RNA–Protein interactions for RNA: ENST00000525284.5

LRRK1-202, Transcript of leucine rich repeat kinase 1, humanhuman

TSL 1 (best)

Gene LRRK1, Length 6,494 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRK1-202ENST00000525284 SIN3AQ96ST3 1273 aa16.85■□□□□ 0.29
LRRK1-202ENST00000525284 SLC4A3P48751 1232 aa16.85■□□□□ 0.29
LRRK1-202ENST00000525284 FRAT2O75474 233 aaPredicted RBP16.84■□□□□ 0.29
LRRK1-202ENST00000525284 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.84■□□□□ 0.29
LRRK1-202ENST00000525284 HSP90B2PQ58FF3 399 aa16.84■□□□□ 0.29
LRRK1-202ENST00000525284 SKIDA1Q1XH10 827 aa16.84■□□□□ 0.29
LRRK1-202ENST00000525284 SLC4A10Q6U841 1118 aa16.84■□□□□ 0.29
LRRK1-202ENST00000525284 ACBD3Q9H3P7 528 aa16.83■□□□□ 0.28
LRRK1-202ENST00000525284 TSHZ2Q9NRE2 1034 aa16.83■□□□□ 0.28
LRRK1-202ENST00000525284 MNS1Q8NEH6 495 aa16.82■□□□□ 0.28
LRRK1-202ENST00000525284 ARGLU1Q9NWB6 273 aaPredicted RBP16.82■□□□□ 0.28
LRRK1-202ENST00000525284 TCEAL9Q9UHQ7 104 aa16.82■□□□□ 0.28
LRRK1-202ENST00000525284 AKAP17AQ02040 695 aaKnown RBP16.82■□□□□ 0.28
LRRK1-202ENST00000525284 DCTN1Q14203 1278 aa16.82■□□□□ 0.28
LRRK1-202ENST00000525284 FBXW7Q969H0 707 aa16.82■□□□□ 0.28
LRRK1-202ENST00000525284 STK31Q9BXU1 1019 aa16.81■□□□□ 0.28
LRRK1-202ENST00000525284 DHX37Q8IY37 1157 aaKnown RBP16.8■□□□□ 0.28
LRRK1-202ENST00000525284 CLUAP1Q96AJ1 413 aa16.8■□□□□ 0.28
LRRK1-202ENST00000525284 CEP162Q5TB80 1403 aa16.8■□□□□ 0.28
LRRK1-202ENST00000525284 CSB-PGBD3P0DP91 1061 aa16.8■□□□□ 0.28
LRRK1-202ENST00000525284 SKOR2Q2VWA4 1001 aaPredicted RBP16.8■□□□□ 0.28
LRRK1-202ENST00000525284 ANKRD20A12PQ8NF67 263 aa16.8■□□□□ 0.28
LRRK1-202ENST00000525284 SMC4Q9NTJ3 1288 aa16.8■□□□□ 0.28
LRRK1-202ENST00000525284 CWC15Q9P013 229 aaKnown RBP16.8■□□□□ 0.28
LRRK1-202ENST00000525284 CT47A1Q5JQC4 288 aaPredicted RBP16.79■□□□□ 0.28
LRRK1-202ENST00000525284 RAD21O60216 631 aa16.79■□□□□ 0.28
LRRK1-202ENST00000525284 TRHP20396 242 aaPredicted RBP16.79■□□□□ 0.28
LRRK1-202ENST00000525284 U2AF1L5P0DN76 240 aaPredicted RBP16.79■□□□□ 0.28
LRRK1-202ENST00000525284 U2AF1Q01081 240 aaKnown RBP eCLIP16.79■□□□□ 0.28
LRRK1-202ENST00000525284 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.78■□□□□ 0.28
LRRK1-202ENST00000525284 IFT57Q9NWB7 429 aa16.78■□□□□ 0.28
LRRK1-202ENST00000525284 ATP6V1DQ9Y5K8 247 aa16.78■□□□□ 0.28
LRRK1-202ENST00000525284 ODF2Q5BJF6 829 aa16.77■□□□□ 0.28
LRRK1-202ENST00000525284 PKNOX2Q96KN3 472 aa16.77■□□□□ 0.28
LRRK1-202ENST00000525284 TSPYL1Q9H0U9 437 aa16.77■□□□□ 0.28
LRRK1-202ENST00000525284 RILPL2Q969X0 211 aa16.77■□□□□ 0.28
LRRK1-202ENST00000525284 PAK3O75914 559 aaPredicted RBP16.77■□□□□ 0.27
LRRK1-202ENST00000525284 FAM43AQ8N2R8 423 aa16.76■□□□□ 0.27
LRRK1-202ENST00000525284 STK11IPQ8N1F8 1099 aa16.76■□□□□ 0.27
LRRK1-202ENST00000525284 HSP90AB2PQ58FF8 381 aa16.76■□□□□ 0.27
LRRK1-202ENST00000525284 CLIP1P30622 1438 aa16.76■□□□□ 0.27
LRRK1-202ENST00000525284 PLEKHD1A6NEE1 506 aa16.75■□□□□ 0.27
LRRK1-202ENST00000525284 PODXL2Q9NZ53 605 aa16.75■□□□□ 0.27
LRRK1-202ENST00000525284 DCAF11Q8TEB1 546 aa16.75■□□□□ 0.27
LRRK1-202ENST00000525284 CCDC47Q96A33 483 aaKnown RBP16.75■□□□□ 0.27
LRRK1-202ENST00000525284 ZFYVE27Q5T4F4 411 aa16.75■□□□□ 0.27
LRRK1-202ENST00000525284 CHMP7Q8WUX9 453 aaPredicted RBP16.74■□□□□ 0.27
LRRK1-202ENST00000525284 R3HCC1Q9Y3T6 440 aaKnown RBP16.73■□□□□ 0.27
LRRK1-202ENST00000525284 MLECQ14165 292 aa16.73■□□□□ 0.27
LRRK1-202ENST00000525284 CAGE1Q8TC20 777 aa16.73■□□□□ 0.27
LRRK1-202ENST00000525284 SYNE3Q6ZMZ3 975 aa16.72■□□□□ 0.27
LRRK1-202ENST00000525284 BICD2Q8TD16 824 aa16.72■□□□□ 0.27
LRRK1-202ENST00000525284 CCDC66A2RUB6 948 aa16.72■□□□□ 0.27
LRRK1-202ENST00000525284 TRIM29Q14134 588 aa16.71■□□□□ 0.27
LRRK1-202ENST00000525284 CFDP1Q9UEE9 299 aaPredicted RBP16.71■□□□□ 0.27
LRRK1-202ENST00000525284 TTLL5Q6EMB2 1281 aa16.71■□□□□ 0.27
LRRK1-202ENST00000525284 KTN1Q86UP2 1357 aaKnown RBP16.7■□□□□ 0.26
LRRK1-202ENST00000525284 SPAG9O60271 1321 aaKnown RBP16.7■□□□□ 0.26
LRRK1-202ENST00000525284 MEX3CQ5U5Q3 659 aaKnown RBP16.7■□□□□ 0.26
LRRK1-202ENST00000525284 STK26Q9P289 416 aa16.7■□□□□ 0.26
LRRK1-202ENST00000525284 HDAC5Q9UQL6 1122 aa16.7■□□□□ 0.26
LRRK1-202ENST00000525284 CCER2I3L3R5 266 aa16.69■□□□□ 0.26
LRRK1-202ENST00000525284 CTDP1Q9Y5B0 961 aaPredicted RBP16.69■□□□□ 0.26
LRRK1-202ENST00000525284 HDGFL2Q7Z4V5 671 aaPredicted RBP16.69■□□□□ 0.26
LRRK1-202ENST00000525284 GTF2E1P29083 439 aaPredicted RBP16.69■□□□□ 0.26
LRRK1-202ENST00000525284 CCDC173Q0VFZ6 552 aa16.69■□□□□ 0.26
LRRK1-202ENST00000525284 MAPK8IP2Q13387 824 aaPredicted RBP16.68■□□□□ 0.26
LRRK1-202ENST00000525284 HOOK1Q9UJC3 728 aaKnown RBP16.68■□□□□ 0.26
LRRK1-202ENST00000525284 SASS6Q6UVJ0 657 aa16.67■□□□□ 0.26
LRRK1-202ENST00000525284 LEKR1Q6ZMV7 388 aa16.67■□□□□ 0.26
LRRK1-202ENST00000525284 DHX16O60231 1041 aaKnown RBP16.67■□□□□ 0.26
LRRK1-202ENST00000525284 PDILTQ8N807 584 aa16.67■□□□□ 0.26
LRRK1-202ENST00000525284 AXDND1Q5T1B0 1012 aaPredicted RBP16.67■□□□□ 0.26
LRRK1-202ENST00000525284 GOLGA3Q08378 1498 aa16.66■□□□□ 0.26
LRRK1-202ENST00000525284 KLHL34Q8N239 644 aa16.66■□□□□ 0.26
LRRK1-202ENST00000525284 ERCC4Q92889 916 aaPredicted RBP16.66■□□□□ 0.26
LRRK1-202ENST00000525284 MSH5O43196 834 aa16.66■□□□□ 0.26
LRRK1-202ENST00000525284 NEFHP12036 1026 aa16.66■□□□□ 0.26
LRRK1-202ENST00000525284 ANKRD62A6NC57 917 aa16.66■□□□□ 0.26
LRRK1-202ENST00000525284 FOSBP53539 338 aa16.66■□□□□ 0.26
LRRK1-202ENST00000525284 CHMP4CQ96CF2 233 aa16.65■□□□□ 0.26
LRRK1-202ENST00000525284 RB1CC1Q8TDY2 1594 aa16.65■□□□□ 0.26
LRRK1-202ENST00000525284 CCDC43Q96MW1 224 aaKnown RBP16.65■□□□□ 0.26
LRRK1-202ENST00000525284 NEXNQ0ZGT2 675 aa16.65■□□□□ 0.26
LRRK1-202ENST00000525284 CCDC146Q8IYE0 955 aa16.65■□□□□ 0.26
LRRK1-202ENST00000525284 DIAPH3Q9NSV4 1193 aa16.64■□□□□ 0.26
LRRK1-202ENST00000525284 OFD1O75665 1012 aa16.64■□□□□ 0.25
LRRK1-202ENST00000525284 ZRSR2Q15696 482 aaKnown RBP16.64■□□□□ 0.25
LRRK1-202ENST00000525284 ANKRD45Q5TZF3 282 aa16.64■□□□□ 0.25
LRRK1-202ENST00000525284 CPLX2Q6PUV4 134 aaKnown RBP16.64■□□□□ 0.25
LRRK1-202ENST00000525284 DYDC1Q8WWB3 177 aa16.64■□□□□ 0.25
LRRK1-202ENST00000525284 TRIM34Q9BYJ4 488 aa16.63■□□□□ 0.25
LRRK1-202ENST00000525284 CHMP4AQ9BY43 222 aa16.63■□□□□ 0.25
LRRK1-202ENST00000525284 CPLX1O14810 134 aa16.63■□□□□ 0.25
LRRK1-202ENST00000525284 CENPJQ9HC77 1338 aaPredicted RBP16.63■□□□□ 0.25
LRRK1-202ENST00000525284 PAF1Q8N7H5 531 aa16.62■□□□□ 0.25
LRRK1-202ENST00000525284 ANO2Q9NQ90 1003 aa16.62■□□□□ 0.25
LRRK1-202ENST00000525284 EPS15P42566 896 aa16.62■□□□□ 0.25
LRRK1-202ENST00000525284 MYO6Q9UM54 1294 aa16.62■□□□□ 0.25
LRRK1-202ENST00000525284 HSPA5P11021 654 aaKnown RBP16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms