RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 VPS9D1Q9Y2B5 631 aa10.25□□□□□ -0.77
CD44-235ENST00000532339 STAC3Q96MF2 364 aa10.24□□□□□ -0.77
CD44-235ENST00000532339 PPP1R3GB7ZBB8 358 aa10.23□□□□□ -0.77
CD44-235ENST00000532339 ZBED2Q9BTP6 218 aa10.22□□□□□ -0.77
CD44-235ENST00000532339 NBR1Q14596 966 aa10.2□□□□□ -0.78
CD44-235ENST00000532339 C6orf132Q5T0Z8 1188 aa10.19□□□□□ -0.78
CD44-235ENST00000532339 ARHGEF1Q92888 912 aaKnown RBP10.19□□□□□ -0.78
CD44-235ENST00000532339 RBM33Q96EV2 1170 aaKnown RBP10.19□□□□□ -0.78
CD44-235ENST00000532339 COL9A1P20849 921 aa10.17□□□□□ -0.78
CD44-235ENST00000532339 EN1Q05925 392 aaPredicted RBP10.17□□□□□ -0.78
CD44-235ENST00000532339 GRXCR2A6NFK2 248 aa10.16□□□□□ -0.78
CD44-235ENST00000532339 KCNV2Q8TDN2 545 aa10.16□□□□□ -0.78
CD44-235ENST00000532339 BHMG1C9JSJ3 638 aaPredicted RBP10.15□□□□□ -0.78
CD44-235ENST00000532339 MAP3K7O43318 606 aa10.15□□□□□ -0.78
CD44-235ENST00000532339 P3H3Q8IVL6 736 aa10.15□□□□□ -0.78
CD44-235ENST00000532339 NBPF3Q9H094 633 aa10.15□□□□□ -0.78
CD44-235ENST00000532339 HAP1P54257 671 aaPredicted RBP10.13□□□□□ -0.79
CD44-235ENST00000532339 MRPL50Q8N5N7 158 aaKnown RBP10.13□□□□□ -0.79
CD44-235ENST00000532339 RABGEF1Q9UJ41 708 aa10.13□□□□□ -0.79
CD44-235ENST00000532339 ONECUT3O60422 494 aaPredicted RBP10.12□□□□□ -0.79
CD44-235ENST00000532339 PROX2Q3B8N5 592 aa10.12□□□□□ -0.79
CD44-235ENST00000532339 HCSTQ9UBK5 93 aa10.12□□□□□ -0.79
CD44-235ENST00000532339 GOLGA8CPA6NN73 597 aa10.11□□□□□ -0.79
CD44-235ENST00000532339 TSR1Q2NL82 804 aaKnown RBP10.11□□□□□ -0.79
CD44-235ENST00000532339 KCTD12Q96CX2 325 aaKnown RBP10.11□□□□□ -0.79
CD44-235ENST00000532339 OSBPP22059 807 aa10.09□□□□□ -0.79
CD44-235ENST00000532339 TRIM6-TRIM34B2RNG4 842 aa10.08□□□□□ -0.8
CD44-235ENST00000532339 PRIM1P49642 420 aaKnown RBP10.08□□□□□ -0.8
CD44-235ENST00000532339 CERKQ8TCT0 537 aa10.08□□□□□ -0.8
CD44-235ENST00000532339 KIAA1468Q9P260 1216 aa10.08□□□□□ -0.8
CD44-235ENST00000532339 LAPTM4BQ86VI4 370 aa10.06□□□□□ -0.8
CD44-235ENST00000532339 WNT2BQ93097 391 aa10.06□□□□□ -0.8
CD44-235ENST00000532339 MLLT3P42568 568 aaPredicted RBP10.03□□□□□ -0.8
CD44-235ENST00000532339 THSD4Q6ZMP0 1018 aa10.03□□□□□ -0.8
CD44-235ENST00000532339 PACS2Q86VP3 889 aa10.03□□□□□ -0.8
CD44-235ENST00000532339 PRSS12P56730 875 aa10.02□□□□□ -0.81
CD44-235ENST00000532339 CDCA7LQ96GN5 454 aa10.02□□□□□ -0.81
CD44-235ENST00000532339 PTPN5P54829 565 aa10.01□□□□□ -0.81
CD44-235ENST00000532339 ANKK1Q8NFD2 765 aa10.01□□□□□ -0.81
CD44-235ENST00000532339 CDHR5Q9HBB8 845 aa10.01□□□□□ -0.81
CD44-235ENST00000532339 TSKSQ9UJT2 592 aa10.01□□□□□ -0.81
CD44-235ENST00000532339 SEPT9Q9UHD8 586 aaPredicted RBP10□□□□□ -0.81
CD44-235ENST00000532339 FAM98CQ17RN3 349 aaKnown RBP9.99□□□□□ -0.81
CD44-235ENST00000532339 ZFRQ96KR1 1074 aaKnown RBP9.99□□□□□ -0.81
CD44-235ENST00000532339 RBM27Q9P2N5 1060 aaKnown RBP9.99□□□□□ -0.81
CD44-235ENST00000532339 KDM2AQ9Y2K7 1162 aa9.98□□□□□ -0.81
CD44-235ENST00000532339 SEMA3EO15041 775 aa9.97□□□□□ -0.81
CD44-235ENST00000532339 VSIG10Q8N0Z9 540 aa9.97□□□□□ -0.81
CD44-235ENST00000532339 NBPF26B4DH59 902 aa9.96□□□□□ -0.82
CD44-235ENST00000532339 SOWAHBA6NEL2 793 aa9.95□□□□□ -0.82
CD44-235ENST00000532339 NPDC1Q9NQX5 325 aaPredicted RBP9.95□□□□□ -0.82
CD44-235ENST00000532339 PLA2G2EQ9NZK7 142 aa9.95□□□□□ -0.82
CD44-235ENST00000532339 FAM198AQ9UFP1 575 aa9.95□□□□□ -0.82
CD44-235ENST00000532339 BCAMP50895 628 aa9.93□□□□□ -0.82
CD44-235ENST00000532339 TATDN2Q93075 761 aa9.93□□□□□ -0.82
CD44-235ENST00000532339 PNMA3Q9UL41 463 aa9.93□□□□□ -0.82
CD44-235ENST00000532339 SMYD5Q6GMV2 418 aa9.92□□□□□ -0.82
CD44-235ENST00000532339 PADI6Q6TGC4 694 aa9.92□□□□□ -0.82
CD44-235ENST00000532339 TTC13Q8NBP0 860 aa9.92□□□□□ -0.82
CD44-235ENST00000532339 LRCH3Q96II8 777 aa9.92□□□□□ -0.82
CD44-235ENST00000532339 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.92□□□□□ -0.82
CD44-235ENST00000532339 TESPA1A2RU30 521 aaPredicted RBP9.91□□□□□ -0.82
CD44-235ENST00000532339 SMAPO00193 183 aa9.91□□□□□ -0.82
CD44-235ENST00000532339 NUTM2FA1L443 756 aa9.9□□□□□ -0.82
CD44-235ENST00000532339 PTGDRQ13258 359 aa9.9□□□□□ -0.82
CD44-235ENST00000532339 NYAP1Q6ZVC0 841 aa9.9□□□□□ -0.82
CD44-235ENST00000532339 NUDT18Q6ZVK8 323 aa9.9□□□□□ -0.82
CD44-235ENST00000532339 C3orf80F5H4A9 247 aa9.88□□□□□ -0.83
CD44-235ENST00000532339 TSR3Q9UJK0 312 aaKnown RBP9.88□□□□□ -0.83
CD44-235ENST00000532339 HPS5Q9UPZ3 1129 aa9.87□□□□□ -0.83
CD44-235ENST00000532339 FCHSD2O94868 740 aa9.86□□□□□ -0.83
CD44-235ENST00000532339 HDGFP51858 240 aaKnown RBP9.86□□□□□ -0.83
CD44-235ENST00000532339 SAMD7Q7Z3H4 446 aa9.86□□□□□ -0.83
CD44-235ENST00000532339 WBP1LQ9NX94 342 aa9.86□□□□□ -0.83
CD44-235ENST00000532339 PPP4CP60510 307 aa9.83□□□□□ -0.84
CD44-235ENST00000532339 RBM26Q5T8P6 1007 aaKnown RBP9.83□□□□□ -0.84
CD44-235ENST00000532339 IFFO2Q5TF58 517 aa9.82□□□□□ -0.84
CD44-235ENST00000532339 EYA1Q99502 592 aa9.82□□□□□ -0.84
CD44-235ENST00000532339 RBM46Q8TBY0 533 aaKnown RBP9.81□□□□□ -0.84
CD44-235ENST00000532339 HIC1Q14526 733 aa9.8□□□□□ -0.84
CD44-235ENST00000532339 SLC4A3P48751 1232 aa9.79□□□□□ -0.84
CD44-235ENST00000532339 NECTIN2Q92692 538 aa9.79□□□□□ -0.84
CD44-235ENST00000532339 ADGRG1Q9Y653 693 aa9.79□□□□□ -0.84
CD44-235ENST00000532339 TULP1O00294 542 aaPredicted RBP9.78□□□□□ -0.84
CD44-235ENST00000532339 RNF40O75150 1001 aa9.78□□□□□ -0.84
CD44-235ENST00000532339 ITGBL1O95965 494 aaPredicted RBP9.78□□□□□ -0.84
CD44-235ENST00000532339 SWT1Q5T5J6 900 aaKnown RBP9.78□□□□□ -0.84
CD44-235ENST00000532339 SLF2Q8IX21 1173 aa9.78□□□□□ -0.84
CD44-235ENST00000532339 DNAJB2P25686 324 aa9.76□□□□□ -0.85
CD44-235ENST00000532339 GNPATO15228 680 aa9.75□□□□□ -0.85
CD44-235ENST00000532339 OATP04181 439 aa9.74□□□□□ -0.85
CD44-235ENST00000532339 KCNC4Q03721 635 aa9.74□□□□□ -0.85
CD44-235ENST00000532339 GPIHBP1Q8IV16 184 aa9.74□□□□□ -0.85
CD44-235ENST00000532339 GPR37O15354 613 aa9.73□□□□□ -0.85
CD44-235ENST00000532339 FAM161AQ3B820 660 aa9.73□□□□□ -0.85
CD44-235ENST00000532339 A0A0G2JS52 829 aa9.72□□□□□ -0.85
CD44-235ENST00000532339 RCCD1A6NED2 376 aa9.72□□□□□ -0.85
CD44-235ENST00000532339 TMEM134Q9H6X4 195 aa9.72□□□□□ -0.85
CD44-235ENST00000532339 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.71□□□□□ -0.86
CD44-235ENST00000532339 PXYLP1Q8TE99 480 aa9.7□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms