RNA–Protein interactions for RNA: ENST00000540010.1

TRAF1-202, Transcript of TNF receptor associated factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRAF1, Length 4,303 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF1-202ENST00000540010 CCDC144AA2RUR9 1427 aa13.52□□□□□ -0.24
TRAF1-202ENST00000540010 KIF3BO15066 747 aa13.52□□□□□ -0.25
TRAF1-202ENST00000540010 FANCAO15360 1455 aa13.52□□□□□ -0.25
TRAF1-202ENST00000540010 MRS2Q9HD23 443 aa13.51□□□□□ -0.25
TRAF1-202ENST00000540010 SCAPERQ9BY12 1400 aa13.51□□□□□ -0.25
TRAF1-202ENST00000540010 KANK1Q14678 1352 aa13.49□□□□□ -0.25
TRAF1-202ENST00000540010 SUPT16HQ9Y5B9 1047 aaKnown RBP13.49□□□□□ -0.25
TRAF1-202ENST00000540010 CCDC136Q96JN2 1154 aa13.49□□□□□ -0.25
TRAF1-202ENST00000540010 ARHGEF12Q9NZN5 1544 aa13.49□□□□□ -0.25
TRAF1-202ENST00000540010 WASHC2AQ641Q2 1341 aa13.49□□□□□ -0.25
TRAF1-202ENST00000540010 ADGRL1O94910 1474 aa13.48□□□□□ -0.25
TRAF1-202ENST00000540010 TEX14Q8IWB6 1497 aa13.48□□□□□ -0.25
TRAF1-202ENST00000540010 FAM135AQ9P2D6 1515 aa13.48□□□□□ -0.25
TRAF1-202ENST00000540010 DUOX2Q9NRD8 1548 aa13.47□□□□□ -0.25
TRAF1-202ENST00000540010 USP47Q96K76 1375 aa13.45□□□□□ -0.26
TRAF1-202ENST00000540010 ABCC1P33527 1531 aa13.45□□□□□ -0.26
TRAF1-202ENST00000540010 CD109Q6YHK3 1445 aa13.45□□□□□ -0.26
TRAF1-202ENST00000540010 ANP32EQ9BTT0 268 aa13.45□□□□□ -0.26
TRAF1-202ENST00000540010 CCER2I3L3R5 266 aa13.45□□□□□ -0.26
TRAF1-202ENST00000540010 ERBINQ96RT1 1412 aa13.44□□□□□ -0.26
TRAF1-202ENST00000540010 ROCK2O75116 1388 aaKnown RBP13.44□□□□□ -0.26
TRAF1-202ENST00000540010 CANXP27824 592 aaKnown RBP13.44□□□□□ -0.26
TRAF1-202ENST00000540010 TMC1Q8TDI8 760 aa13.43□□□□□ -0.26
TRAF1-202ENST00000540010 CCDC7Q96M83 1385 aa13.43□□□□□ -0.26
TRAF1-202ENST00000540010 CHGAP10645 457 aaKnown RBP13.43□□□□□ -0.26
TRAF1-202ENST00000540010 GGT6Q6P531 493 aa13.43□□□□□ -0.26
TRAF1-202ENST00000540010 MAST1Q9Y2H9 1570 aa13.43□□□□□ -0.26
TRAF1-202ENST00000540010 EIF5BO60841 1220 aaKnown RBP13.42□□□□□ -0.26
TRAF1-202ENST00000540010 C11orf95C9JLR9 678 aaPredicted RBP13.42□□□□□ -0.26
TRAF1-202ENST00000540010 KDM5DQ9BY66 1539 aa13.42□□□□□ -0.26
TRAF1-202ENST00000540010 KIF7Q2M1P5 1343 aa13.41□□□□□ -0.26
TRAF1-202ENST00000540010 RTEL1-TNFRSF6BF6WH68 1400 aa13.41□□□□□ -0.26
TRAF1-202ENST00000540010 ZBTB47Q9UFB7 747 aaPredicted RBP13.4□□□□□ -0.26
TRAF1-202ENST00000540010 ST20-MTHFSA0A0A6YYL1 179 aa13.4□□□□□ -0.26
TRAF1-202ENST00000540010 PLXNC1O60486 1568 aa13.4□□□□□ -0.26
TRAF1-202ENST00000540010 ARAP3Q8WWN8 1544 aa13.39□□□□□ -0.27
TRAF1-202ENST00000540010 RAPGEF3O95398 923 aa13.38□□□□□ -0.27
TRAF1-202ENST00000540010 CNTLNQ9NXG0 1405 aa13.37□□□□□ -0.27
TRAF1-202ENST00000540010 ATP7AQ04656 1500 aa13.37□□□□□ -0.27
TRAF1-202ENST00000540010 DHX29Q7Z478 1369 aaKnown RBP13.36□□□□□ -0.27
TRAF1-202ENST00000540010 FAM69CQ0P6D2 419 aa13.36□□□□□ -0.27
TRAF1-202ENST00000540010 ABCA9Q8IUA7 1624 aa13.36□□□□□ -0.27
TRAF1-202ENST00000540010 NBPF1Q3BBV0 1214 aa13.35□□□□□ -0.27
TRAF1-202ENST00000540010 ZNF518AQ6AHZ1 1483 aa13.35□□□□□ -0.27
TRAF1-202ENST00000540010 ZFYVE16Q7Z3T8 1539 aa13.34□□□□□ -0.27
TRAF1-202ENST00000540010 WASHC2CQ9Y4E1 1318 aa13.34□□□□□ -0.27
TRAF1-202ENST00000540010 UNC13BO14795 1591 aa13.34□□□□□ -0.27
TRAF1-202ENST00000540010 RALGAPBQ86X10 1494 aa13.33□□□□□ -0.28
TRAF1-202ENST00000540010 PRKRIP1Q9H875 184 aaPredicted RBP13.32□□□□□ -0.28
TRAF1-202ENST00000540010 UHRF1BP1Q6BDS2 1440 aa13.32□□□□□ -0.28
TRAF1-202ENST00000540010 IQGAP3Q86VI3 1631 aa13.31□□□□□ -0.28
TRAF1-202ENST00000540010 PLA2R1Q13018 1463 aa13.31□□□□□ -0.28
TRAF1-202ENST00000540010 SPATA31E1Q6ZUB1 1445 aa13.31□□□□□ -0.28
TRAF1-202ENST00000540010 ARXQ96QS3 562 aa13.3□□□□□ -0.28
TRAF1-202ENST00000540010 A2MP01023 1474 aa13.29□□□□□ -0.28
TRAF1-202ENST00000540010 PRAG1Q86YV5 1406 aa13.29□□□□□ -0.28
TRAF1-202ENST00000540010 ARID4BQ4LE39 1312 aaPredicted RBP13.29□□□□□ -0.28
TRAF1-202ENST00000540010 TMF1P82094 1093 aa13.28□□□□□ -0.28
TRAF1-202ENST00000540010 B4GALNT3Q6L9W6 998 aa13.28□□□□□ -0.28
TRAF1-202ENST00000540010 POGZQ7Z3K3 1410 aa13.28□□□□□ -0.28
TRAF1-202ENST00000540010 RBM19Q9Y4C8 960 aaKnown RBP13.26□□□□□ -0.29
TRAF1-202ENST00000540010 MAGI2Q86UL8 1455 aa13.26□□□□□ -0.29
TRAF1-202ENST00000540010 CFAP74Q9C0B2 1584 aa13.25□□□□□ -0.29
TRAF1-202ENST00000540010 SENP3Q9H4L4 574 aaPredicted RBP13.25□□□□□ -0.29
TRAF1-202ENST00000540010 INO80Q9ULG1 1556 aaPredicted RBP13.25□□□□□ -0.29
TRAF1-202ENST00000540010 STAC3Q96MF2 364 aa13.25□□□□□ -0.29
TRAF1-202ENST00000540010 CCDC184Q52MB2 194 aa13.24□□□□□ -0.29
TRAF1-202ENST00000540010 NEO1Q92859 1461 aa13.24□□□□□ -0.29
TRAF1-202ENST00000540010 ATP10AO60312 1499 aa13.23□□□□□ -0.29
TRAF1-202ENST00000540010 TSHZ2Q9NRE2 1034 aa13.23□□□□□ -0.29
TRAF1-202ENST00000540010 STAG3Q9UJ98 1225 aa13.23□□□□□ -0.29
TRAF1-202ENST00000540010 MLECQ14165 292 aa13.22□□□□□ -0.29
TRAF1-202ENST00000540010 ESF1Q9H501 851 aaKnown RBP13.22□□□□□ -0.29
TRAF1-202ENST00000540010 KDM5CP41229 1560 aa13.22□□□□□ -0.29
TRAF1-202ENST00000540010 CDCA8Q53HL2 280 aa13.21□□□□□ -0.29
TRAF1-202ENST00000540010 MLH3Q9UHC1 1453 aa13.21□□□□□ -0.3
TRAF1-202ENST00000540010 CFAP70Q5T0N1 1121 aa13.21□□□□□ -0.3
TRAF1-202ENST00000540010 NUTM2DQ5VT03 806 aaPredicted RBP13.2□□□□□ -0.3
TRAF1-202ENST00000540010 CC2D1BQ5T0F9 858 aaKnown RBP13.2□□□□□ -0.3
TRAF1-202ENST00000540010 SLC24A1O60721 1099 aa13.2□□□□□ -0.3
TRAF1-202ENST00000540010 PPP4R2Q9NY27 417 aa13.2□□□□□ -0.3
TRAF1-202ENST00000540010 E9PCH4 1651 aa13.19□□□□□ -0.3
TRAF1-202ENST00000540010 TRPM2O94759 1503 aa13.19□□□□□ -0.3
TRAF1-202ENST00000540010 EIF3AQ14152 1382 aaKnown RBP13.19□□□□□ -0.3
TRAF1-202ENST00000540010 HECW2Q9P2P5 1572 aa13.19□□□□□ -0.3
TRAF1-202ENST00000540010 PTPRTO14522 1441 aa13.19□□□□□ -0.3
TRAF1-202ENST00000540010 TET3O43151 1660 aa13.19□□□□□ -0.3
TRAF1-202ENST00000540010 KIDINS220Q9ULH0 1771 aa13.18□□□□□ -0.3
TRAF1-202ENST00000540010 EIF2AK4Q9P2K8 1649 aaKnown RBP13.18□□□□□ -0.3
TRAF1-202ENST00000540010 PANK3Q9H999 370 aa13.18□□□□□ -0.3
TRAF1-202ENST00000540010 RIMBP3CA6NJZ7 1639 aa13.18□□□□□ -0.3
TRAF1-202ENST00000540010 RIMBP3BA6NNM3 1639 aa13.18□□□□□ -0.3
TRAF1-202ENST00000540010 RIMBP3Q9UFD9 1639 aa13.18□□□□□ -0.3
TRAF1-202ENST00000540010 RTN4Q9NQC3 1192 aaKnown RBP13.17□□□□□ -0.3
TRAF1-202ENST00000540010 KTN1Q86UP2 1357 aaKnown RBP13.17□□□□□ -0.3
TRAF1-202ENST00000540010 WDR43Q15061 677 aaKnown RBP eCLIP13.17□□□□□ -0.3
TRAF1-202ENST00000540010 RALBP1Q15311 655 aa13.17□□□□□ -0.3
TRAF1-202ENST00000540010 KNSTRNQ9Y448 316 aa13.17□□□□□ -0.3
TRAF1-202ENST00000540010 ADGRF5Q8IZF2 1346 aa13.17□□□□□ -0.3
TRAF1-202ENST00000540010 GPRASP1Q5JY77 1395 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms