RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 PCF11O94913 1555 aaKnown RBP18.06■□□□□ 0.48
LIMS1-215ENST00000544547 A0A0U1RQG5 324 aaPredicted RBP18.06■□□□□ 0.48
LIMS1-215ENST00000544547 KIF15Q9NS87 1388 aa18.05■□□□□ 0.48
LIMS1-215ENST00000544547 FAM13BQ9NYF5 915 aa18.05■□□□□ 0.48
LIMS1-215ENST00000544547 SMG6Q86US8 1419 aaKnown RBP18.04■□□□□ 0.48
LIMS1-215ENST00000544547 PNISRQ8TF01 805 aaKnown RBP18.04■□□□□ 0.48
LIMS1-215ENST00000544547 GBP4Q96PP9 640 aa18.03■□□□□ 0.48
LIMS1-215ENST00000544547 COG6Q9Y2V7 657 aa18.02■□□□□ 0.48
LIMS1-215ENST00000544547 C14orf37Q86TY3 774 aa18.02■□□□□ 0.47
LIMS1-215ENST00000544547 POLA1P09884 1462 aaPredicted RBP18.01■□□□□ 0.47
LIMS1-215ENST00000544547 PTPRKQ15262 1439 aa18.01■□□□□ 0.47
LIMS1-215ENST00000544547 PANK3Q9H999 370 aa18■□□□□ 0.47
LIMS1-215ENST00000544547 BCL2L13Q9BXK5 485 aa18■□□□□ 0.47
LIMS1-215ENST00000544547 HMGXB3Q12766 1538 aa18■□□□□ 0.47
LIMS1-215ENST00000544547 A0A0G2JS52 829 aa18■□□□□ 0.47
LIMS1-215ENST00000544547 ZMYND15Q9H091 742 aa17.99■□□□□ 0.47
LIMS1-215ENST00000544547 BIVM-ERCC5R4GMW8 1640 aa17.99■□□□□ 0.47
LIMS1-215ENST00000544547 AQRO60306 1485 aaKnown RBP eCLIP17.99■□□□□ 0.472e-8■■■■■ 33.4
LIMS1-215ENST00000544547 CDCA8Q53HL2 280 aa17.98■□□□□ 0.47
LIMS1-215ENST00000544547 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.97■□□□□ 0.47
LIMS1-215ENST00000544547 JPH4Q96JJ6 628 aa17.97■□□□□ 0.47
LIMS1-215ENST00000544547 RWDD1Q9H446 243 aaPredicted RBP17.96■□□□□ 0.47
LIMS1-215ENST00000544547 CFAP53Q96M91 514 aa17.95■□□□□ 0.46
LIMS1-215ENST00000544547 TOPBP1Q92547 1522 aa17.95■□□□□ 0.46
LIMS1-215ENST00000544547 RBM10P98175 930 aaKnown RBP17.94■□□□□ 0.46
LIMS1-215ENST00000544547 MAP3K1Q13233 1512 aa17.94■□□□□ 0.46
LIMS1-215ENST00000544547 CDK11BP21127 795 aaKnown RBP17.94■□□□□ 0.46
LIMS1-215ENST00000544547 PODXL2Q9NZ53 605 aa17.93■□□□□ 0.46
LIMS1-215ENST00000544547 EFCAB5A4FU69 1503 aa17.92■□□□□ 0.46
LIMS1-215ENST00000544547 DDX11L8A8MPP1 907 aa17.92■□□□□ 0.46
LIMS1-215ENST00000544547 TRAK2O60296 914 aa17.92■□□□□ 0.46
LIMS1-215ENST00000544547 PMFBP1Q8TBY8 1022 aa17.92■□□□□ 0.46
LIMS1-215ENST00000544547 CENPJQ9HC77 1338 aaPredicted RBP17.91■□□□□ 0.46
LIMS1-215ENST00000544547 C20orf194Q5TEA3 1177 aa17.91■□□□□ 0.46
LIMS1-215ENST00000544547 MAPK8IP3Q9UPT6 1336 aa17.91■□□□□ 0.46
LIMS1-215ENST00000544547 DNAJC5BQ9UF47 199 aa17.91■□□□□ 0.46
LIMS1-215ENST00000544547 RRP7AQ9Y3A4 280 aaKnown RBP17.91■□□□□ 0.46
LIMS1-215ENST00000544547 DDX49Q9Y6V7 483 aaKnown RBP17.91■□□□□ 0.46
LIMS1-215ENST00000544547 APAF1O14727 1248 aa17.91■□□□□ 0.46
LIMS1-215ENST00000544547 CHMP5Q9NZZ3 219 aa17.9■□□□□ 0.46
LIMS1-215ENST00000544547 ERCC6Q03468 1493 aa17.9■□□□□ 0.46
LIMS1-215ENST00000544547 MRE11P49959 708 aa17.9■□□□□ 0.46
LIMS1-215ENST00000544547 CALD1Q05682 793 aaKnown RBP17.89■□□□□ 0.45
LIMS1-215ENST00000544547 ITPRIPQ8IWB1 547 aa17.89■□□□□ 0.45
LIMS1-215ENST00000544547 CARMIL2Q6F5E8 1435 aa17.89■□□□□ 0.45
LIMS1-215ENST00000544547 NBPF1Q3BBV0 1214 aa17.88■□□□□ 0.45
LIMS1-215ENST00000544547 RRP9O43818 475 aaKnown RBP17.88■□□□□ 0.45
LIMS1-215ENST00000544547 PANK1Q8TE04 598 aa17.88■□□□□ 0.45
LIMS1-215ENST00000544547 U2SURPO15042 1029 aaKnown RBP17.87■□□□□ 0.45
LIMS1-215ENST00000544547 R3HCC1Q9Y3T6 440 aaKnown RBP17.87■□□□□ 0.45
LIMS1-215ENST00000544547 ADAMTS8Q9UP79 889 aa17.87■□□□□ 0.45
LIMS1-215ENST00000544547 FOXD4L5Q5VV16 416 aaPredicted RBP17.86■□□□□ 0.45
LIMS1-215ENST00000544547 FOXD4L4Q8WXT5 416 aaPredicted RBP17.86■□□□□ 0.45
LIMS1-215ENST00000544547 CDK13Q14004 1512 aaKnown RBP17.86■□□□□ 0.45
LIMS1-215ENST00000544547 WASHC2CQ9Y4E1 1318 aa17.86■□□□□ 0.45
LIMS1-215ENST00000544547 ANKRD50Q9ULJ7 1429 aa17.85■□□□□ 0.45
LIMS1-215ENST00000544547 CCDC144AA2RUR9 1427 aa17.84■□□□□ 0.45
LIMS1-215ENST00000544547 ESPNB1AK53 854 aa17.84■□□□□ 0.45
LIMS1-215ENST00000544547 ANKRD30BQ9BXX2 1392 aa17.84■□□□□ 0.45
LIMS1-215ENST00000544547 APBB1O00213 710 aa17.84■□□□□ 0.45
LIMS1-215ENST00000544547 SAFB2Q14151 953 aaKnown RBP eCLIP17.84■□□□□ 0.45
LIMS1-215ENST00000544547 EHBP1L1Q8N3D4 1523 aa17.83■□□□□ 0.45
LIMS1-215ENST00000544547 BRD4O60885 1362 aaPredicted RBP17.83■□□□□ 0.44
LIMS1-215ENST00000544547 CGNL1Q0VF96 1302 aa17.83■□□□□ 0.44
LIMS1-215ENST00000544547 ABCA10Q8WWZ4 1543 aa17.82■□□□□ 0.44
LIMS1-215ENST00000544547 PRG4Q92954 1404 aaPredicted RBP17.82■□□□□ 0.44
LIMS1-215ENST00000544547 PTPN23Q9H3S7 1636 aa17.82■□□□□ 0.44
LIMS1-215ENST00000544547 BCAR3O75815 825 aa17.81■□□□□ 0.44
LIMS1-215ENST00000544547 MORC1Q86VD1 984 aa17.81■□□□□ 0.44
LIMS1-215ENST00000544547 KIAA2012Q0VF49 1180 aa17.81■□□□□ 0.44
LIMS1-215ENST00000544547 C22orf23Q9BZE7 217 aa17.81■□□□□ 0.44
LIMS1-215ENST00000544547 NCOA1Q15788 1441 aa17.81■□□□□ 0.44
LIMS1-215ENST00000544547 DAPK1P53355 1430 aa17.8■□□□□ 0.44
LIMS1-215ENST00000544547 KIAA1211Q6ZU35 1233 aa17.8■□□□□ 0.44
LIMS1-215ENST00000544547 MCM4P33991 863 aa17.79■□□□□ 0.44
LIMS1-215ENST00000544547 CHAF1AQ13111 956 aaPredicted RBP17.79■□□□□ 0.44
LIMS1-215ENST00000544547 MIA2Q96PC5 1412 aa17.79■□□□□ 0.44
LIMS1-215ENST00000544547 PRDM2Q13029 1718 aa17.79■□□□□ 0.44
LIMS1-215ENST00000544547 GRPEL1Q9HAV7 217 aa17.79■□□□□ 0.44
LIMS1-215ENST00000544547 SMC4Q9NTJ3 1288 aa17.79■□□□□ 0.44
LIMS1-215ENST00000544547 PANK2Q9BZ23 570 aa17.78■□□□□ 0.44
LIMS1-215ENST00000544547 CASC1Q6TDU7 716 aa17.78■□□□□ 0.44
LIMS1-215ENST00000544547 SUPT6HQ7KZ85 1726 aaKnown RBP17.78■□□□□ 0.44
LIMS1-215ENST00000544547 EPRSP07814 1512 aaKnown RBP17.78■□□□□ 0.44
LIMS1-215ENST00000544547 PTMSP20962 102 aa17.77■□□□□ 0.44
LIMS1-215ENST00000544547 FOXD4L6Q3SYB3 417 aaPredicted RBP17.77■□□□□ 0.44
LIMS1-215ENST00000544547 FOXD4L3Q6VB84 417 aaPredicted RBP17.77■□□□□ 0.44
LIMS1-215ENST00000544547 NASPP49321 788 aaPredicted RBP17.77■□□□□ 0.44
LIMS1-215ENST00000544547 U2AF1L5P0DN76 240 aaPredicted RBP17.76■□□□□ 0.43
LIMS1-215ENST00000544547 U2AF1Q01081 240 aaKnown RBP eCLIP17.76■□□□□ 0.43
LIMS1-215ENST00000544547 DNMBPQ6XZF7 1577 aa17.76■□□□□ 0.43
LIMS1-215ENST00000544547 PDZRN4Q6ZMN7 1036 aaPredicted RBP17.76■□□□□ 0.43
LIMS1-215ENST00000544547 RRAGDQ9NQL2 400 aaPredicted RBP17.76■□□□□ 0.43
LIMS1-215ENST00000544547 E9PSI1 815 aa17.76■□□□□ 0.43
LIMS1-215ENST00000544547 SKOR2Q2VWA4 1001 aaPredicted RBP17.76■□□□□ 0.43
LIMS1-215ENST00000544547 LMOD2Q6P5Q4 547 aa17.76■□□□□ 0.43
LIMS1-215ENST00000544547 KIAA1107Q9UPP5 1409 aa17.76■□□□□ 0.43
LIMS1-215ENST00000544547 HAP1P54257 671 aaPredicted RBP17.75■□□□□ 0.43
LIMS1-215ENST00000544547 CC2D2AQ9P2K1 1620 aa17.75■□□□□ 0.43
LIMS1-215ENST00000544547 TPM2P07951 284 aa17.75■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms