RNA–Protein interactions for RNA: ENST00000534106.2

CHMP4A-208, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 5

Gene CHMP4A, Length 370 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-208ENST00000534106 ZBED2Q9BTP6 218 aa6.19□□□□□ -1.42
CHMP4A-208ENST00000534106 NESP48681 1621 aa6.18□□□□□ -1.42
CHMP4A-208ENST00000534106 ZCCHC6Q5VYS8 1495 aaKnown RBP6.18□□□□□ -1.42
CHMP4A-208ENST00000534106 MFSD10Q14728 455 aa6.18□□□□□ -1.42
CHMP4A-208ENST00000534106 BHMG1C9JSJ3 638 aaPredicted RBP6.17□□□□□ -1.42
CHMP4A-208ENST00000534106 THSD4Q6ZMP0 1018 aa6.17□□□□□ -1.42
CHMP4A-208ENST00000534106 EMILIN3Q9NT22 766 aa6.17□□□□□ -1.42
CHMP4A-208ENST00000534106 PPP1R3GB7ZBB8 358 aa6.15□□□□□ -1.42
CHMP4A-208ENST00000534106 TYW1BQ6NUM6 668 aa6.15□□□□□ -1.42
CHMP4A-208ENST00000534106 PCDHGA10Q9Y5H3 936 aa6.15□□□□□ -1.42
CHMP4A-208ENST00000534106 PHF14O94880 888 aa6.14□□□□□ -1.43
CHMP4A-208ENST00000534106 CADPS2Q86UW7 1296 aa6.14□□□□□ -1.43
CHMP4A-208ENST00000534106 ANKK1Q8NFD2 765 aa6.14□□□□□ -1.43
CHMP4A-208ENST00000534106 FBXW7Q969H0 707 aa6.14□□□□□ -1.43
CHMP4A-208ENST00000534106 DCAF1Q9Y4B6 1507 aa6.14□□□□□ -1.43
CHMP4A-208ENST00000534106 PROX2Q3B8N5 592 aa6.13□□□□□ -1.43
CHMP4A-208ENST00000534106 RABGEF1Q9UJ41 708 aa6.13□□□□□ -1.43
CHMP4A-208ENST00000534106 NCAPD3P42695 1498 aa6.11□□□□□ -1.43
CHMP4A-208ENST00000534106 DPYSL4O14531 572 aa6.11□□□□□ -1.43
CHMP4A-208ENST00000534106 COL9A1P20849 921 aa6.11□□□□□ -1.43
CHMP4A-208ENST00000534106 RBM33Q96EV2 1170 aaKnown RBP6.11□□□□□ -1.43
CHMP4A-208ENST00000534106 EPAS1Q99814 870 aa6.11□□□□□ -1.43
CHMP4A-208ENST00000534106 C6orf132Q5T0Z8 1188 aa6.1□□□□□ -1.43
CHMP4A-208ENST00000534106 KIAA1468Q9P260 1216 aa6.1□□□□□ -1.43
CHMP4A-208ENST00000534106 BCAMP50895 628 aa6.09□□□□□ -1.43
CHMP4A-208ENST00000534106 BBXQ8WY36 941 aaPredicted RBP6.09□□□□□ -1.43
CHMP4A-208ENST00000534106 DDX12PQ92771 950 aa6.09□□□□□ -1.43
CHMP4A-208ENST00000534106 IFFO2Q5TF58 517 aa6.08□□□□□ -1.44
CHMP4A-208ENST00000534106 LAPTM4BQ86VI4 370 aa6.08□□□□□ -1.44
CHMP4A-208ENST00000534106 ZFRQ96KR1 1074 aaKnown RBP6.08□□□□□ -1.44
CHMP4A-208ENST00000534106 SEPT9Q9UHD8 586 aaPredicted RBP6.08□□□□□ -1.44
CHMP4A-208ENST00000534106 ATAD2BQ9ULI0 1458 aa6.08□□□□□ -1.44
CHMP4A-208ENST00000534106 A0A0G2JS52 829 aa6.07□□□□□ -1.44
CHMP4A-208ENST00000534106 RGS20O76081 388 aa6.07□□□□□ -1.44
CHMP4A-208ENST00000534106 CAMK2BQ13554 666 aa6.07□□□□□ -1.44
CHMP4A-208ENST00000534106 IRX2Q9BZI1 471 aaPredicted RBP6.07□□□□□ -1.44
CHMP4A-208ENST00000534106 ZBTB4Q9P1Z0 1013 aaPredicted RBP6.07□□□□□ -1.44
CHMP4A-208ENST00000534106 SOWAHBA6NEL2 793 aa6.06□□□□□ -1.44
CHMP4A-208ENST00000534106 ONECUT3O60422 494 aaPredicted RBP6.06□□□□□ -1.44
CHMP4A-208ENST00000534106 NBR1Q14596 966 aa6.06□□□□□ -1.44
CHMP4A-208ENST00000534106 TRIM6-TRIM34B2RNG4 842 aa6.05□□□□□ -1.44
CHMP4A-208ENST00000534106 MAP3K7O43318 606 aa6.05□□□□□ -1.44
CHMP4A-208ENST00000534106 SPRYD3Q8NCJ5 442 aa6.05□□□□□ -1.44
CHMP4A-208ENST00000534106 WDR70Q9NW82 654 aa6.05□□□□□ -1.44
CHMP4A-208ENST00000534106 NYAP1Q6ZVC0 841 aa6.04□□□□□ -1.44
CHMP4A-208ENST00000534106 PACS2Q86VP3 889 aa6.04□□□□□ -1.44
CHMP4A-208ENST00000534106 LRCH3Q96II8 777 aa6.04□□□□□ -1.44
CHMP4A-208ENST00000534106 CDKN2AIPQ9NXV6 580 aaPredicted RBP6.04□□□□□ -1.44
CHMP4A-208ENST00000534106 SMARCA2P51531 1590 aa6.03□□□□□ -1.44
CHMP4A-208ENST00000534106 KCNC4Q03721 635 aa6.03□□□□□ -1.44
CHMP4A-208ENST00000534106 FAM98CQ17RN3 349 aaKnown RBP6.03□□□□□ -1.44
CHMP4A-208ENST00000534106 CFAP44Q96MT7 982 aa6.03□□□□□ -1.44
CHMP4A-208ENST00000534106 WBP1LQ9NX94 342 aa6.03□□□□□ -1.44
CHMP4A-208ENST00000534106 HPS5Q9UPZ3 1129 aa6.03□□□□□ -1.44
CHMP4A-208ENST00000534106 GRXCR2A6NFK2 248 aa6.02□□□□□ -1.45
CHMP4A-208ENST00000534106 CYB5RLQ6IPT4 315 aa6.02□□□□□ -1.45
CHMP4A-208ENST00000534106 TSR3Q9UJK0 312 aaKnown RBP6.02□□□□□ -1.45
CHMP4A-208ENST00000534106 THOC2Q8NI27 1593 aaKnown RBP6.01□□□□□ -1.45
CHMP4A-208ENST00000534106 SPDYE16A6NNV3 312 aaPredicted RBP6.01□□□□□ -1.45
CHMP4A-208ENST00000534106 PPP4CP60510 307 aa6.01□□□□□ -1.45
CHMP4A-208ENST00000534106 EN1Q05925 392 aaPredicted RBP6.01□□□□□ -1.45
CHMP4A-208ENST00000534106 TSR1Q2NL82 804 aaKnown RBP6.01□□□□□ -1.45
CHMP4A-208ENST00000534106 ITGBL1O95965 494 aaPredicted RBP6□□□□□ -1.45
CHMP4A-208ENST00000534106 PDIA6Q15084 440 aa6□□□□□ -1.45
CHMP4A-208ENST00000534106 E2F4Q16254 413 aa6□□□□□ -1.45
CHMP4A-208ENST00000534106 PAXIP1Q6ZW49 1069 aaPredicted RBP6□□□□□ -1.45
CHMP4A-208ENST00000534106 PDS5BQ9NTI5 1447 aa5.99□□□□□ -1.45
CHMP4A-208ENST00000534106 HDGFP51858 240 aaKnown RBP5.99□□□□□ -1.45
CHMP4A-208ENST00000534106 TSKSQ9UJT2 592 aa5.99□□□□□ -1.45
CHMP4A-208ENST00000534106 SMAPO00193 183 aa5.98□□□□□ -1.45
CHMP4A-208ENST00000534106 RNF40O75150 1001 aa5.98□□□□□ -1.45
CHMP4A-208ENST00000534106 CDCA7LQ96GN5 454 aa5.98□□□□□ -1.45
CHMP4A-208ENST00000534106 PNMA3Q9UL41 463 aa5.98□□□□□ -1.45
CHMP4A-208ENST00000534106 PRSS12P56730 875 aa5.97□□□□□ -1.45
CHMP4A-208ENST00000534106 CERKQ8TCT0 537 aa5.97□□□□□ -1.45
CHMP4A-208ENST00000534106 BAZ1BQ9UIG0 1483 aaKnown RBP5.96□□□□□ -1.45
CHMP4A-208ENST00000534106 CADPSQ9ULU8 1353 aa5.96□□□□□ -1.45
CHMP4A-208ENST00000534106 NBPF26B4DH59 902 aa5.96□□□□□ -1.46
CHMP4A-208ENST00000534106 Q6ZNB5 142 aa5.96□□□□□ -1.46
CHMP4A-208ENST00000534106 SAMD7Q7Z3H4 446 aa5.96□□□□□ -1.46
CHMP4A-208ENST00000534106 AMER1Q5JTC6 1135 aaPredicted RBP5.95□□□□□ -1.46
CHMP4A-208ENST00000534106 TATDN2Q93075 761 aa5.95□□□□□ -1.46
CHMP4A-208ENST00000534106 MRC2Q9UBG0 1479 aa5.94□□□□□ -1.46
CHMP4A-208ENST00000534106 HMGXB3Q12766 1538 aa5.94□□□□□ -1.46
CHMP4A-208ENST00000534106 NUDT18Q6ZVK8 323 aa5.93□□□□□ -1.46
CHMP4A-208ENST00000534106 KIF21AQ7Z4S6 1674 aa5.93□□□□□ -1.46
CHMP4A-208ENST00000534106 CDHR5Q9HBB8 845 aa5.92□□□□□ -1.46
CHMP4A-208ENST00000534106 FAM198AQ9UFP1 575 aa5.92□□□□□ -1.46
CHMP4A-208ENST00000534106 LAMC3Q9Y6N6 1575 aa5.92□□□□□ -1.46
CHMP4A-208ENST00000534106 SLC4A3P48751 1232 aa5.91□□□□□ -1.46
CHMP4A-208ENST00000534106 IL21Q9HBE4 155 aa5.91□□□□□ -1.46
CHMP4A-208ENST00000534106 BAZ1AQ9NRL2 1556 aaPredicted RBP5.91□□□□□ -1.46
CHMP4A-208ENST00000534106 RIMBP3CA6NJZ7 1639 aa5.91□□□□□ -1.46
CHMP4A-208ENST00000534106 RIMBP3BA6NNM3 1639 aa5.91□□□□□ -1.46
CHMP4A-208ENST00000534106 SMARCA4P51532 1647 aa5.91□□□□□ -1.46
CHMP4A-208ENST00000534106 RIMBP3Q9UFD9 1639 aa5.91□□□□□ -1.46
CHMP4A-208ENST00000534106 OSBPP22059 807 aa5.9□□□□□ -1.46
CHMP4A-208ENST00000534106 PRIM1P49642 420 aaKnown RBP5.9□□□□□ -1.46
CHMP4A-208ENST00000534106 NECTIN2Q92692 538 aa5.9□□□□□ -1.46
CHMP4A-208ENST00000534106 MTRQ99707 1265 aa5.9□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 118.6 ms