547654 C3orf80F5H4A9 247 aa10.48□□□□□ -0.73
SCAF11-210ENST00000547654 PLCB2Q00722 1185 aa10.47□□□□□ -0.73
SCAF11-210ENST00000547654 MTRQ99707 1265 aa10.46□□□□□ -0.73
SCAF11-210ENST00000547654 IL21Q9HBE4 155 aa10.46□□□□□ -0.73
SCAF11-210ENST00000547654 LAPTM4AQ15012 233 aa10.45□□□□□ -0.74
SCAF11-210ENST00000547654 TJAP1Q5JTD0 557 aa10.45□□□□□ -0.74
SCAF11-210ENST00000547654 NECTIN2Q92692 538 aa10.45□□□□□ -0.74
SCAF11-210ENST00000547654 GFRA3O60609 400 aa10.44□□□□□ -0.74
SCAF11-210ENST00000547654 PADI6Q6TGC4 694 aa10.44□□□□□ -0.74
SCAF11-210ENST00000547654 SLC4A3P48751 1232 aa10.43□□□□□ -0.74
SCAF11-210ENST00000547654 SLF2Q8IX21 1173 aa10.42□□□□□ -0.74
SCAF11-210ENST00000547654 APLP1P51693 650 aa10.41□□□□□ -0.74
SCAF11-210ENST00000547654 SWT1Q5T5J6 900 aaKnown RBP10.4□□□□□ -0.74
SCAF11-210ENST00000547654 TTC13Q8NBP0 860 aa10.4□□□□□ -0.74
SCAF11-210ENST00000547654 ZNF775Q96BV0 537 aaPredicted RBP10.4□□□□□ -0.74
SCAF11-210ENST00000547654 NPDC1Q9NQX5 325 aaPredicted RBP10.39□□□□□ -0.75
SCAF11-210ENST00000547654 ZNF787Q6DD87 383 aa10.38□□□□□ -0.75
SCAF11-210ENST00000547654 PPP1R18Q6NYC8 613 aa10.37□□□□□ -0.75
SCAF11-210ENST00000547654 ZNF516Q92618 1163 aa10.37□□□□□ -0.75
SCAF11-210ENST00000547654 ARHGEF1Q92888 912 aaKnown RBP10.37□□□□□ -0.75
SCAF11-210ENST00000547654 PRKD2Q9BZL6 878 aa10.37□□□□□ -0.75
SCAF11-210ENST00000547654 MLLT3P42568 568 aaPredicted RBP10.35□□□□□ -0.75
SCAF11-210ENST00000547654 COPS2P61201 443 aa10.35□□□□□ -0.75
SCAF11-210ENST00000547654 KCNV2Q8TDN2 545 aa10.35□□□□□ -0.75
SCAF11-210ENST00000547654 GGCXP38435 758 aa10.34□□□□□ -0.75
SCAF11-210ENST00000547654 PRR14Q9BWN1 585 aa10.34□□□□□ -0.75
SCAF11-210ENST00000547654 EIF4ENIF1Q9NRA8 985 aaKnown RBP10.33□□□□□ -0.76
SCAF11-210ENST00000547654 EYA1Q99502 592 aa10.32□□□□□ -0.76
SCAF11-210ENST00000547654 V9GY48 417 aaPredicted RBP10.32□□□□□ -0.76
SCAF11-210ENST00000547654 KDM2AQ9Y2K7 1162 aa10.31□□□□□ -0.76
SCAF11-210ENST00000547654 DNAJB2P25686 324 aa10.3□□□□□ -0.76
SCAF11-210ENST00000547654 NKX2-3Q8TAU0 364 aa10.3□□□□□ -0.76
SCAF11-210ENST00000547654 PTGDRQ13258 359 aa10.29□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms