RNA–Protein interactions for RNA: ENST00000524023.1

HDAC9-228, Transcript of histone deacetylase 9, humanhuman

TSL 2 BASIC

Gene HDAC9, Length 2,199 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-228ENST00000524023 E9PCH4 1651 aa15.05■□□□□ -0
HDAC9-228ENST00000524023 TTC37Q6PGP7 1564 aa15.04■□□□□ -0
HDAC9-228ENST00000524023 PNISRQ8TF01 805 aaKnown RBP15.04■□□□□ -0
HDAC9-228ENST00000524023 UNC13BO14795 1591 aa15.04■□□□□ -0
HDAC9-228ENST00000524023 SHROOM2Q13796 1616 aa15.03■□□□□ -0
HDAC9-228ENST00000524023 TRPM1Q7Z4N2 1603 aa15.03■□□□□ -0
HDAC9-228ENST00000524023 NUDCQ9Y266 331 aa15.03■□□□□ -0
HDAC9-228ENST00000524023 ARHGAP5Q13017 1502 aa15.03■□□□□ -0
HDAC9-228ENST00000524023 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP15.03■□□□□ -0
HDAC9-228ENST00000524023 CCDC144AA2RUR9 1427 aa15.02■□□□□ -0
HDAC9-228ENST00000524023 PRAG1Q86YV5 1406 aa15.02■□□□□ -0
HDAC9-228ENST00000524023 KTN1Q86UP2 1357 aaKnown RBP15.02□□□□□ -0.01
HDAC9-228ENST00000524023 B4GALNT3Q6L9W6 998 aa15.02□□□□□ -0.01
HDAC9-228ENST00000524023 TMC1Q8TDI8 760 aa15.02□□□□□ -0.01
HDAC9-228ENST00000524023 FANCIQ9NVI1 1328 aa15.01□□□□□ -0.01
HDAC9-228ENST00000524023 PLXNC1O60486 1568 aa15□□□□□ -0.01
HDAC9-228ENST00000524023 MYO5CQ9NQX4 1742 aa15□□□□□ -0.01
HDAC9-228ENST00000524023 PLA2R1Q13018 1463 aa15□□□□□ -0.01
HDAC9-228ENST00000524023 BRD4O60885 1362 aaPredicted RBP15□□□□□ -0.01
HDAC9-228ENST00000524023 RALBP1Q15311 655 aa15□□□□□ -0.01
HDAC9-228ENST00000524023 RNF123Q5XPI4 1314 aa14.99□□□□□ -0.01
HDAC9-228ENST00000524023 MYBBP1AQ9BQG0 1328 aaKnown RBP14.99□□□□□ -0.01
HDAC9-228ENST00000524023 IQGAP3Q86VI3 1631 aa14.99□□□□□ -0.01
HDAC9-228ENST00000524023 LRPPRCP42704 1394 aaKnown RBP14.99□□□□□ -0.01
HDAC9-228ENST00000524023 MSH5O43196 834 aa14.98□□□□□ -0.01
HDAC9-228ENST00000524023 ABCC2Q92887 1545 aa14.98□□□□□ -0.01
HDAC9-228ENST00000524023 PLEKHH2Q8IVE3 1493 aa14.98□□□□□ -0.01
HDAC9-228ENST00000524023 GPRASP1Q5JY77 1395 aa14.97□□□□□ -0.01
HDAC9-228ENST00000524023 A2MP01023 1474 aa14.97□□□□□ -0.01
HDAC9-228ENST00000524023 RGL3Q3MIN7 710 aa14.96□□□□□ -0.01
HDAC9-228ENST00000524023 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.96□□□□□ -0.01
HDAC9-228ENST00000524023 ERCC6L2Q5T890 1561 aa14.96□□□□□ -0.01
HDAC9-228ENST00000524023 LAMC1P11047 1609 aa14.96□□□□□ -0.01
HDAC9-228ENST00000524023 NBPF1Q3BBV0 1214 aa14.95□□□□□ -0.02
HDAC9-228ENST00000524023 DUOX2Q9NRD8 1548 aa14.95□□□□□ -0.02
HDAC9-228ENST00000524023 PRDM15P57071 1507 aaPredicted RBP14.93□□□□□ -0.02
HDAC9-228ENST00000524023 MAGI2Q86UL8 1455 aa14.93□□□□□ -0.02
HDAC9-228ENST00000524023 SENP3-EIF4A1A0A087X0R7 540 aa14.93□□□□□ -0.02
HDAC9-228ENST00000524023 ATP10AO60312 1499 aa14.93□□□□□ -0.02
HDAC9-228ENST00000524023 PARD3Q8TEW0 1356 aa14.93□□□□□ -0.02
HDAC9-228ENST00000524023 EIF2AK4Q9P2K8 1649 aaKnown RBP14.92□□□□□ -0.02
HDAC9-228ENST00000524023 COL17A1Q9UMD9 1497 aaPredicted RBP14.92□□□□□ -0.02
HDAC9-228ENST00000524023 ERBINQ96RT1 1412 aa14.92□□□□□ -0.02
HDAC9-228ENST00000524023 PER1O15534 1290 aaPredicted RBP14.91□□□□□ -0.02
HDAC9-228ENST00000524023 NLRP13Q86W25 1043 aa14.91□□□□□ -0.02
HDAC9-228ENST00000524023 PLCH2O75038 1416 aa14.9□□□□□ -0.02
HDAC9-228ENST00000524023 TESK2Q96S53 571 aa14.9□□□□□ -0.02
HDAC9-228ENST00000524023 ZCCHC11Q5TAX3 1644 aaKnown RBP14.89□□□□□ -0.03
HDAC9-228ENST00000524023 DISP3Q9P2K9 1392 aa14.88□□□□□ -0.03
HDAC9-228ENST00000524023 CCDC136Q96JN2 1154 aa14.87□□□□□ -0.03
HDAC9-228ENST00000524023 ABCC1P33527 1531 aa14.87□□□□□ -0.03
HDAC9-228ENST00000524023 WASHC2CQ9Y4E1 1318 aa14.87□□□□□ -0.03
HDAC9-228ENST00000524023 EFCAB2Q5VUJ9 269 aa14.87□□□□□ -0.03
HDAC9-228ENST00000524023 RNF17Q9BXT8 1623 aaKnown RBP14.86□□□□□ -0.03
HDAC9-228ENST00000524023 UHRF1BP1LA0JNW5 1464 aa14.85□□□□□ -0.03
HDAC9-228ENST00000524023 TRAPPC8Q9Y2L5 1435 aa14.84□□□□□ -0.03
HDAC9-228ENST00000524023 TMF1P82094 1093 aa14.84□□□□□ -0.03
HDAC9-228ENST00000524023 PANK3Q9H999 370 aa14.83□□□□□ -0.04
HDAC9-228ENST00000524023 PDE3BQ13370 1112 aa14.83□□□□□ -0.04
HDAC9-228ENST00000524023 CLASP1Q7Z460 1538 aa14.82□□□□□ -0.04
HDAC9-228ENST00000524023 RRP1P56182 461 aaKnown RBP14.82□□□□□ -0.04
HDAC9-228ENST00000524023 ERICH6Q7L0X2 663 aa14.82□□□□□ -0.04
HDAC9-228ENST00000524023 CC2D1BQ5T0F9 858 aaKnown RBP14.81□□□□□ -0.04
HDAC9-228ENST00000524023 INSRP06213 1382 aa14.81□□□□□ -0.04
HDAC9-228ENST00000524023 MADDQ8WXG6 1647 aa14.81□□□□□ -0.04
HDAC9-228ENST00000524023 SALL2Q9Y467 1007 aaPredicted RBP14.8□□□□□ -0.04
HDAC9-228ENST00000524023 ZMYM4Q5VZL5 1548 aa14.8□□□□□ -0.04
HDAC9-228ENST00000524023 RTEL1-TNFRSF6BF6WH68 1400 aa14.8□□□□□ -0.04
HDAC9-228ENST00000524023 RCAN3Q9UKA8 241 aa14.8□□□□□ -0.04
HDAC9-228ENST00000524023 SPAG9O60271 1321 aaKnown RBP14.79□□□□□ -0.04
HDAC9-228ENST00000524023 IQGAP1P46940 1657 aa14.79□□□□□ -0.04
HDAC9-228ENST00000524023 TRPM2O94759 1503 aa14.79□□□□□ -0.04
HDAC9-228ENST00000524023 ARAP3Q8WWN8 1544 aa14.79□□□□□ -0.04
HDAC9-228ENST00000524023 BLMP54132 1417 aaPredicted RBP14.79□□□□□ -0.04
HDAC9-228ENST00000524023 CEP152O94986 1710 aa14.78□□□□□ -0.04
HDAC9-228ENST00000524023 ZFYVE16Q7Z3T8 1539 aa14.78□□□□□ -0.04
HDAC9-228ENST00000524023 SPHKAPQ2M3C7 1700 aa14.78□□□□□ -0.04
HDAC9-228ENST00000524023 DEPDC5O75140 1603 aa14.77□□□□□ -0.05
HDAC9-228ENST00000524023 PTPRTO14522 1441 aa14.76□□□□□ -0.05
HDAC9-228ENST00000524023 WDR7Q9Y4E6 1490 aa14.76□□□□□ -0.05
HDAC9-228ENST00000524023 AFAP1Q8N556 730 aa14.76□□□□□ -0.05
HDAC9-228ENST00000524023 EXOC6Q8TAG9 804 aa14.75□□□□□ -0.05
HDAC9-228ENST00000524023 CLTCL1P53675 1640 aa14.75□□□□□ -0.05
HDAC9-228ENST00000524023 CDCA7LQ96GN5 454 aa14.75□□□□□ -0.05
HDAC9-228ENST00000524023 STAC3Q96MF2 364 aa14.74□□□□□ -0.05
HDAC9-228ENST00000524023 TET3O43151 1660 aa14.74□□□□□ -0.05
HDAC9-228ENST00000524023 SCAPERQ9BY12 1400 aa14.73□□□□□ -0.05
HDAC9-228ENST00000524023 SCAF11Q99590 1463 aaKnown RBP14.73□□□□□ -0.05
HDAC9-228ENST00000524023 SYNMO15061 1565 aa14.72□□□□□ -0.05
HDAC9-228ENST00000524023 VWDEQ8N2E2 1590 aa14.71□□□□□ -0.05
HDAC9-228ENST00000524023 INO80Q9ULG1 1556 aaPredicted RBP14.71□□□□□ -0.05
HDAC9-228ENST00000524023 ATP7AQ04656 1500 aa14.71□□□□□ -0.05
HDAC9-228ENST00000524023 KNSTRNQ9Y448 316 aa14.71□□□□□ -0.05
HDAC9-228ENST00000524023 ABCA9Q8IUA7 1624 aa14.7□□□□□ -0.06
HDAC9-228ENST00000524023 CDCA8Q53HL2 280 aa14.7□□□□□ -0.06
HDAC9-228ENST00000524023 NOP58Q9Y2X3 529 aaKnown RBP14.7□□□□□ -0.06
HDAC9-228ENST00000524023 KANK1Q14678 1352 aa14.69□□□□□ -0.06
HDAC9-228ENST00000524023 KIAA1210Q9ULL0 1709 aa14.69□□□□□ -0.06
HDAC9-228ENST00000524023 AMER1Q5JTC6 1135 aaPredicted RBP14.69□□□□□ -0.06
HDAC9-228ENST00000524023 ADAMTS8Q9UP79 889 aa14.69□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms