RNA–Protein interactions for RNA: ENST00000545694.1

SYNE1-239, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 526 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-239ENST00000545694 ZEB1P37275 1124 aaPredicted RBP9.45□□□□□ -0.9
SYNE1-239ENST00000545694 ERBB3P21860 1342 aa9.45□□□□□ -0.9
SYNE1-239ENST00000545694 STK25O00506 426 aa9.44□□□□□ -0.9
SYNE1-239ENST00000545694 FBXO22Q8NEZ5 403 aa9.44□□□□□ -0.9
SYNE1-239ENST00000545694 TAOK2Q9UL54 1235 aa9.44□□□□□ -0.9
SYNE1-239ENST00000545694 FYCO1Q9BQS8 1478 aa9.44□□□□□ -0.9
SYNE1-239ENST00000545694 IQGAP2Q13576 1575 aa9.43□□□□□ -0.9
SYNE1-239ENST00000545694 ZNF608Q9ULD9 1512 aaPredicted RBP9.43□□□□□ -0.9
SYNE1-239ENST00000545694 RIMBP2O15034 1052 aa9.43□□□□□ -0.9
SYNE1-239ENST00000545694 CASKIN1Q8WXD9 1431 aa9.42□□□□□ -0.9
SYNE1-239ENST00000545694 RGL2O15211 777 aa9.42□□□□□ -0.9
SYNE1-239ENST00000545694 PKD2Q13563 968 aa9.42□□□□□ -0.9
SYNE1-239ENST00000545694 MFRPQ9BY79 579 aa9.42□□□□□ -0.9
SYNE1-239ENST00000545694 CFAP43Q8NDM7 1665 aa9.42□□□□□ -0.9
SYNE1-239ENST00000545694 KIAA0586Q9BVV6 1533 aa9.41□□□□□ -0.9
SYNE1-239ENST00000545694 SYNJ2O15056 1496 aa9.41□□□□□ -0.9
SYNE1-239ENST00000545694 TIAM1Q13009 1591 aa9.41□□□□□ -0.9
SYNE1-239ENST00000545694 UGGT2Q9NYU1 1516 aa9.41□□□□□ -0.9
SYNE1-239ENST00000545694 GRIN2AQ12879 1464 aa9.4□□□□□ -0.9
SYNE1-239ENST00000545694 SNAPC4Q5SXM2 1469 aa9.4□□□□□ -0.9
SYNE1-239ENST00000545694 VARS2Q5ST30 1063 aaKnown RBP9.4□□□□□ -0.9
SYNE1-239ENST00000545694 RANGAP1P46060 587 aaPredicted RBP9.39□□□□□ -0.91
SYNE1-239ENST00000545694 GPR153Q6NV75 609 aa9.38□□□□□ -0.91
SYNE1-239ENST00000545694 ARSIQ5FYB1 569 aa9.37□□□□□ -0.91
SYNE1-239ENST00000545694 PCF11O94913 1555 aaKnown RBP9.37□□□□□ -0.91
SYNE1-239ENST00000545694 CCDC18Q5T9S5 1454 aa9.36□□□□□ -0.91
SYNE1-239ENST00000545694 PPARGC1BQ86YN6 1023 aaKnown RBP9.36□□□□□ -0.91
SYNE1-239ENST00000545694 KHSRPQ92945 711 aaKnown RBP eCLIP9.36□□□□□ -0.91
SYNE1-239ENST00000545694 ZSWIM6Q9HCJ5 1215 aa9.36□□□□□ -0.91
SYNE1-239ENST00000545694 FHOD3Q2V2M9 1422 aa9.36□□□□□ -0.91
SYNE1-239ENST00000545694 RRBP1Q9P2E9 1410 aaKnown RBP9.36□□□□□ -0.91
SYNE1-239ENST00000545694 LRRC9Q6ZRR7 1453 aa9.35□□□□□ -0.91
SYNE1-239ENST00000545694 NUP160Q12769 1436 aa9.35□□□□□ -0.91
SYNE1-239ENST00000545694 CHMP7Q8WUX9 453 aaPredicted RBP9.35□□□□□ -0.91
SYNE1-239ENST00000545694 HECW1Q76N89 1606 aa9.34□□□□□ -0.91
SYNE1-239ENST00000545694 KIAA0556O60303 1618 aa9.32□□□□□ -0.92
SYNE1-239ENST00000545694 C2orf72A6NCS6 295 aa9.32□□□□□ -0.92
SYNE1-239ENST00000545694 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP9.32□□□□□ -0.92
SYNE1-239ENST00000545694 CARMIL2Q6F5E8 1435 aa9.31□□□□□ -0.92
SYNE1-239ENST00000545694 CEP170Q5SW79 1584 aa9.3□□□□□ -0.92
SYNE1-239ENST00000545694 KANK4Q5T7N3 995 aaPredicted RBP9.3□□□□□ -0.92
SYNE1-239ENST00000545694 ZNF687Q8N1G0 1237 aa9.3□□□□□ -0.92
SYNE1-239ENST00000545694 CCNB3Q8WWL7 1395 aa9.29□□□□□ -0.92
SYNE1-239ENST00000545694 KIF3CO14782 793 aa9.29□□□□□ -0.92
SYNE1-239ENST00000545694 PPP1R37O75864 691 aa9.29□□□□□ -0.92
SYNE1-239ENST00000545694 P3H3Q8IVL6 736 aa9.29□□□□□ -0.92
SYNE1-239ENST00000545694 EHBP1L1Q8N3D4 1523 aa9.29□□□□□ -0.92
SYNE1-239ENST00000545694 DISP1Q96F81 1524 aa9.29□□□□□ -0.92
SYNE1-239ENST00000545694 SUPT6HQ7KZ85 1726 aaKnown RBP9.28□□□□□ -0.92
SYNE1-239ENST00000545694 LRRIQ1Q96JM4 1722 aa9.27□□□□□ -0.93
SYNE1-239ENST00000545694 MTUS2Q5JR59 1369 aa9.26□□□□□ -0.93
SYNE1-239ENST00000545694 ZNF316A6NFI3 1004 aaPredicted RBP9.26□□□□□ -0.93
SYNE1-239ENST00000545694 RAPGEF6Q8TEU7 1601 aa9.26□□□□□ -0.93
SYNE1-239ENST00000545694 TTBK1Q5TCY1 1321 aaPredicted RBP9.26□□□□□ -0.93
SYNE1-239ENST00000545694 CLSPNQ9HAW4 1339 aa9.26□□□□□ -0.93
SYNE1-239ENST00000545694 EPRSP07814 1512 aaKnown RBP9.26□□□□□ -0.93
SYNE1-239ENST00000545694 CHD1O14646 1710 aa9.25□□□□□ -0.93
SYNE1-239ENST00000545694 TMC2Q8TDI7 906 aa9.25□□□□□ -0.93
SYNE1-239ENST00000545694 JPH4Q96JJ6 628 aa9.25□□□□□ -0.93
SYNE1-239ENST00000545694 NUDT7P0C024 238 aa9.24□□□□□ -0.93
SYNE1-239ENST00000545694 CCER1Q8TC90 406 aaPredicted RBP9.24□□□□□ -0.93
SYNE1-239ENST00000545694 CDK11AQ9UQ88 783 aaPredicted RBP9.24□□□□□ -0.93
SYNE1-239ENST00000545694 ARHGEF11O15085 1522 aa9.23□□□□□ -0.93
SYNE1-239ENST00000545694 ANKRD13DQ6ZTN6 518 aa9.23□□□□□ -0.93
SYNE1-239ENST00000545694 ATP1B4Q9UN42 357 aaPredicted RBP9.23□□□□□ -0.93
SYNE1-239ENST00000545694 SHROOM2Q13796 1616 aa9.23□□□□□ -0.93
SYNE1-239ENST00000545694 RNF166Q96A37 237 aaPredicted RBP9.22□□□□□ -0.93
SYNE1-239ENST00000545694 ACIN1Q9UKV3 1341 aaKnown RBP9.22□□□□□ -0.93
SYNE1-239ENST00000545694 MYT1LQ9UL68 1186 aa9.21□□□□□ -0.94
SYNE1-239ENST00000545694 PCDHGA4Q9Y5G9 962 aa9.21□□□□□ -0.94
SYNE1-239ENST00000545694 PHLDB1Q86UU1 1377 aa9.21□□□□□ -0.94
SYNE1-239ENST00000545694 MYOM3Q5VTT5 1437 aa9.21□□□□□ -0.94
SYNE1-239ENST00000545694 MIA2Q96PC5 1412 aa9.21□□□□□ -0.94
SYNE1-239ENST00000545694 NCOA2Q15596 1464 aa9.21□□□□□ -0.94
SYNE1-239ENST00000545694 FGD6Q6ZV73 1430 aa9.2□□□□□ -0.94
SYNE1-239ENST00000545694 LHX6Q9UPM6 363 aa9.19□□□□□ -0.94
SYNE1-239ENST00000545694 NUP153P49790 1475 aaKnown RBP9.19□□□□□ -0.94
SYNE1-239ENST00000545694 ABCA8O94911 1581 aa9.19□□□□□ -0.94
SYNE1-239ENST00000545694 SLC34A2O95436 690 aa9.18□□□□□ -0.94
SYNE1-239ENST00000545694 ADCY10Q96PN6 1610 aa9.18□□□□□ -0.94
SYNE1-239ENST00000545694 TCOF1Q13428 1488 aaKnown RBP9.17□□□□□ -0.94
SYNE1-239ENST00000545694 PRG4Q92954 1404 aaPredicted RBP9.17□□□□□ -0.94
SYNE1-239ENST00000545694 CHGAP10645 457 aaKnown RBP9.17□□□□□ -0.94
SYNE1-239ENST00000545694 HS6ST3Q8IZP7 471 aa9.17□□□□□ -0.94
SYNE1-239ENST00000545694 ITSN2Q9NZM3 1697 aa9.16□□□□□ -0.94
SYNE1-239ENST00000545694 CLASP1Q7Z460 1538 aa9.16□□□□□ -0.94
SYNE1-239ENST00000545694 TROQ12816 1431 aaPredicted RBP9.16□□□□□ -0.94
SYNE1-239ENST00000545694 AXIN2Q9Y2T1 843 aa9.16□□□□□ -0.94
SYNE1-239ENST00000545694 PTPN23Q9H3S7 1636 aa9.16□□□□□ -0.94
SYNE1-239ENST00000545694 PTPRGP23470 1445 aa9.15□□□□□ -0.94
SYNE1-239ENST00000545694 LSM11P83369 360 aaKnown RBP eCLIP9.15□□□□□ -0.94
SYNE1-239ENST00000545694 CDK13Q14004 1512 aaKnown RBP9.15□□□□□ -0.95
SYNE1-239ENST00000545694 MAGI3Q5TCQ9 1506 aa9.15□□□□□ -0.95
SYNE1-239ENST00000545694 AKNAQ7Z591 1439 aa9.14□□□□□ -0.95
SYNE1-239ENST00000545694 SETD5Q9C0A6 1442 aa9.14□□□□□ -0.95
SYNE1-239ENST00000545694 POTEEQ6S8J3 1075 aa9.14□□□□□ -0.95
SYNE1-239ENST00000545694 PLB1Q6P1J6 1458 aa9.13□□□□□ -0.95
SYNE1-239ENST00000545694 FAM50AQ14320 339 aaKnown RBP9.12□□□□□ -0.95
SYNE1-239ENST00000545694 PLPP6Q8IY26 295 aa9.12□□□□□ -0.95
SYNE1-239ENST00000545694 UACAQ9BZF9 1416 aa9.12□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms