RNA–Protein interactions for RNA: ENST00000538654.5

SNHG1-209, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 2,768 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-209ENST00000538654 PIAS4Q8N2W9 510 aaPredicted RBP11.92□□□□□ -0.5
SNHG1-209ENST00000538654 ZBTB7CA1YPR0 619 aa11.91□□□□□ -0.5
SNHG1-209ENST00000538654 CHIC2Q9UKJ5 165 aa11.91□□□□□ -0.5
SNHG1-209ENST00000538654 LRPPRCP42704 1394 aaKnown RBP11.91□□□□□ -0.5
SNHG1-209ENST00000538654 ROCK1Q13464 1354 aa11.91□□□□□ -0.5
SNHG1-209ENST00000538654 PDE3BQ13370 1112 aa11.9□□□□□ -0.5
SNHG1-209ENST00000538654 BRD4O60885 1362 aaPredicted RBP11.9□□□□□ -0.51
SNHG1-209ENST00000538654 RCAN3Q9UKA8 241 aa11.89□□□□□ -0.51
SNHG1-209ENST00000538654 EXOC6Q8TAG9 804 aa11.89□□□□□ -0.51
SNHG1-209ENST00000538654 KIF15Q9NS87 1388 aa11.88□□□□□ -0.51
SNHG1-209ENST00000538654 KIF14Q15058 1648 aa11.88□□□□□ -0.51
SNHG1-209ENST00000538654 BCORL1Q5H9F3 1711 aa11.88□□□□□ -0.51
SNHG1-209ENST00000538654 BRPF3Q9ULD4 1205 aa11.88□□□□□ -0.51
SNHG1-209ENST00000538654 USP47Q96K76 1375 aa11.87□□□□□ -0.51
SNHG1-209ENST00000538654 MAGI3Q5TCQ9 1506 aa11.87□□□□□ -0.51
SNHG1-209ENST00000538654 MBD5Q9P267 1494 aa11.87□□□□□ -0.51
SNHG1-209ENST00000538654 RAD21O60216 631 aa11.86□□□□□ -0.51
SNHG1-209ENST00000538654 RBM25P49756 843 aaKnown RBP11.86□□□□□ -0.51
SNHG1-209ENST00000538654 KDM5CP41229 1560 aa11.86□□□□□ -0.51
SNHG1-209ENST00000538654 RALBP1Q15311 655 aa11.86□□□□□ -0.51
SNHG1-209ENST00000538654 POLA1P09884 1462 aaPredicted RBP11.86□□□□□ -0.51
SNHG1-209ENST00000538654 FANCD2Q9BXW9 1451 aa11.86□□□□□ -0.51
SNHG1-209ENST00000538654 RAD54L2Q9Y4B4 1467 aa11.86□□□□□ -0.51
SNHG1-209ENST00000538654 FOXD1Q16676 465 aa11.85□□□□□ -0.51
SNHG1-209ENST00000538654 MYBBP1AQ9BQG0 1328 aaKnown RBP11.85□□□□□ -0.51
SNHG1-209ENST00000538654 RSPH6AQ9H0K4 717 aa11.85□□□□□ -0.51
SNHG1-209ENST00000538654 MTMR7Q9Y216 660 aa11.85□□□□□ -0.51
SNHG1-209ENST00000538654 NFKBIBQ15653 356 aa11.84□□□□□ -0.51
SNHG1-209ENST00000538654 BBXQ8WY36 941 aaPredicted RBP11.84□□□□□ -0.51
SNHG1-209ENST00000538654 KCTD17Q8N5Z5 321 aa11.84□□□□□ -0.51
SNHG1-209ENST00000538654 TOPBP1Q92547 1522 aa11.84□□□□□ -0.51
SNHG1-209ENST00000538654 DNMT1P26358 1616 aaKnown RBP11.83□□□□□ -0.52
SNHG1-209ENST00000538654 DAPK1P53355 1430 aa11.83□□□□□ -0.52
SNHG1-209ENST00000538654 NESP48681 1621 aa11.82□□□□□ -0.52
SNHG1-209ENST00000538654 IFNLR1Q8IU57 520 aaPredicted RBP11.82□□□□□ -0.52
SNHG1-209ENST00000538654 FAM43AQ8N2R8 423 aa11.82□□□□□ -0.52
SNHG1-209ENST00000538654 INSRP06213 1382 aa11.81□□□□□ -0.52
SNHG1-209ENST00000538654 FRAT1Q92837 279 aaPredicted RBP11.81□□□□□ -0.52
SNHG1-209ENST00000538654 PUS7Q96PZ0 661 aaKnown RBP11.81□□□□□ -0.52
SNHG1-209ENST00000538654 EPRSP07814 1512 aaKnown RBP11.8□□□□□ -0.52
SNHG1-209ENST00000538654 ZMYM4Q5VZL5 1548 aa11.8□□□□□ -0.52
SNHG1-209ENST00000538654 RALGAPBQ86X10 1494 aa11.8□□□□□ -0.52
SNHG1-209ENST00000538654 CNGB1Q14028 1251 aaPredicted RBP11.79□□□□□ -0.52
SNHG1-209ENST00000538654 E9PCH4 1651 aa11.79□□□□□ -0.52
SNHG1-209ENST00000538654 UHRF1BP1Q6BDS2 1440 aa11.79□□□□□ -0.52
SNHG1-209ENST00000538654 SPRYD3Q8NCJ5 442 aa11.79□□□□□ -0.52
SNHG1-209ENST00000538654 KIAA1107Q9UPP5 1409 aa11.78□□□□□ -0.52
SNHG1-209ENST00000538654 NLRP13Q86W25 1043 aa11.78□□□□□ -0.52
SNHG1-209ENST00000538654 ZFP91Q96JP5 570 aaPredicted RBP11.78□□□□□ -0.52
SNHG1-209ENST00000538654 ABCC5O15440 1437 aa11.77□□□□□ -0.52
SNHG1-209ENST00000538654 PZPP20742 1482 aa11.77□□□□□ -0.52
SNHG1-209ENST00000538654 PLEKHH2Q8IVE3 1493 aa11.77□□□□□ -0.52
SNHG1-209ENST00000538654 ZNF692Q9BU19 519 aaPredicted RBP11.77□□□□□ -0.53
SNHG1-209ENST00000538654 ARHGEF12Q9NZN5 1544 aa11.76□□□□□ -0.53
SNHG1-209ENST00000538654 NEUROD2Q15784 382 aa11.76□□□□□ -0.53
SNHG1-209ENST00000538654 TMED8Q6PL24 325 aaPredicted RBP11.76□□□□□ -0.53
SNHG1-209ENST00000538654 ADGBQ8N7X0 1667 aa11.75□□□□□ -0.53
SNHG1-209ENST00000538654 FGD1P98174 961 aa11.75□□□□□ -0.53
SNHG1-209ENST00000538654 CENPQQ7L2Z9 268 aaPredicted RBP11.75□□□□□ -0.53
SNHG1-209ENST00000538654 FAM161AQ3B820 660 aa11.75□□□□□ -0.53
SNHG1-209ENST00000538654 LAMC3Q9Y6N6 1575 aa11.74□□□□□ -0.53
SNHG1-209ENST00000538654 WDR62O43379 1518 aa11.74□□□□□ -0.53
SNHG1-209ENST00000538654 CRBNQ96SW2 442 aa11.73□□□□□ -0.53
SNHG1-209ENST00000538654 CWC22Q9HCG8 908 aaKnown RBP11.73□□□□□ -0.53
SNHG1-209ENST00000538654 PARD3Q8TEW0 1356 aa11.73□□□□□ -0.53
SNHG1-209ENST00000538654 GAPVD1Q14C86 1478 aa11.73□□□□□ -0.53
SNHG1-209ENST00000538654 SENP3-EIF4A1A0A087X0R7 540 aa11.73□□□□□ -0.53
SNHG1-209ENST00000538654 ZNF326Q5BKZ1 582 aaKnown RBP11.73□□□□□ -0.53
SNHG1-209ENST00000538654 HMGB1P09429 215 aaKnown RBP11.73□□□□□ -0.53
SNHG1-209ENST00000538654 CARD11Q9BXL7 1154 aa11.73□□□□□ -0.53
SNHG1-209ENST00000538654 ZMYND15Q9H091 742 aa11.73□□□□□ -0.53
SNHG1-209ENST00000538654 KDM2BQ8NHM5 1336 aa11.73□□□□□ -0.53
SNHG1-209ENST00000538654 CDK13Q14004 1512 aaKnown RBP11.72□□□□□ -0.53
SNHG1-209ENST00000538654 APBB1O00213 710 aa11.72□□□□□ -0.53
SNHG1-209ENST00000538654 BLMP54132 1417 aaPredicted RBP11.72□□□□□ -0.53
SNHG1-209ENST00000538654 GLIPR1L2Q4G1C9 344 aa11.71□□□□□ -0.54
SNHG1-209ENST00000538654 ZNF592Q92610 1267 aa11.71□□□□□ -0.54
SNHG1-209ENST00000538654 IQGAP2Q13576 1575 aa11.7□□□□□ -0.54
SNHG1-209ENST00000538654 FRAT2O75474 233 aaPredicted RBP11.69□□□□□ -0.54
SNHG1-209ENST00000538654 SLC4A3P48751 1232 aa11.69□□□□□ -0.54
SNHG1-209ENST00000538654 L1TD1Q5T7N2 865 aaKnown RBP11.69□□□□□ -0.54
SNHG1-209ENST00000538654 ADGRL2O95490 1459 aa11.69□□□□□ -0.54
SNHG1-209ENST00000538654 PLIN1O60240 522 aa11.68□□□□□ -0.54
SNHG1-209ENST00000538654 C8orf34Q49A92 452 aa11.68□□□□□ -0.54
SNHG1-209ENST00000538654 AEBP1Q8IUX7 1158 aa11.68□□□□□ -0.54
SNHG1-209ENST00000538654 CDCA7LQ96GN5 454 aa11.68□□□□□ -0.54
SNHG1-209ENST00000538654 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.68□□□□□ -0.54
SNHG1-209ENST00000538654 ZNF526Q8TF50 670 aaPredicted RBP11.68□□□□□ -0.54
SNHG1-209ENST00000538654 ITSN2Q9NZM3 1697 aa11.68□□□□□ -0.54
SNHG1-209ENST00000538654 RGS22Q8NE09 1264 aa11.67□□□□□ -0.54
SNHG1-209ENST00000538654 VIRMAQ69YN4 1812 aaKnown RBP11.67□□□□□ -0.54
SNHG1-209ENST00000538654 CROCC2H7BZ55 1655 aa11.67□□□□□ -0.54
SNHG1-209ENST00000538654 ST20-MTHFSA0A0A6YYL1 179 aa11.67□□□□□ -0.54
SNHG1-209ENST00000538654 TDRD9Q8NDG6 1382 aaKnown RBP11.66□□□□□ -0.54
SNHG1-209ENST00000538654 CAMSAP2Q08AD1 1489 aa11.64□□□□□ -0.55
SNHG1-209ENST00000538654 ANKRD30AQ9BXX3 1397 aa11.64□□□□□ -0.55
SNHG1-209ENST00000538654 DCAF11Q8TEB1 546 aa11.64□□□□□ -0.55
SNHG1-209ENST00000538654 BECN1Q14457 450 aa11.64□□□□□ -0.55
SNHG1-209ENST00000538654 URB2Q14146 1524 aaKnown RBP11.64□□□□□ -0.55
SNHG1-209ENST00000538654 EIF3AQ14152 1382 aaKnown RBP11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms