RNA–Protein interactions for RNA: ENST00000538174.6

PTPRB-203, Transcript of protein tyrosine phosphatase, receptor type B, humanhuman

TSL 1 (best)

Gene PTPRB, Length 2,661 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRB-203ENST00000538174 LRRC9Q6ZRR7 1453 aa10.13□□□□□ -0.79
PTPRB-203ENST00000538174 SAMD9LQ8IVG5 1584 aa10.13□□□□□ -0.79
PTPRB-203ENST00000538174 CDK13Q14004 1512 aaKnown RBP10.13□□□□□ -0.79
PTPRB-203ENST00000538174 CDK11AQ9UQ88 783 aaPredicted RBP10.12□□□□□ -0.79
PTPRB-203ENST00000538174 KDM5DQ9BY66 1539 aa10.12□□□□□ -0.79
PTPRB-203ENST00000538174 CAMSAP2Q08AD1 1489 aa10.11□□□□□ -0.79
PTPRB-203ENST00000538174 ARHGAP5Q13017 1502 aa10.11□□□□□ -0.79
PTPRB-203ENST00000538174 RTEL1-TNFRSF6BF6WH68 1400 aa10.11□□□□□ -0.79
PTPRB-203ENST00000538174 CLTCQ00610 1675 aaKnown RBP10.1□□□□□ -0.79
PTPRB-203ENST00000538174 MAP3K1Q13233 1512 aa10.1□□□□□ -0.79
PTPRB-203ENST00000538174 CDK12Q9NYV4 1490 aaPredicted RBP10.1□□□□□ -0.79
PTPRB-203ENST00000538174 NPM2Q86SE8 214 aaKnown RBP10.1□□□□□ -0.79
PTPRB-203ENST00000538174 VPS8Q8N3P4 1428 aa10.09□□□□□ -0.79
PTPRB-203ENST00000538174 IQGAP1P46940 1657 aa10.09□□□□□ -0.79
PTPRB-203ENST00000538174 PZPP20742 1482 aa10.09□□□□□ -0.79
PTPRB-203ENST00000538174 UBAP1LF5GYI3 381 aa10.08□□□□□ -0.8
PTPRB-203ENST00000538174 CDC42BPAQ5VT25 1732 aa10.08□□□□□ -0.8
PTPRB-203ENST00000538174 ATP7AQ04656 1500 aa10.08□□□□□ -0.8
PTPRB-203ENST00000538174 ZMYM3Q14202 1370 aa10.08□□□□□ -0.8
PTPRB-203ENST00000538174 BCANQ96GW7 911 aa10.08□□□□□ -0.8
PTPRB-203ENST00000538174 ABCC3O15438 1527 aa10.06□□□□□ -0.8
PTPRB-203ENST00000538174 FAM135BQ49AJ0 1406 aa10.06□□□□□ -0.8
PTPRB-203ENST00000538174 A2MP01023 1474 aa10.05□□□□□ -0.8
PTPRB-203ENST00000538174 ESF1Q9H501 851 aaKnown RBP10.05□□□□□ -0.8
PTPRB-203ENST00000538174 GTF3C3Q9Y5Q9 886 aa10.05□□□□□ -0.8
PTPRB-203ENST00000538174 EIF2AK4Q9P2K8 1649 aaKnown RBP10.04□□□□□ -0.8
PTPRB-203ENST00000538174 CLSPNQ9HAW4 1339 aa10.03□□□□□ -0.8
PTPRB-203ENST00000538174 LRRC7Q96NW7 1537 aa10.02□□□□□ -0.81
PTPRB-203ENST00000538174 NWD1Q149M9 1564 aa10.01□□□□□ -0.81
PTPRB-203ENST00000538174 SLIT1O75093 1534 aa10.01□□□□□ -0.81
PTPRB-203ENST00000538174 NCOA3Q9Y6Q9 1424 aa10.01□□□□□ -0.81
PTPRB-203ENST00000538174 NPHP4O75161 1426 aaPredicted RBP10□□□□□ -0.81
PTPRB-203ENST00000538174 ARHGAP23Q9P227 1491 aa10□□□□□ -0.81
PTPRB-203ENST00000538174 ZNF335Q9H4Z2 1342 aaPredicted RBP10□□□□□ -0.81
PTPRB-203ENST00000538174 CASKIN1Q8WXD9 1431 aa10□□□□□ -0.81
PTPRB-203ENST00000538174 HSPA1LP34931 641 aa10□□□□□ -0.81
PTPRB-203ENST00000538174 LRRIQ1Q96JM4 1722 aa9.99□□□□□ -0.81
PTPRB-203ENST00000538174 C14orf37Q86TY3 774 aa9.99□□□□□ -0.81
PTPRB-203ENST00000538174 FYCO1Q9BQS8 1478 aa9.98□□□□□ -0.81
PTPRB-203ENST00000538174 MAST1Q9Y2H9 1570 aa9.98□□□□□ -0.81
PTPRB-203ENST00000538174 PDIA4P13667 645 aaKnown RBP9.98□□□□□ -0.81
PTPRB-203ENST00000538174 FGD6Q6ZV73 1430 aa9.98□□□□□ -0.81
PTPRB-203ENST00000538174 PHF23Q9BUL5 403 aaPredicted RBP9.98□□□□□ -0.81
PTPRB-203ENST00000538174 NCOA2Q15596 1464 aa9.97□□□□□ -0.81
PTPRB-203ENST00000538174 XIRP1Q702N8 1843 aaKnown RBP9.97□□□□□ -0.81
PTPRB-203ENST00000538174 UBE2Q2Q8WVN8 375 aa9.97□□□□□ -0.81
PTPRB-203ENST00000538174 TNRQ92752 1358 aa9.97□□□□□ -0.81
PTPRB-203ENST00000538174 NKTRP30414 1462 aaKnown RBP9.97□□□□□ -0.81
PTPRB-203ENST00000538174 STRCP1A6NGW2 1772 aa9.97□□□□□ -0.81
PTPRB-203ENST00000538174 CEBPAP49715 358 aaPredicted RBP9.97□□□□□ -0.81
PTPRB-203ENST00000538174 SHPRHQ149N8 1683 aa9.97□□□□□ -0.81
PTPRB-203ENST00000538174 ARHGEF5Q12774 1597 aa9.96□□□□□ -0.82
PTPRB-203ENST00000538174 SETD1AO15047 1707 aaKnown RBP9.95□□□□□ -0.82
PTPRB-203ENST00000538174 FOXD1Q16676 465 aa9.95□□□□□ -0.82
PTPRB-203ENST00000538174 UGGT1Q9NYU2 1555 aa9.95□□□□□ -0.82
PTPRB-203ENST00000538174 NCKAP5LQ9HCH0 1330 aa9.94□□□□□ -0.82
PTPRB-203ENST00000538174 THEMISQ8N1K5 641 aaPredicted RBP9.94□□□□□ -0.82
PTPRB-203ENST00000538174 UBR1Q8IWV7 1749 aa9.93□□□□□ -0.82
PTPRB-203ENST00000538174 SYCP2Q9BX26 1530 aa9.93□□□□□ -0.82
PTPRB-203ENST00000538174 MLECQ14165 292 aa9.93□□□□□ -0.82
PTPRB-203ENST00000538174 RSPH4AQ5TD94 716 aa9.93□□□□□ -0.82
PTPRB-203ENST00000538174 ARHGAP31Q2M1Z3 1444 aa9.93□□□□□ -0.82
PTPRB-203ENST00000538174 DHX29Q7Z478 1369 aaKnown RBP9.93□□□□□ -0.82
PTPRB-203ENST00000538174 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP9.93□□□□□ -0.82
PTPRB-203ENST00000538174 ANKLE2Q86XL3 938 aa9.93□□□□□ -0.82
PTPRB-203ENST00000538174 RRBP1Q9P2E9 1410 aaKnown RBP9.93□□□□□ -0.82
PTPRB-203ENST00000538174 AHDC1Q5TGY3 1603 aaPredicted RBP9.93□□□□□ -0.82
PTPRB-203ENST00000538174 MIA2Q96PC5 1412 aa9.92□□□□□ -0.82
PTPRB-203ENST00000538174 GPATCH8Q9UKJ3 1502 aaKnown RBP9.92□□□□□ -0.82
PTPRB-203ENST00000538174 ARHGAP35Q9NRY4 1499 aa9.92□□□□□ -0.82
PTPRB-203ENST00000538174 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.92□□□□□ -0.82
PTPRB-203ENST00000538174 HNRNPUL2Q1KMD3 747 aaKnown RBP9.92□□□□□ -0.82
PTPRB-203ENST00000538174 UBTFP17480 764 aaKnown RBP9.91□□□□□ -0.82
PTPRB-203ENST00000538174 SPAG9O60271 1321 aaKnown RBP9.9□□□□□ -0.82
PTPRB-203ENST00000538174 AFAP1Q8N556 730 aa9.89□□□□□ -0.83
PTPRB-203ENST00000538174 SCAF11Q99590 1463 aaKnown RBP9.89□□□□□ -0.83
PTPRB-203ENST00000538174 TIAM1Q13009 1591 aa9.88□□□□□ -0.83
PTPRB-203ENST00000538174 RGS17Q9UGC6 210 aaPredicted RBP9.88□□□□□ -0.83
PTPRB-203ENST00000538174 MBD5Q9P267 1494 aa9.88□□□□□ -0.83
PTPRB-203ENST00000538174 LRP5O75197 1615 aa9.88□□□□□ -0.83
PTPRB-203ENST00000538174 SPATA31A6Q5VVP1 1343 aa9.87□□□□□ -0.83
PTPRB-203ENST00000538174 DIP2AQ14689 1571 aa9.87□□□□□ -0.83
PTPRB-203ENST00000538174 PTPN23Q9H3S7 1636 aa9.87□□□□□ -0.83
PTPRB-203ENST00000538174 ERVK-7P63135 1459 aa9.87□□□□□ -0.83
PTPRB-203ENST00000538174 EHBP1L1Q8N3D4 1523 aa9.87□□□□□ -0.83
PTPRB-203ENST00000538174 COL16A1Q07092 1604 aaPredicted RBP9.87□□□□□ -0.83
PTPRB-203ENST00000538174 MROH1Q8NDA8 1641 aa9.86□□□□□ -0.83
PTPRB-203ENST00000538174 ROBO1Q9Y6N7 1651 aa9.86□□□□□ -0.83
PTPRB-203ENST00000538174 JCADQ9P266 1359 aa9.86□□□□□ -0.83
PTPRB-203ENST00000538174 LMTK2Q8IWU2 1503 aa9.86□□□□□ -0.83
PTPRB-203ENST00000538174 LAMC1P11047 1609 aa9.86□□□□□ -0.83
PTPRB-203ENST00000538174 PRDM15P57071 1507 aaPredicted RBP9.85□□□□□ -0.83
PTPRB-203ENST00000538174 PPARGC1BQ86YN6 1023 aaKnown RBP9.85□□□□□ -0.83
PTPRB-203ENST00000538174 PHLPP1O60346 1717 aa9.85□□□□□ -0.83
PTPRB-203ENST00000538174 FBXO3Q9UK99 471 aa9.85□□□□□ -0.83
PTPRB-203ENST00000538174 CCDC141Q6ZP82 1450 aa9.85□□□□□ -0.83
PTPRB-203ENST00000538174 TET3O43151 1660 aa9.84□□□□□ -0.83
PTPRB-203ENST00000538174 PLCB2Q00722 1185 aa9.83□□□□□ -0.84
PTPRB-203ENST00000538174 PDE4CQ08493 712 aa9.83□□□□□ -0.84
PTPRB-203ENST00000538174 ZNF772Q68DY9 489 aaPredicted RBP9.82□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms