RNA–Protein interactions for RNA: ENST00000528930.5

SSBP3-212, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 1 (best)

Gene SSBP3, Length 862 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-212ENST00000528930 ABCA6Q8N139 1617 aa14.42□□□□□ -0.1
SSBP3-212ENST00000528930 SCAPERQ9BY12 1400 aa14.41□□□□□ -0.1
SSBP3-212ENST00000528930 RNF17Q9BXT8 1623 aaKnown RBP14.41□□□□□ -0.1
SSBP3-212ENST00000528930 CNTLNQ9NXG0 1405 aa14.41□□□□□ -0.1
SSBP3-212ENST00000528930 NEURL4Q96JN8 1562 aa14.4□□□□□ -0.1
SSBP3-212ENST00000528930 SHANK2Q9UPX8 1470 aa14.4□□□□□ -0.1
SSBP3-212ENST00000528930 PRR29P0C7W0 189 aa14.4□□□□□ -0.1
SSBP3-212ENST00000528930 NUP153P49790 1475 aaKnown RBP14.38□□□□□ -0.11
SSBP3-212ENST00000528930 VWDEQ8N2E2 1590 aa14.38□□□□□ -0.11
SSBP3-212ENST00000528930 MYO5CQ9NQX4 1742 aa14.36□□□□□ -0.11
SSBP3-212ENST00000528930 GABBR2O75899 941 aa14.36□□□□□ -0.11
SSBP3-212ENST00000528930 ZNF518AQ6AHZ1 1483 aa14.36□□□□□ -0.11
SSBP3-212ENST00000528930 SAMD9Q5K651 1589 aa14.35□□□□□ -0.11
SSBP3-212ENST00000528930 STRCP1A6NGW2 1772 aa14.34□□□□□ -0.11
SSBP3-212ENST00000528930 UPF1Q92900 1129 aaKnown RBP eCLIP14.34□□□□□ -0.113e-13■□□□□ 10
SSBP3-212ENST00000528930 SRCAPQ6ZRS2 3230 aa14.34□□□□□ -0.11
SSBP3-212ENST00000528930 SYNMO15061 1565 aa14.33□□□□□ -0.12
SSBP3-212ENST00000528930 PLCH2O75038 1416 aa14.32□□□□□ -0.12
SSBP3-212ENST00000528930 DNMT1P26358 1616 aaKnown RBP14.31□□□□□ -0.12
SSBP3-212ENST00000528930 CSRNP3Q8WYN3 585 aa14.3□□□□□ -0.12
SSBP3-212ENST00000528930 CLTCQ00610 1675 aaKnown RBP14.3□□□□□ -0.12
SSBP3-212ENST00000528930 MLH3Q9UHC1 1453 aa14.27□□□□□ -0.12
SSBP3-212ENST00000528930 ESF1Q9H501 851 aaKnown RBP14.27□□□□□ -0.13
SSBP3-212ENST00000528930 FAM9AQ8IZU1 332 aaPredicted RBP14.26□□□□□ -0.13
SSBP3-212ENST00000528930 XIRP1Q702N8 1843 aaKnown RBP14.26□□□□□ -0.13
SSBP3-212ENST00000528930 KIDINS220Q9ULH0 1771 aa14.26□□□□□ -0.13
SSBP3-212ENST00000528930 LRRC7Q96NW7 1537 aa14.25□□□□□ -0.13
SSBP3-212ENST00000528930 ZMYM3Q14202 1370 aa14.24□□□□□ -0.13
SSBP3-212ENST00000528930 A2ML1A8K2U0 1454 aa14.24□□□□□ -0.13
SSBP3-212ENST00000528930 DEPDC5O75140 1603 aa14.23□□□□□ -0.13
SSBP3-212ENST00000528930 PLEKHD1A6NEE1 506 aa14.23□□□□□ -0.13
SSBP3-212ENST00000528930 PRXQ9BXM0 1461 aa14.21□□□□□ -0.13
SSBP3-212ENST00000528930 IQGAP1P46940 1657 aa14.2□□□□□ -0.14
SSBP3-212ENST00000528930 ITSN2Q9NZM3 1697 aa14.19□□□□□ -0.14
SSBP3-212ENST00000528930 MED14O60244 1454 aa14.18□□□□□ -0.14
SSBP3-212ENST00000528930 CD44P16070 742 aaKnown RBP14.18□□□□□ -0.14
SSBP3-212ENST00000528930 P3H3Q8IVL6 736 aa14.18□□□□□ -0.14
SSBP3-212ENST00000528930 FARP1Q9Y4F1 1045 aaPredicted RBP14.18□□□□□ -0.14
SSBP3-212ENST00000528930 AFAP1Q8N556 730 aa14.17□□□□□ -0.14
SSBP3-212ENST00000528930 EFCAB2Q5VUJ9 269 aa14.16□□□□□ -0.14
SSBP3-212ENST00000528930 CDK13Q14004 1512 aaKnown RBP14.15□□□□□ -0.14
SSBP3-212ENST00000528930 CDC42BPBQ9Y5S2 1711 aa14.15□□□□□ -0.14
SSBP3-212ENST00000528930 ROBO1Q9Y6N7 1651 aa14.14□□□□□ -0.15
SSBP3-212ENST00000528930 LHX8Q68G74 356 aa14.14□□□□□ -0.15
SSBP3-212ENST00000528930 KIF14Q15058 1648 aa14.14□□□□□ -0.15
SSBP3-212ENST00000528930 ABCC1P33527 1531 aa14.14□□□□□ -0.15
SSBP3-212ENST00000528930 FAM135BQ49AJ0 1406 aa14.14□□□□□ -0.15
SSBP3-212ENST00000528930 ZC3H13Q5T200 1668 aaKnown RBP14.14□□□□□ -0.15
SSBP3-212ENST00000528930 CDK12Q9NYV4 1490 aaPredicted RBP14.13□□□□□ -0.15
SSBP3-212ENST00000528930 EEA1Q15075 1411 aa14.13□□□□□ -0.15
SSBP3-212ENST00000528930 PLXNC1O60486 1568 aa14.13□□□□□ -0.15
SSBP3-212ENST00000528930 ARHGAP5Q13017 1502 aa14.12□□□□□ -0.15
SSBP3-212ENST00000528930 NPHP4O75161 1426 aaPredicted RBP14.12□□□□□ -0.15
SSBP3-212ENST00000528930 SETBP1Q9Y6X0 1596 aa14.11□□□□□ -0.15
SSBP3-212ENST00000528930 POTEIP0CG38 1075 aa14.09□□□□□ -0.15
SSBP3-212ENST00000528930 PREX2Q70Z35 1606 aa14.08□□□□□ -0.16
SSBP3-212ENST00000528930 PHLPP1O60346 1717 aa14.07□□□□□ -0.16
SSBP3-212ENST00000528930 MYT1LQ9UL68 1186 aa14.07□□□□□ -0.16
SSBP3-212ENST00000528930 TRIM52Q96A61 297 aa14.05□□□□□ -0.16
SSBP3-212ENST00000528930 EHMT2Q96KQ7 1210 aa14.05□□□□□ -0.16
SSBP3-212ENST00000528930 LRP5O75197 1615 aa14.04□□□□□ -0.16
SSBP3-212ENST00000528930 LRP6O75581 1613 aa14.04□□□□□ -0.16
SSBP3-212ENST00000528930 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP14.04□□□□□ -0.16
SSBP3-212ENST00000528930 SAMD9LQ8IVG5 1584 aa14.04□□□□□ -0.16
SSBP3-212ENST00000528930 COL16A1Q07092 1604 aaPredicted RBP14.02□□□□□ -0.16
SSBP3-212ENST00000528930 ANKLE2Q86XL3 938 aa14.02□□□□□ -0.17
SSBP3-212ENST00000528930 UGGT1Q9NYU2 1555 aa14□□□□□ -0.17
SSBP3-212ENST00000528930 ZNF772Q68DY9 489 aaPredicted RBP14□□□□□ -0.17
SSBP3-212ENST00000528930 INO80Q9ULG1 1556 aaPredicted RBP14□□□□□ -0.17
SSBP3-212ENST00000528930 KDM5DQ9BY66 1539 aa14□□□□□ -0.17
SSBP3-212ENST00000528930 JCADQ9P266 1359 aa13.99□□□□□ -0.17
SSBP3-212ENST00000528930 SHPRHQ149N8 1683 aa13.99□□□□□ -0.17
SSBP3-212ENST00000528930 CREBZFQ9NS37 354 aa13.99□□□□□ -0.17
SSBP3-212ENST00000528930 LRRC9Q6ZRR7 1453 aa13.99□□□□□ -0.17
SSBP3-212ENST00000528930 TNRQ92752 1358 aa13.98□□□□□ -0.17
SSBP3-212ENST00000528930 ATP7AQ04656 1500 aa13.98□□□□□ -0.17
SSBP3-212ENST00000528930 ADGBQ8N7X0 1667 aa13.98□□□□□ -0.17
SSBP3-212ENST00000528930 NLRP1Q9C000 1473 aa13.97□□□□□ -0.17
SSBP3-212ENST00000528930 FAM135AQ9P2D6 1515 aa13.96□□□□□ -0.17
SSBP3-212ENST00000528930 CDC42BPAQ5VT25 1732 aa13.96□□□□□ -0.17
SSBP3-212ENST00000528930 PZPP20742 1482 aa13.96□□□□□ -0.17
SSBP3-212ENST00000528930 IFFO2Q5TF58 517 aa13.96□□□□□ -0.17
SSBP3-212ENST00000528930 ZRANB1Q9UGI0 708 aa13.96□□□□□ -0.17
SSBP3-212ENST00000528930 MAP3K1Q13233 1512 aa13.95□□□□□ -0.18
SSBP3-212ENST00000528930 RGS12O14924 1447 aa13.95□□□□□ -0.18
SSBP3-212ENST00000528930 A2MP01023 1474 aa13.94□□□□□ -0.18
SSBP3-212ENST00000528930 RXRBP28702 533 aa13.94□□□□□ -0.18
SSBP3-212ENST00000528930 SPDYE4A6NLX3 237 aa13.93□□□□□ -0.18
SSBP3-212ENST00000528930 THEMISQ8N1K5 641 aaPredicted RBP13.93□□□□□ -0.18
SSBP3-212ENST00000528930 LRRIQ1Q96JM4 1722 aa13.93□□□□□ -0.18
SSBP3-212ENST00000528930 TROQ12816 1431 aaPredicted RBP13.92□□□□□ -0.18
SSBP3-212ENST00000528930 FGD6Q6ZV73 1430 aa13.92□□□□□ -0.18
SSBP3-212ENST00000528930 DCBLD2Q96PD2 775 aa13.91□□□□□ -0.18
SSBP3-212ENST00000528930 SPATA31A6Q5VVP1 1343 aa13.9□□□□□ -0.18
SSBP3-212ENST00000528930 RBM33Q96EV2 1170 aaKnown RBP13.9□□□□□ -0.18
SSBP3-212ENST00000528930 UBR1Q8IWV7 1749 aa13.9□□□□□ -0.18
SSBP3-212ENST00000528930 RANGAP1P46060 587 aaPredicted RBP13.89□□□□□ -0.19
SSBP3-212ENST00000528930 STAG3Q9UJ98 1225 aa13.89□□□□□ -0.19
SSBP3-212ENST00000528930 SYCP2Q9BX26 1530 aa13.89□□□□□ -0.19
SSBP3-212ENST00000528930 TIAM1Q13009 1591 aa13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms