RNA–Protein interactions for RNA: ENST00000538120.5

CLIP1-210, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 3

Gene CLIP1, Length 2,472 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-210ENST00000538120 MYO5CQ9NQX4 1742 aa15.28■□□□□ 0.04
CLIP1-210ENST00000538120 KIAA1107Q9UPP5 1409 aa15.28■□□□□ 0.04
CLIP1-210ENST00000538120 OSCARQ8IYS5 282 aa15.27■□□□□ 0.03
CLIP1-210ENST00000538120 ARHGEF12Q9NZN5 1544 aa15.26■□□□□ 0.03
CLIP1-210ENST00000538120 L3MBTL2Q969R5 705 aa15.26■□□□□ 0.03
CLIP1-210ENST00000538120 MAST1Q9Y2H9 1570 aa15.25■□□□□ 0.03
CLIP1-210ENST00000538120 HIRIP3Q9BW71 556 aaPredicted RBP15.25■□□□□ 0.03
CLIP1-210ENST00000538120 PLEKHH2Q8IVE3 1493 aa15.25■□□□□ 0.03
CLIP1-210ENST00000538120 KDM5DQ9BY66 1539 aa15.24■□□□□ 0.03
CLIP1-210ENST00000538120 PKD2Q13563 968 aa15.24■□□□□ 0.03
CLIP1-210ENST00000538120 TEX14Q8IWB6 1497 aa15.23■□□□□ 0.03
CLIP1-210ENST00000538120 NUP155O75694 1391 aa15.23■□□□□ 0.03
CLIP1-210ENST00000538120 EFCAB2Q5VUJ9 269 aa15.22■□□□□ 0.03
CLIP1-210ENST00000538120 WDR7Q9Y4E6 1490 aa15.22■□□□□ 0.03
CLIP1-210ENST00000538120 DDX10Q13206 875 aaKnown RBP15.19■□□□□ 0.02
CLIP1-210ENST00000538120 ABCC1P33527 1531 aa15.19■□□□□ 0.02
CLIP1-210ENST00000538120 NBPF8Q3BBV2 869 aa15.19■□□□□ 0.02
CLIP1-210ENST00000538120 ARAP3Q8WWN8 1544 aa15.19■□□□□ 0.02
CLIP1-210ENST00000538120 PLXNC1O60486 1568 aa15.18■□□□□ 0.02
CLIP1-210ENST00000538120 TRAPPC8Q9Y2L5 1435 aa15.18■□□□□ 0.02
CLIP1-210ENST00000538120 ASXL2Q76L83 1435 aa15.16■□□□□ 0.02
CLIP1-210ENST00000538120 HSPA5P11021 654 aaKnown RBP15.15■□□□□ 0.02
CLIP1-210ENST00000538120 MKRN4PQ13434 485 aaPredicted RBP15.15■□□□□ 0.02
CLIP1-210ENST00000538120 ABCA9Q8IUA7 1624 aa15.14■□□□□ 0.01
CLIP1-210ENST00000538120 FAM135AQ9P2D6 1515 aa15.14■□□□□ 0.01
CLIP1-210ENST00000538120 SUPT16HQ9Y5B9 1047 aaKnown RBP15.14■□□□□ 0.01
CLIP1-210ENST00000538120 UNC13BO14795 1591 aa15.13■□□□□ 0.01
CLIP1-210ENST00000538120 DUOX2Q9NRD8 1548 aa15.13■□□□□ 0.01
CLIP1-210ENST00000538120 AFAP1Q8N556 730 aa15.11■□□□□ 0.01
CLIP1-210ENST00000538120 ERBINQ96RT1 1412 aa15.1■□□□□ 0.01
CLIP1-210ENST00000538120 EIF4G2P78344 907 aaKnown RBP eCLIP15.1■□□□□ 0.01
CLIP1-210ENST00000538120 FANCAO15360 1455 aa15.1■□□□□ 0.01
CLIP1-210ENST00000538120 RTEL1-TNFRSF6BF6WH68 1400 aa15.1■□□□□ 0.01
CLIP1-210ENST00000538120 MAGI2Q86UL8 1455 aa15.09■□□□□ 0.01
CLIP1-210ENST00000538120 SPAG9O60271 1321 aaKnown RBP15.08■□□□□ 0.01
CLIP1-210ENST00000538120 ZFYVE16Q7Z3T8 1539 aa15.07■□□□□ 0
CLIP1-210ENST00000538120 WASHC2AQ641Q2 1341 aa15.07■□□□□ 0
CLIP1-210ENST00000538120 PLA2R1Q13018 1463 aa15.07■□□□□ 0
CLIP1-210ENST00000538120 IQGAP3Q86VI3 1631 aa15.07■□□□□ 0
CLIP1-210ENST00000538120 SPATA31E1Q6ZUB1 1445 aa15.07■□□□□ 0
CLIP1-210ENST00000538120 NPM1P06748 294 aaKnown RBP eCLIP15.06■□□□□ 0
CLIP1-210ENST00000538120 UHRF1BP1Q6BDS2 1440 aa15.05■□□□□ 0
CLIP1-210ENST00000538120 C11orf95C9JLR9 678 aaPredicted RBP15.05■□□□□ -0
CLIP1-210ENST00000538120 TULP1O00294 542 aaPredicted RBP15.05■□□□□ -0
CLIP1-210ENST00000538120 SCAPERQ9BY12 1400 aa15.04■□□□□ -0
CLIP1-210ENST00000538120 ADGRL1O94910 1474 aa15.04■□□□□ -0
CLIP1-210ENST00000538120 INO80Q9ULG1 1556 aaPredicted RBP15.03■□□□□ -0
CLIP1-210ENST00000538120 ZBTB12Q9Y330 459 aaPredicted RBP15.02■□□□□ -0
CLIP1-210ENST00000538120 ATP7AQ04656 1500 aa15.01□□□□□ -0.01
CLIP1-210ENST00000538120 ATP10AO60312 1499 aa15□□□□□ -0.01
CLIP1-210ENST00000538120 ZNF326Q5BKZ1 582 aaKnown RBP15□□□□□ -0.01
CLIP1-210ENST00000538120 CCDC7Q96M83 1385 aa14.99□□□□□ -0.01
CLIP1-210ENST00000538120 CCDC144AA2RUR9 1427 aa14.99□□□□□ -0.01
CLIP1-210ENST00000538120 CD109Q6YHK3 1445 aa14.99□□□□□ -0.01
CLIP1-210ENST00000538120 ANP32CO43423 234 aa14.99□□□□□ -0.01
CLIP1-210ENST00000538120 RALGAPBQ86X10 1494 aa14.98□□□□□ -0.01
CLIP1-210ENST00000538120 DCAF11Q8TEB1 546 aa14.98□□□□□ -0.01
CLIP1-210ENST00000538120 CCER2I3L3R5 266 aa14.97□□□□□ -0.01
CLIP1-210ENST00000538120 KDM2AQ9Y2K7 1162 aa14.97□□□□□ -0.01
CLIP1-210ENST00000538120 TSHZ2Q9NRE2 1034 aa14.97□□□□□ -0.01
CLIP1-210ENST00000538120 TAOK2Q9UL54 1235 aa14.97□□□□□ -0.01
CLIP1-210ENST00000538120 DEPDC5O75140 1603 aa14.96□□□□□ -0.01
CLIP1-210ENST00000538120 DHX29Q7Z478 1369 aaKnown RBP14.96□□□□□ -0.01
CLIP1-210ENST00000538120 USP47Q96K76 1375 aa14.96□□□□□ -0.02
CLIP1-210ENST00000538120 KIF7Q2M1P5 1343 aa14.95□□□□□ -0.02
CLIP1-210ENST00000538120 KDM5CP41229 1560 aa14.95□□□□□ -0.02
CLIP1-210ENST00000538120 VWDEQ8N2E2 1590 aa14.94□□□□□ -0.02
CLIP1-210ENST00000538120 CNTLNQ9NXG0 1405 aa14.94□□□□□ -0.02
CLIP1-210ENST00000538120 A2MP01023 1474 aa14.94□□□□□ -0.02
CLIP1-210ENST00000538120 ZNF518AQ6AHZ1 1483 aa14.94□□□□□ -0.02
CLIP1-210ENST00000538120 KIDINS220Q9ULH0 1771 aa14.93□□□□□ -0.02
CLIP1-210ENST00000538120 PRAG1Q86YV5 1406 aa14.92□□□□□ -0.02
CLIP1-210ENST00000538120 E9PCH4 1651 aa14.92□□□□□ -0.02
CLIP1-210ENST00000538120 RGL3Q3MIN7 710 aa14.92□□□□□ -0.02
CLIP1-210ENST00000538120 POGZQ7Z3K3 1410 aa14.92□□□□□ -0.02
CLIP1-210ENST00000538120 KIF3BO15066 747 aa14.92□□□□□ -0.02
CLIP1-210ENST00000538120 BCORL1Q5H9F3 1711 aa14.91□□□□□ -0.02
CLIP1-210ENST00000538120 MYT1LQ9UL68 1186 aa14.91□□□□□ -0.02
CLIP1-210ENST00000538120 CFAP74Q9C0B2 1584 aa14.91□□□□□ -0.02
CLIP1-210ENST00000538120 PTPRTO14522 1441 aa14.91□□□□□ -0.02
CLIP1-210ENST00000538120 MROH1Q8NDA8 1641 aa14.91□□□□□ -0.02
CLIP1-210ENST00000538120 EIF2AK4Q9P2K8 1649 aaKnown RBP14.91□□□□□ -0.02
CLIP1-210ENST00000538120 CYB5RLQ6IPT4 315 aa14.91□□□□□ -0.02
CLIP1-210ENST00000538120 BCANQ96GW7 911 aa14.91□□□□□ -0.02
CLIP1-210ENST00000538120 CARD11Q9BXL7 1154 aa14.91□□□□□ -0.02
CLIP1-210ENST00000538120 POLR1AO95602 1720 aaPredicted RBP14.9□□□□□ -0.02
CLIP1-210ENST00000538120 PRDM15P57071 1507 aaPredicted RBP14.89□□□□□ -0.03
CLIP1-210ENST00000538120 KLHL34Q8N239 644 aa14.89□□□□□ -0.03
CLIP1-210ENST00000538120 MLH3Q9UHC1 1453 aa14.89□□□□□ -0.03
CLIP1-210ENST00000538120 TET3O43151 1660 aa14.89□□□□□ -0.03
CLIP1-210ENST00000538120 RIMBP3CA6NJZ7 1639 aa14.88□□□□□ -0.03
CLIP1-210ENST00000538120 RIMBP3BA6NNM3 1639 aa14.88□□□□□ -0.03
CLIP1-210ENST00000538120 RIMBP3Q9UFD9 1639 aa14.88□□□□□ -0.03
CLIP1-210ENST00000538120 TRPM2O94759 1503 aa14.88□□□□□ -0.03
CLIP1-210ENST00000538120 NEO1Q92859 1461 aa14.88□□□□□ -0.03
CLIP1-210ENST00000538120 KANK1Q14678 1352 aa14.88□□□□□ -0.03
CLIP1-210ENST00000538120 TRPM1Q7Z4N2 1603 aa14.87□□□□□ -0.03
CLIP1-210ENST00000538120 FKBP8Q14318 412 aa14.87□□□□□ -0.03
CLIP1-210ENST00000538120 HOMEZQ8IX15 550 aa14.87□□□□□ -0.03
CLIP1-210ENST00000538120 ROCK2O75116 1388 aaKnown RBP14.87□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms