RNA–Protein interactions for RNA: ENST00000539338.6

CACNB1-206, Transcript of calcium voltage-gated channel auxiliary subunit beta 1, humanhuman

TSL 1 (best)

Gene CACNB1, Length 5,308 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CACNB1-206ENST00000539338 SMC4Q9NTJ3 1288 aa18.35■□□□□ 0.53
CACNB1-206ENST00000539338 GOLGA6L4A6NEF3 574 aa18.34■□□□□ 0.53
CACNB1-206ENST00000539338 PIP4K2BP78356 416 aa18.34■□□□□ 0.53
CACNB1-206ENST00000539338 MFAP1P55081 439 aaKnown RBP18.34■□□□□ 0.53
CACNB1-206ENST00000539338 PDE3BQ13370 1112 aa18.33■□□□□ 0.53
CACNB1-206ENST00000539338 KIF15Q9NS87 1388 aa18.33■□□□□ 0.52
CACNB1-206ENST00000539338 PMFBP1Q8TBY8 1022 aa18.32■□□□□ 0.52
CACNB1-206ENST00000539338 MYBBP1AQ9BQG0 1328 aaKnown RBP18.32■□□□□ 0.52
CACNB1-206ENST00000539338 PANK3Q9H999 370 aa18.31■□□□□ 0.52
CACNB1-206ENST00000539338 CENPJQ9HC77 1338 aaPredicted RBP18.31■□□□□ 0.52
CACNB1-206ENST00000539338 PROSER2Q86WR7 435 aaPredicted RBP18.3■□□□□ 0.52
CACNB1-206ENST00000539338 PLIN1O60240 522 aa18.3■□□□□ 0.52
CACNB1-206ENST00000539338 MSNP26038 577 aaKnown RBP18.3■□□□□ 0.52
CACNB1-206ENST00000539338 CALD1Q05682 793 aaKnown RBP18.3■□□□□ 0.52
CACNB1-206ENST00000539338 KLHL34Q8N239 644 aa18.3■□□□□ 0.52
CACNB1-206ENST00000539338 FGD5Q6ZNL6 1462 aa18.29■□□□□ 0.52
CACNB1-206ENST00000539338 G3V3G9 751 aa18.29■□□□□ 0.52
CACNB1-206ENST00000539338 DCAF8Q5TAQ9 597 aa18.29■□□□□ 0.52
CACNB1-206ENST00000539338 RRP7AQ9Y3A4 280 aaKnown RBP18.29■□□□□ 0.52
CACNB1-206ENST00000539338 ANKLE2Q86XL3 938 aa18.29■□□□□ 0.52
CACNB1-206ENST00000539338 CFAP44Q96MT7 982 aa18.28■□□□□ 0.52
CACNB1-206ENST00000539338 GBP4Q96PP9 640 aa18.28■□□□□ 0.52
CACNB1-206ENST00000539338 TRAK1Q9UPV9 953 aa18.27■□□□□ 0.52
CACNB1-206ENST00000539338 HMGXB3Q12766 1538 aa18.27■□□□□ 0.51
CACNB1-206ENST00000539338 TULP1O00294 542 aaPredicted RBP18.27■□□□□ 0.51
CACNB1-206ENST00000539338 CHMP4AQ9BY43 222 aa18.27■□□□□ 0.51
CACNB1-206ENST00000539338 EXOC6Q8TAG9 804 aa18.26■□□□□ 0.51
CACNB1-206ENST00000539338 VGFO15240 615 aaPredicted RBP18.26■□□□□ 0.51
CACNB1-206ENST00000539338 CCDC144AA2RUR9 1427 aa18.25■□□□□ 0.51
CACNB1-206ENST00000539338 USP47Q96K76 1375 aa18.25■□□□□ 0.51
CACNB1-206ENST00000539338 TERF2IPQ9NYB0 399 aa18.25■□□□□ 0.51
CACNB1-206ENST00000539338 NESP48681 1621 aa18.25■□□□□ 0.51
CACNB1-206ENST00000539338 PHLDB1Q86UU1 1377 aa18.25■□□□□ 0.51
CACNB1-206ENST00000539338 GOLGA6L6A8MZA4 724 aa18.25■□□□□ 0.51
CACNB1-206ENST00000539338 WASHC2AQ641Q2 1341 aa18.25■□□□□ 0.51
CACNB1-206ENST00000539338 ZBED9Q6R2W3 1325 aa18.25■□□□□ 0.51
CACNB1-206ENST00000539338 KIAA1211Q6ZU35 1233 aa18.24■□□□□ 0.51
CACNB1-206ENST00000539338 KIF21BO75037 1637 aa18.24■□□□□ 0.51
CACNB1-206ENST00000539338 LAMC3Q9Y6N6 1575 aa18.24■□□□□ 0.51
CACNB1-206ENST00000539338 BCL2L13Q9BXK5 485 aa18.23■□□□□ 0.51
CACNB1-206ENST00000539338 FOXD4L1Q9NU39 408 aa18.22■□□□□ 0.51
CACNB1-206ENST00000539338 RRP1P56182 461 aaKnown RBP18.22■□□□□ 0.51
CACNB1-206ENST00000539338 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.22■□□□□ 0.51
CACNB1-206ENST00000539338 DRC7Q8IY82 874 aa18.21■□□□□ 0.51
CACNB1-206ENST00000539338 SYNJ2O15056 1496 aa18.21■□□□□ 0.51
CACNB1-206ENST00000539338 RAD54L2Q9Y4B4 1467 aa18.21■□□□□ 0.51
CACNB1-206ENST00000539338 PDE4AP27815 886 aa18.21■□□□□ 0.51
CACNB1-206ENST00000539338 SLC4A3P48751 1232 aa18.2■□□□□ 0.5
CACNB1-206ENST00000539338 PSME1Q06323 249 aa18.2■□□□□ 0.5
CACNB1-206ENST00000539338 SLC4A10Q6U841 1118 aa18.2■□□□□ 0.5
CACNB1-206ENST00000539338 CRBNQ96SW2 442 aa18.2■□□□□ 0.5
CACNB1-206ENST00000539338 STK31Q9BXU1 1019 aa18.19■□□□□ 0.5
CACNB1-206ENST00000539338 NRDCO43847 1150 aa18.19■□□□□ 0.5
CACNB1-206ENST00000539338 UACAQ9BZF9 1416 aa18.19■□□□□ 0.5
CACNB1-206ENST00000539338 CHAF1AQ13111 956 aaPredicted RBP18.19■□□□□ 0.5
CACNB1-206ENST00000539338 GTF2E1P29083 439 aaPredicted RBP18.18■□□□□ 0.5
CACNB1-206ENST00000539338 IGF1RP08069 1367 aa18.18■□□□□ 0.5
CACNB1-206ENST00000539338 TOM1O60784 492 aa18.18■□□□□ 0.5
CACNB1-206ENST00000539338 TRIM6-TRIM34B2RNG4 842 aa18.17■□□□□ 0.5
CACNB1-206ENST00000539338 NUTM2FA1L443 756 aa18.17■□□□□ 0.5
CACNB1-206ENST00000539338 GOLGA6L3A6NEY3 463 aa18.16■□□□□ 0.5
CACNB1-206ENST00000539338 CENPQQ7L2Z9 268 aaPredicted RBP18.16■□□□□ 0.5
CACNB1-206ENST00000539338 NOL8Q76FK4 1167 aaKnown RBP18.15■□□□□ 0.5
CACNB1-206ENST00000539338 SNAPC4Q5SXM2 1469 aa18.15■□□□□ 0.5
CACNB1-206ENST00000539338 ELL2O00472 640 aaPredicted RBP18.15■□□□□ 0.5
CACNB1-206ENST00000539338 PTMSP20962 102 aa18.15■□□□□ 0.5
CACNB1-206ENST00000539338 ZNF330Q9Y3S2 320 aaPredicted RBP18.15■□□□□ 0.5
CACNB1-206ENST00000539338 TXNDC2Q86VQ3 553 aa18.14■□□□□ 0.5
CACNB1-206ENST00000539338 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.14■□□□□ 0.49
CACNB1-206ENST00000539338 NUTM2BA6NNL0 878 aaPredicted RBP18.14■□□□□ 0.49
CACNB1-206ENST00000539338 NUTM2EB1AL46 878 aaPredicted RBP18.14■□□□□ 0.49
CACNB1-206ENST00000539338 NUTM2AQ8IVF1 878 aaPredicted RBP18.14■□□□□ 0.49
CACNB1-206ENST00000539338 APAF1O14727 1248 aa18.13■□□□□ 0.49
CACNB1-206ENST00000539338 ZNF644Q9H582 1327 aaPredicted RBP18.13■□□□□ 0.49
CACNB1-206ENST00000539338 HMMRO75330 724 aa18.13■□□□□ 0.49
CACNB1-206ENST00000539338 FAM161AQ3B820 660 aa18.13■□□□□ 0.49
CACNB1-206ENST00000539338 COG6Q9Y2V7 657 aa18.13■□□□□ 0.49
CACNB1-206ENST00000539338 AMPHP49418 695 aa18.12■□□□□ 0.49
CACNB1-206ENST00000539338 FGD6Q6ZV73 1430 aa18.12■□□□□ 0.49
CACNB1-206ENST00000539338 SYNJ1O43426 1573 aa18.12■□□□□ 0.49
CACNB1-206ENST00000539338 CFTRP13569 1480 aa18.11■□□□□ 0.49
CACNB1-206ENST00000539338 E9PSI1 815 aa18.11■□□□□ 0.49
CACNB1-206ENST00000539338 ERICH3Q5RHP9 1530 aa18.11■□□□□ 0.49
CACNB1-206ENST00000539338 KIF7Q2M1P5 1343 aa18.11■□□□□ 0.49
CACNB1-206ENST00000539338 GNL2Q13823 731 aaKnown RBP18.1■□□□□ 0.49
CACNB1-206ENST00000539338 LTV1Q96GA3 475 aaPredicted RBP18.1■□□□□ 0.49
CACNB1-206ENST00000539338 CCDC7Q96M83 1385 aa18.09■□□□□ 0.49
CACNB1-206ENST00000539338 LMOD3Q0VAK6 560 aa18.09■□□□□ 0.49
CACNB1-206ENST00000539338 UBAP1LF5GYI3 381 aa18.09■□□□□ 0.49
CACNB1-206ENST00000539338 PPP1R1BQ9UD71 204 aaPredicted RBP18.09■□□□□ 0.49
CACNB1-206ENST00000539338 ARID3AQ99856 593 aa18.08■□□□□ 0.49
CACNB1-206ENST00000539338 MYOM3Q5VTT5 1437 aa18.07■□□□□ 0.48
CACNB1-206ENST00000539338 CGNL1Q0VF96 1302 aa18.07■□□□□ 0.48
CACNB1-206ENST00000539338 KIAA2012Q0VF49 1180 aa18.07■□□□□ 0.48
CACNB1-206ENST00000539338 FOXD4L5Q5VV16 416 aaPredicted RBP18.07■□□□□ 0.48
CACNB1-206ENST00000539338 ZKSCAN2Q63HK3 967 aa18.07■□□□□ 0.48
CACNB1-206ENST00000539338 FOXD4L4Q8WXT5 416 aaPredicted RBP18.07■□□□□ 0.48
CACNB1-206ENST00000539338 CHMP3Q9Y3E7 222 aa18.07■□□□□ 0.48
CACNB1-206ENST00000539338 ANKRD45Q5TZF3 282 aa18.06■□□□□ 0.48
CACNB1-206ENST00000539338 SYAP1Q96A49 352 aaPredicted RBP18.06■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms