RNA–Protein interactions for RNA: ENST00000536337.5

PTPN21-202, Transcript of protein tyrosine phosphatase, non-receptor type 21, humanhuman

TSL 1 (best)

Gene PTPN21, Length 3,943 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN21-202ENST00000536337 NCOA1Q15788 1441 aa16.77■□□□□ 0.27
PTPN21-202ENST00000536337 BCL2L13Q9BXK5 485 aa16.77■□□□□ 0.27
PTPN21-202ENST00000536337 HSP90AA1P07900 732 aaKnown RBP16.76■□□□□ 0.27
PTPN21-202ENST00000536337 PLB1Q6P1J6 1458 aa16.76■□□□□ 0.27
PTPN21-202ENST00000536337 TRAK1Q9UPV9 953 aa16.76■□□□□ 0.27
PTPN21-202ENST00000536337 SPAG9O60271 1321 aaKnown RBP16.75■□□□□ 0.27
PTPN21-202ENST00000536337 RSPH4AQ5TD94 716 aa16.75■□□□□ 0.27
PTPN21-202ENST00000536337 FTSJ3Q8IY81 847 aaKnown RBP16.74■□□□□ 0.27
PTPN21-202ENST00000536337 AFAP1Q8N556 730 aa16.74■□□□□ 0.27
PTPN21-202ENST00000536337 CFAP53Q96M91 514 aa16.74■□□□□ 0.27
PTPN21-202ENST00000536337 SNAPC4Q5SXM2 1469 aa16.74■□□□□ 0.27
PTPN21-202ENST00000536337 TROQ12816 1431 aaPredicted RBP16.74■□□□□ 0.27
PTPN21-202ENST00000536337 ZNF608Q9ULD9 1512 aaPredicted RBP16.73■□□□□ 0.27
PTPN21-202ENST00000536337 THOC2Q8NI27 1593 aaKnown RBP16.72■□□□□ 0.27
PTPN21-202ENST00000536337 SLKQ9H2G2 1235 aaPredicted RBP16.72■□□□□ 0.27
PTPN21-202ENST00000536337 CUL7Q14999 1698 aa16.72■□□□□ 0.27
PTPN21-202ENST00000536337 HECW1Q76N89 1606 aa16.71■□□□□ 0.27
PTPN21-202ENST00000536337 RPRD2Q5VT52 1461 aaKnown RBP16.71■□□□□ 0.27
PTPN21-202ENST00000536337 U2AF1L5P0DN76 240 aaPredicted RBP16.71■□□□□ 0.27
PTPN21-202ENST00000536337 U2AF1Q01081 240 aaKnown RBP eCLIP16.71■□□□□ 0.27
PTPN21-202ENST00000536337 C9orf84Q5VXU9 1444 aa16.7■□□□□ 0.26
PTPN21-202ENST00000536337 IQGAP2Q13576 1575 aa16.7■□□□□ 0.26
PTPN21-202ENST00000536337 ARID4BQ4LE39 1312 aaPredicted RBP16.69■□□□□ 0.26
PTPN21-202ENST00000536337 BRD4O60885 1362 aaPredicted RBP16.69■□□□□ 0.26
PTPN21-202ENST00000536337 ROCK1Q13464 1354 aa16.69■□□□□ 0.26
PTPN21-202ENST00000536337 SRPK2P78362 688 aaKnown RBP16.68■□□□□ 0.26
PTPN21-202ENST00000536337 COG6Q9Y2V7 657 aa16.68■□□□□ 0.26
PTPN21-202ENST00000536337 SMG6Q86US8 1419 aaKnown RBP16.68■□□□□ 0.26
PTPN21-202ENST00000536337 BECN1Q14457 450 aa16.67■□□□□ 0.26
PTPN21-202ENST00000536337 POGKQ9P215 609 aa16.67■□□□□ 0.26
PTPN21-202ENST00000536337 KANK1Q14678 1352 aa16.66■□□□□ 0.26
PTPN21-202ENST00000536337 UGGT2Q9NYU1 1516 aa16.66■□□□□ 0.26
PTPN21-202ENST00000536337 C20orf194Q5TEA3 1177 aa16.65■□□□□ 0.26
PTPN21-202ENST00000536337 KIAA0586Q9BVV6 1533 aa16.65■□□□□ 0.26
PTPN21-202ENST00000536337 CFAP70Q5T0N1 1121 aa16.65■□□□□ 0.26
PTPN21-202ENST00000536337 ARHGEF11O15085 1522 aa16.65■□□□□ 0.26
PTPN21-202ENST00000536337 MAPK8IP3Q9UPT6 1336 aa16.64■□□□□ 0.25
PTPN21-202ENST00000536337 MRC2Q9UBG0 1479 aa16.64■□□□□ 0.25
PTPN21-202ENST00000536337 CFAP43Q8NDM7 1665 aa16.64■□□□□ 0.25
PTPN21-202ENST00000536337 CAMSAP2Q08AD1 1489 aa16.63■□□□□ 0.25
PTPN21-202ENST00000536337 PLEKHG5O94827 1062 aa16.63■□□□□ 0.25
PTPN21-202ENST00000536337 PPP2R1AP30153 589 aa16.63■□□□□ 0.25
PTPN21-202ENST00000536337 ESF1Q9H501 851 aaKnown RBP16.62■□□□□ 0.25
PTPN21-202ENST00000536337 TMEM132EQ6IEE7 984 aa16.61■□□□□ 0.25
PTPN21-202ENST00000536337 LAMC3Q9Y6N6 1575 aa16.61■□□□□ 0.25
PTPN21-202ENST00000536337 CENPJQ9HC77 1338 aaPredicted RBP16.61■□□□□ 0.25
PTPN21-202ENST00000536337 BCAR3O75815 825 aa16.6■□□□□ 0.25
PTPN21-202ENST00000536337 CENPQQ7L2Z9 268 aaPredicted RBP16.6■□□□□ 0.25
PTPN21-202ENST00000536337 PANK1Q8TE04 598 aa16.6■□□□□ 0.25
PTPN21-202ENST00000536337 MLECQ14165 292 aa16.59■□□□□ 0.25
PTPN21-202ENST00000536337 MAGI3Q5TCQ9 1506 aa16.59■□□□□ 0.25
PTPN21-202ENST00000536337 SOX12O15370 315 aa16.58■□□□□ 0.25
PTPN21-202ENST00000536337 FAM161AQ3B820 660 aa16.58■□□□□ 0.24
PTPN21-202ENST00000536337 BACH2Q9BYV9 841 aa16.58■□□□□ 0.24
PTPN21-202ENST00000536337 IFT140Q96RY7 1462 aa16.58■□□□□ 0.24
PTPN21-202ENST00000536337 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.57■□□□□ 0.24
PTPN21-202ENST00000536337 GZF1Q9H116 711 aaPredicted RBP16.57■□□□□ 0.24
PTPN21-202ENST00000536337 MS4A1P11836 297 aa16.56■□□□□ 0.24
PTPN21-202ENST00000536337 GPATCH8Q9UKJ3 1502 aaKnown RBP16.56■□□□□ 0.24
PTPN21-202ENST00000536337 ITPRIPQ8IWB1 547 aa16.55■□□□□ 0.24
PTPN21-202ENST00000536337 NUP153P49790 1475 aaKnown RBP16.55■□□□□ 0.24
PTPN21-202ENST00000536337 WASHC2CQ9Y4E1 1318 aa16.55■□□□□ 0.24
PTPN21-202ENST00000536337 CTTNBP2Q8WZ74 1663 aa16.54■□□□□ 0.24
PTPN21-202ENST00000536337 E9PSI1 815 aa16.53■□□□□ 0.24
PTPN21-202ENST00000536337 SMC4Q9NTJ3 1288 aa16.53■□□□□ 0.24
PTPN21-202ENST00000536337 ARHGAP5Q13017 1502 aa16.53■□□□□ 0.24
PTPN21-202ENST00000536337 SLC12A5Q9H2X9 1139 aa16.53■□□□□ 0.24
PTPN21-202ENST00000536337 ELL2O00472 640 aaPredicted RBP16.53■□□□□ 0.24
PTPN21-202ENST00000536337 GRIN2AQ12879 1464 aa16.53■□□□□ 0.24
PTPN21-202ENST00000536337 DHX29Q7Z478 1369 aaKnown RBP16.52■□□□□ 0.24
PTPN21-202ENST00000536337 MFAP1P55081 439 aaKnown RBP16.52■□□□□ 0.24
PTPN21-202ENST00000536337 KDM6BO15054 1643 aa16.52■□□□□ 0.24
PTPN21-202ENST00000536337 EIF3AQ14152 1382 aaKnown RBP16.52■□□□□ 0.23
PTPN21-202ENST00000536337 APBB1O00213 710 aa16.51■□□□□ 0.23
PTPN21-202ENST00000536337 SYNJ2O15056 1496 aa16.51■□□□□ 0.23
PTPN21-202ENST00000536337 MAGI1Q96QZ7 1491 aaPredicted RBP16.5■□□□□ 0.23
PTPN21-202ENST00000536337 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.5■□□□□ 0.23
PTPN21-202ENST00000536337 DISP3Q9P2K9 1392 aa16.5■□□□□ 0.23
PTPN21-202ENST00000536337 IL27Q8NEV9 243 aa16.5■□□□□ 0.23
PTPN21-202ENST00000536337 MYH16Q9H6N6 1097 aa16.5■□□□□ 0.23
PTPN21-202ENST00000536337 TCOF1Q13428 1488 aaKnown RBP16.49■□□□□ 0.23
PTPN21-202ENST00000536337 RWDD1Q9H446 243 aaPredicted RBP16.49■□□□□ 0.23
PTPN21-202ENST00000536337 ERBINQ96RT1 1412 aa16.49■□□□□ 0.23
PTPN21-202ENST00000536337 NFKBIBQ15653 356 aa16.49■□□□□ 0.23
PTPN21-202ENST00000536337 MTHFSP49914 203 aa16.48■□□□□ 0.23
PTPN21-202ENST00000536337 TCP11L2Q8N4U5 519 aa16.47■□□□□ 0.23
PTPN21-202ENST00000536337 GSE1Q14687 1217 aa16.47■□□□□ 0.23
PTPN21-202ENST00000536337 TPRNQ4KMQ1 711 aa16.46■□□□□ 0.23
PTPN21-202ENST00000536337 MINK1Q8N4C8 1332 aaPredicted RBP16.46■□□□□ 0.23
PTPN21-202ENST00000536337 CABP2Q9NPB3 220 aa16.46■□□□□ 0.22
PTPN21-202ENST00000536337 GGNBP2Q9H3C7 697 aa16.45■□□□□ 0.22
PTPN21-202ENST00000536337 NCLP19338 710 aaKnown RBP16.45■□□□□ 0.22
PTPN21-202ENST00000536337 FOXD4L1Q9NU39 408 aa16.45■□□□□ 0.22
PTPN21-202ENST00000536337 PZPP20742 1482 aa16.45■□□□□ 0.22
PTPN21-202ENST00000536337 NUTM2FA1L443 756 aa16.45■□□□□ 0.22
PTPN21-202ENST00000536337 PMFBP1Q8TBY8 1022 aa16.44■□□□□ 0.22
PTPN21-202ENST00000536337 FRAT2O75474 233 aaPredicted RBP16.44■□□□□ 0.22
PTPN21-202ENST00000536337 USP35Q9P2H5 1018 aa16.44■□□□□ 0.22
PTPN21-202ENST00000536337 CGNL1Q0VF96 1302 aa16.43■□□□□ 0.22
PTPN21-202ENST00000536337 TEX14Q8IWB6 1497 aa16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms