RNA–Protein interactions for RNA: ENST00000535094.6

MCF2L-232, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene MCF2L, Length 3,752 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-232ENST00000535094 PRKCSHP14314 528 aaPredicted RBP20.67■□□□□ 0.9
MCF2L-232ENST00000535094 CUL7Q14999 1698 aa20.66■□□□□ 0.9
MCF2L-232ENST00000535094 CHGAP10645 457 aaKnown RBP20.65■□□□□ 0.9
MCF2L-232ENST00000535094 SPATA31E1Q6ZUB1 1445 aa20.65■□□□□ 0.9
MCF2L-232ENST00000535094 RNF123Q5XPI4 1314 aa20.64■□□□□ 0.9
MCF2L-232ENST00000535094 FRAT2O75474 233 aaPredicted RBP20.64■□□□□ 0.9
MCF2L-232ENST00000535094 GOLGA2Q08379 1002 aa20.64■□□□□ 0.89
MCF2L-232ENST00000535094 ARID4BQ4LE39 1312 aaPredicted RBP20.64■□□□□ 0.89
MCF2L-232ENST00000535094 TEX14Q8IWB6 1497 aa20.63■□□□□ 0.89
MCF2L-232ENST00000535094 CTTNBP2Q8WZ74 1663 aa20.63■□□□□ 0.89
MCF2L-232ENST00000535094 ROCK1Q13464 1354 aa20.62■□□□□ 0.89
MCF2L-232ENST00000535094 FAM161AQ3B820 660 aa20.62■□□□□ 0.89
MCF2L-232ENST00000535094 HECW1Q76N89 1606 aa20.61■□□□□ 0.89
MCF2L-232ENST00000535094 APAF1O14727 1248 aa20.6■□□□□ 0.89
MCF2L-232ENST00000535094 JPH4Q96JJ6 628 aa20.59■□□□□ 0.89
MCF2L-232ENST00000535094 CENPQQ7L2Z9 268 aaPredicted RBP20.59■□□□□ 0.89
MCF2L-232ENST00000535094 UPF2Q9HAU5 1272 aaKnown RBP20.59■□□□□ 0.89
MCF2L-232ENST00000535094 TCOF1Q13428 1488 aaKnown RBP20.57■□□□□ 0.88
MCF2L-232ENST00000535094 CCDC144AA2RUR9 1427 aa20.57■□□□□ 0.88
MCF2L-232ENST00000535094 CLUAP1Q96AJ1 413 aa20.57■□□□□ 0.88
MCF2L-232ENST00000535094 GZF1Q9H116 711 aaPredicted RBP20.57■□□□□ 0.88
MCF2L-232ENST00000535094 BCL2L13Q9BXK5 485 aa20.57■□□□□ 0.88
MCF2L-232ENST00000535094 RRP7AQ9Y3A4 280 aaKnown RBP20.56■□□□□ 0.88
MCF2L-232ENST00000535094 BCAR3O75815 825 aa20.55■□□□□ 0.88
MCF2L-232ENST00000535094 COG6Q9Y2V7 657 aa20.55■□□□□ 0.88
MCF2L-232ENST00000535094 BECN1Q14457 450 aa20.53■□□□□ 0.88
MCF2L-232ENST00000535094 IQGAP2Q13576 1575 aa20.51■□□□□ 0.87
MCF2L-232ENST00000535094 PZPP20742 1482 aa20.51■□□□□ 0.87
MCF2L-232ENST00000535094 CAMSAP2Q08AD1 1489 aa20.5■□□□□ 0.87
MCF2L-232ENST00000535094 PANK1Q8TE04 598 aa20.49■□□□□ 0.87
MCF2L-232ENST00000535094 PLB1Q6P1J6 1458 aa20.49■□□□□ 0.87
MCF2L-232ENST00000535094 TROQ12816 1431 aaPredicted RBP20.48■□□□□ 0.87
MCF2L-232ENST00000535094 PPP2R1AP30153 589 aa20.48■□□□□ 0.87
MCF2L-232ENST00000535094 LRPPRCP42704 1394 aaKnown RBP20.47■□□□□ 0.87
MCF2L-232ENST00000535094 C9orf84Q5VXU9 1444 aa20.46■□□□□ 0.87
MCF2L-232ENST00000535094 SAMD9Q5K651 1589 aa20.46■□□□□ 0.87
MCF2L-232ENST00000535094 DISP3Q9P2K9 1392 aa20.45■□□□□ 0.86
MCF2L-232ENST00000535094 LAMC3Q9Y6N6 1575 aa20.44■□□□□ 0.86
MCF2L-232ENST00000535094 PER1O15534 1290 aaPredicted RBP20.44■□□□□ 0.86
MCF2L-232ENST00000535094 CDCA8Q53HL2 280 aa20.44■□□□□ 0.86
MCF2L-232ENST00000535094 GCC2Q8IWJ2 1684 aa20.44■□□□□ 0.86
MCF2L-232ENST00000535094 LRRIQ1Q96JM4 1722 aa20.42■□□□□ 0.86
MCF2L-232ENST00000535094 DUSP27Q5VZP5 1158 aa20.42■□□□□ 0.86
MCF2L-232ENST00000535094 CARMIL2Q6F5E8 1435 aa20.42■□□□□ 0.86
MCF2L-232ENST00000535094 NUP153P49790 1475 aaKnown RBP20.41■□□□□ 0.86
MCF2L-232ENST00000535094 BCORL1Q5H9F3 1711 aa20.41■□□□□ 0.86
MCF2L-232ENST00000535094 HSP90AA1P07900 732 aaKnown RBP20.4■□□□□ 0.86
MCF2L-232ENST00000535094 CENPJQ9HC77 1338 aaPredicted RBP20.4■□□□□ 0.86
MCF2L-232ENST00000535094 POGKQ9P215 609 aa20.4■□□□□ 0.86
MCF2L-232ENST00000535094 GPATCH8Q9UKJ3 1502 aaKnown RBP20.39■□□□□ 0.85
MCF2L-232ENST00000535094 FTSJ3Q8IY81 847 aaKnown RBP20.38■□□□□ 0.85
MCF2L-232ENST00000535094 NAP1L5Q96NT1 182 aaPredicted RBP20.38■□□□□ 0.85
MCF2L-232ENST00000535094 ZNF608Q9ULD9 1512 aaPredicted RBP20.38■□□□□ 0.85
MCF2L-232ENST00000535094 ERCC6Q03468 1493 aa20.38■□□□□ 0.85
MCF2L-232ENST00000535094 ARHGEF11O15085 1522 aa20.37■□□□□ 0.85
MCF2L-232ENST00000535094 C8orf34Q49A92 452 aa20.37■□□□□ 0.85
MCF2L-232ENST00000535094 PARD3Q8TEW0 1356 aa20.37■□□□□ 0.85
MCF2L-232ENST00000535094 RALGAPBQ86X10 1494 aa20.36■□□□□ 0.85
MCF2L-232ENST00000535094 WDR62O43379 1518 aa20.36■□□□□ 0.85
MCF2L-232ENST00000535094 MFAP1P55081 439 aaKnown RBP20.36■□□□□ 0.85
MCF2L-232ENST00000535094 MORC1Q86VD1 984 aa20.36■□□□□ 0.85
MCF2L-232ENST00000535094 SPINK5Q9NQ38 1064 aaPredicted RBP20.35■□□□□ 0.85
MCF2L-232ENST00000535094 IGHDP01880 384 aa20.35■□□□□ 0.85
MCF2L-232ENST00000535094 SAFB2Q14151 953 aaKnown RBP eCLIP20.35■□□□□ 0.85
MCF2L-232ENST00000535094 PLEKHH1Q9ULM0 1364 aa20.34■□□□□ 0.85
MCF2L-232ENST00000535094 ERBINQ96RT1 1412 aa20.34■□□□□ 0.85
MCF2L-232ENST00000535094 TESK2Q96S53 571 aa20.34■□□□□ 0.85
MCF2L-232ENST00000535094 SLFN5Q08AF3 891 aa20.33■□□□□ 0.84
MCF2L-232ENST00000535094 E9PSI1 815 aa20.32■□□□□ 0.84
MCF2L-232ENST00000535094 SEC24BO95487 1268 aa20.32■□□□□ 0.84
MCF2L-232ENST00000535094 DNMT1P26358 1616 aaKnown RBP20.32■□□□□ 0.84
MCF2L-232ENST00000535094 U2SURPO15042 1029 aaKnown RBP20.31■□□□□ 0.84
MCF2L-232ENST00000535094 WASHC2CQ9Y4E1 1318 aa20.31■□□□□ 0.84
MCF2L-232ENST00000535094 KIAA0586Q9BVV6 1533 aa20.3■□□□□ 0.84
MCF2L-232ENST00000535094 FOXD4L1Q9NU39 408 aa20.29■□□□□ 0.84
MCF2L-232ENST00000535094 U2AF1L5P0DN76 240 aaPredicted RBP20.28■□□□□ 0.84
MCF2L-232ENST00000535094 U2AF1Q01081 240 aaKnown RBP eCLIP20.28■□□□□ 0.84
MCF2L-232ENST00000535094 NUTM2DQ5VT03 806 aaPredicted RBP20.28■□□□□ 0.84
MCF2L-232ENST00000535094 TRAK1Q9UPV9 953 aa20.28■□□□□ 0.84
MCF2L-232ENST00000535094 ABCA5Q8WWZ7 1642 aa20.27■□□□□ 0.84
MCF2L-232ENST00000535094 CGNL1Q0VF96 1302 aa20.27■□□□□ 0.83
MCF2L-232ENST00000535094 DMRT2Q9Y5R5 561 aa20.26■□□□□ 0.83
MCF2L-232ENST00000535094 CFAP70Q5T0N1 1121 aa20.26■□□□□ 0.83
MCF2L-232ENST00000535094 KDM5CP41229 1560 aa20.26■□□□□ 0.83
MCF2L-232ENST00000535094 KDM2BQ8NHM5 1336 aa20.25■□□□□ 0.83
MCF2L-232ENST00000535094 TNNQ9UQP3 1299 aa20.24■□□□□ 0.83
MCF2L-232ENST00000535094 ITPRIPQ8IWB1 547 aa20.24■□□□□ 0.83
MCF2L-232ENST00000535094 MAPK8IP3Q9UPT6 1336 aa20.23■□□□□ 0.83
MCF2L-232ENST00000535094 L1TD1Q5T7N2 865 aaKnown RBP20.23■□□□□ 0.83
MCF2L-232ENST00000535094 GOLGA6L3A6NEY3 463 aa20.23■□□□□ 0.83
MCF2L-232ENST00000535094 KIF3BO15066 747 aa20.23■□□□□ 0.83
MCF2L-232ENST00000535094 RWDD1Q9H446 243 aaPredicted RBP20.23■□□□□ 0.83
MCF2L-232ENST00000535094 CFAP53Q96M91 514 aa20.22■□□□□ 0.83
MCF2L-232ENST00000535094 PDZRN3Q9UPQ7 1066 aa20.22■□□□□ 0.83
MCF2L-232ENST00000535094 PRAG1Q86YV5 1406 aa20.22■□□□□ 0.83
MCF2L-232ENST00000535094 RSPH4AQ5TD94 716 aa20.22■□□□□ 0.83
MCF2L-232ENST00000535094 PTPRGP23470 1445 aa20.22■□□□□ 0.83
MCF2L-232ENST00000535094 KIF14Q15058 1648 aa20.22■□□□□ 0.83
MCF2L-232ENST00000535094 UHRF1BP1Q6BDS2 1440 aa20.22■□□□□ 0.83
MCF2L-232ENST00000535094 AMER1Q5JTC6 1135 aaPredicted RBP20.21■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms