RNA–Protein interactions for RNA: ENST00000525685.5

CD44-219, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 728 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-219ENST00000525685 KCNV2Q8TDN2 545 aa9.64□□□□□ -0.87
CD44-219ENST00000525685 ZBED2Q9BTP6 218 aa9.64□□□□□ -0.87
CD44-219ENST00000525685 VPS9D1Q9Y2B5 631 aa9.64□□□□□ -0.87
CD44-219ENST00000525685 PPP1R3GB7ZBB8 358 aa9.62□□□□□ -0.87
CD44-219ENST00000525685 COL9A1P20849 921 aa9.61□□□□□ -0.87
CD44-219ENST00000525685 NBR1Q14596 966 aa9.61□□□□□ -0.87
CD44-219ENST00000525685 C6orf132Q5T0Z8 1188 aa9.61□□□□□ -0.87
CD44-219ENST00000525685 ARHGEF1Q92888 912 aaKnown RBP9.61□□□□□ -0.87
CD44-219ENST00000525685 HAP1P54257 671 aaPredicted RBP9.6□□□□□ -0.87
CD44-219ENST00000525685 EN1Q05925 392 aaPredicted RBP9.6□□□□□ -0.87
CD44-219ENST00000525685 RBM33Q96EV2 1170 aaKnown RBP9.6□□□□□ -0.87
CD44-219ENST00000525685 SLC24A1O60721 1099 aa9.59□□□□□ -0.87
CD44-219ENST00000525685 GRXCR2A6NFK2 248 aa9.58□□□□□ -0.88
CD44-219ENST00000525685 BHMG1C9JSJ3 638 aaPredicted RBP9.57□□□□□ -0.88
CD44-219ENST00000525685 PRIM1P49642 420 aaKnown RBP9.57□□□□□ -0.88
CD44-219ENST00000525685 MAP3K7O43318 606 aa9.56□□□□□ -0.88
CD44-219ENST00000525685 PROX2Q3B8N5 592 aa9.56□□□□□ -0.88
CD44-219ENST00000525685 P3H3Q8IVL6 736 aa9.56□□□□□ -0.88
CD44-219ENST00000525685 OSBPP22059 807 aa9.55□□□□□ -0.88
CD44-219ENST00000525685 TSR1Q2NL82 804 aaKnown RBP9.55□□□□□ -0.88
CD44-219ENST00000525685 STAC3Q96MF2 364 aa9.54□□□□□ -0.88
CD44-219ENST00000525685 KDM2AQ9Y2K7 1162 aa9.53□□□□□ -0.88
CD44-219ENST00000525685 RABGEF1Q9UJ41 708 aa9.52□□□□□ -0.89
CD44-219ENST00000525685 ONECUT3O60422 494 aaPredicted RBP9.51□□□□□ -0.89
CD44-219ENST00000525685 MLLT3P42568 568 aaPredicted RBP9.51□□□□□ -0.89
CD44-219ENST00000525685 NBPF3Q9H094 633 aa9.51□□□□□ -0.89
CD44-219ENST00000525685 MRPL50Q8N5N7 158 aaKnown RBP9.5□□□□□ -0.89
CD44-219ENST00000525685 TRIM6-TRIM34B2RNG4 842 aa9.49□□□□□ -0.89
CD44-219ENST00000525685 KCTD12Q96CX2 325 aaKnown RBP9.49□□□□□ -0.89
CD44-219ENST00000525685 KIAA1468Q9P260 1216 aa9.49□□□□□ -0.89
CD44-219ENST00000525685 CERKQ8TCT0 537 aa9.47□□□□□ -0.89
CD44-219ENST00000525685 CDHR5Q9HBB8 845 aa9.47□□□□□ -0.89
CD44-219ENST00000525685 SEMA3EO15041 775 aa9.46□□□□□ -0.9
CD44-219ENST00000525685 VSIG10Q8N0Z9 540 aa9.46□□□□□ -0.9
CD44-219ENST00000525685 HCSTQ9UBK5 93 aa9.46□□□□□ -0.9
CD44-219ENST00000525685 TSKSQ9UJT2 592 aa9.46□□□□□ -0.9
CD44-219ENST00000525685 PRSS12P56730 875 aa9.45□□□□□ -0.9
CD44-219ENST00000525685 CDCA7LQ96GN5 454 aa9.45□□□□□ -0.9
CD44-219ENST00000525685 GOLGA8CPA6NN73 597 aa9.44□□□□□ -0.9
CD44-219ENST00000525685 LAPTM4BQ86VI4 370 aa9.44□□□□□ -0.9
CD44-219ENST00000525685 THSD4Q6ZMP0 1018 aa9.43□□□□□ -0.9
CD44-219ENST00000525685 WNT2BQ93097 391 aa9.43□□□□□ -0.9
CD44-219ENST00000525685 NPDC1Q9NQX5 325 aaPredicted RBP9.43□□□□□ -0.9
CD44-219ENST00000525685 FAM198AQ9UFP1 575 aa9.43□□□□□ -0.9
CD44-219ENST00000525685 SEPT9Q9UHD8 586 aaPredicted RBP9.43□□□□□ -0.9
CD44-219ENST00000525685 PACS2Q86VP3 889 aa9.41□□□□□ -0.9
CD44-219ENST00000525685 RBM27Q9P2N5 1060 aaKnown RBP9.41□□□□□ -0.9
CD44-219ENST00000525685 TESPA1A2RU30 521 aaPredicted RBP9.4□□□□□ -0.9
CD44-219ENST00000525685 FAM98CQ17RN3 349 aaKnown RBP9.4□□□□□ -0.9
CD44-219ENST00000525685 ZFRQ96KR1 1074 aaKnown RBP9.4□□□□□ -0.9
CD44-219ENST00000525685 PTPN5P54829 565 aa9.39□□□□□ -0.91
CD44-219ENST00000525685 TTC13Q8NBP0 860 aa9.39□□□□□ -0.91
CD44-219ENST00000525685 ANKK1Q8NFD2 765 aa9.39□□□□□ -0.91
CD44-219ENST00000525685 C3orf80F5H4A9 247 aa9.38□□□□□ -0.91
CD44-219ENST00000525685 SMAPO00193 183 aa9.36□□□□□ -0.91
CD44-219ENST00000525685 PTGDRQ13258 359 aa9.36□□□□□ -0.91
CD44-219ENST00000525685 PADI6Q6TGC4 694 aa9.36□□□□□ -0.91
CD44-219ENST00000525685 TATDN2Q93075 761 aa9.36□□□□□ -0.91
CD44-219ENST00000525685 SOWAHBA6NEL2 793 aa9.35□□□□□ -0.91
CD44-219ENST00000525685 NBPF26B4DH59 902 aa9.35□□□□□ -0.91
CD44-219ENST00000525685 BCAMP50895 628 aa9.35□□□□□ -0.91
CD44-219ENST00000525685 NUTM2FA1L443 756 aa9.34□□□□□ -0.91
CD44-219ENST00000525685 PNMA3Q9UL41 463 aa9.34□□□□□ -0.91
CD44-219ENST00000525685 NUDT18Q6ZVK8 323 aa9.33□□□□□ -0.92
CD44-219ENST00000525685 SMYD5Q6GMV2 418 aa9.32□□□□□ -0.92
CD44-219ENST00000525685 RBM26Q5T8P6 1007 aaKnown RBP9.31□□□□□ -0.92
CD44-219ENST00000525685 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.31□□□□□ -0.92
CD44-219ENST00000525685 PLA2G2EQ9NZK7 142 aa9.31□□□□□ -0.92
CD44-219ENST00000525685 LRCH3Q96II8 777 aa9.3□□□□□ -0.92
CD44-219ENST00000525685 FCHSD2O94868 740 aa9.29□□□□□ -0.92
CD44-219ENST00000525685 SAMD7Q7Z3H4 446 aa9.29□□□□□ -0.92
CD44-219ENST00000525685 WBP1LQ9NX94 342 aa9.29□□□□□ -0.92
CD44-219ENST00000525685 EYA1Q99502 592 aa9.28□□□□□ -0.92
CD44-219ENST00000525685 TSR3Q9UJK0 312 aaKnown RBP9.27□□□□□ -0.93
CD44-219ENST00000525685 HPS5Q9UPZ3 1129 aa9.27□□□□□ -0.93
CD44-219ENST00000525685 GPR37O15354 613 aa9.26□□□□□ -0.93
CD44-219ENST00000525685 NYAP1Q6ZVC0 841 aa9.26□□□□□ -0.93
CD44-219ENST00000525685 ADGRG1Q9Y653 693 aa9.25□□□□□ -0.93
CD44-219ENST00000525685 HIC1Q14526 733 aa9.24□□□□□ -0.93
CD44-219ENST00000525685 PPP4CP60510 307 aa9.22□□□□□ -0.93
CD44-219ENST00000525685 FAM161AQ3B820 660 aa9.22□□□□□ -0.93
CD44-219ENST00000525685 SWT1Q5T5J6 900 aaKnown RBP9.22□□□□□ -0.93
CD44-219ENST00000525685 RBM46Q8TBY0 533 aaKnown RBP9.22□□□□□ -0.93
CD44-219ENST00000525685 GNPATO15228 680 aa9.21□□□□□ -0.94
CD44-219ENST00000525685 HDGFP51858 240 aaKnown RBP9.21□□□□□ -0.94
CD44-219ENST00000525685 IFFO2Q5TF58 517 aa9.21□□□□□ -0.94
CD44-219ENST00000525685 ITGBL1O95965 494 aaPredicted RBP9.2□□□□□ -0.94
CD44-219ENST00000525685 FECHP22830 423 aa9.2□□□□□ -0.94
CD44-219ENST00000525685 DNAJB2P25686 324 aa9.19□□□□□ -0.94
CD44-219ENST00000525685 GPIHBP1Q8IV16 184 aa9.19□□□□□ -0.94
CD44-219ENST00000525685 RCCD1A6NED2 376 aa9.18□□□□□ -0.94
CD44-219ENST00000525685 SLF2Q8IX21 1173 aa9.18□□□□□ -0.94
CD44-219ENST00000525685 TMEM134Q9H6X4 195 aa9.18□□□□□ -0.94
CD44-219ENST00000525685 RNF40O75150 1001 aa9.17□□□□□ -0.94
CD44-219ENST00000525685 OATP04181 439 aa9.17□□□□□ -0.94
CD44-219ENST00000525685 PXYLP1Q8TE99 480 aa9.17□□□□□ -0.94
CD44-219ENST00000525685 TULP1O00294 542 aaPredicted RBP9.16□□□□□ -0.94
CD44-219ENST00000525685 METTL3Q86U44 580 aaKnown RBP9.15□□□□□ -0.94
CD44-219ENST00000525685 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.14□□□□□ -0.95
CD44-219ENST00000525685 APLP1P51693 650 aa9.14□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 116.4 ms