RNA–Protein interactions for RNA: ENST00000521559.1

VPS13B-209, Transcript of vacuolar protein sorting 13 homolog B, humanhuman

TSL 3

Gene VPS13B, Length 466 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13B-209ENST00000521559 ADGRD1Q6QNK2 874 aa8.17□□□□□ -1.1
VPS13B-209ENST00000521559 STAC3Q96MF2 364 aa8.17□□□□□ -1.1
VPS13B-209ENST00000521559 SLC4A5Q9BY07 1137 aa8.17□□□□□ -1.1
VPS13B-209ENST00000521559 DMRTA1Q5VZB9 504 aa8.16□□□□□ -1.1
VPS13B-209ENST00000521559 GRXCR2A6NFK2 248 aa8.15□□□□□ -1.1
VPS13B-209ENST00000521559 PPP1R3GB7ZBB8 358 aa8.15□□□□□ -1.1
VPS13B-209ENST00000521559 MYT1LQ9UL68 1186 aa8.15□□□□□ -1.1
VPS13B-209ENST00000521559 MAP3K7O43318 606 aa8.14□□□□□ -1.11
VPS13B-209ENST00000521559 C6orf132Q5T0Z8 1188 aa8.14□□□□□ -1.11
VPS13B-209ENST00000521559 RBM33Q96EV2 1170 aaKnown RBP8.14□□□□□ -1.11
VPS13B-209ENST00000521559 EN1Q05925 392 aaPredicted RBP8.13□□□□□ -1.11
VPS13B-209ENST00000521559 RNF166Q96A37 237 aaPredicted RBP8.12□□□□□ -1.11
VPS13B-209ENST00000521559 ZBED2Q9BTP6 218 aa8.12□□□□□ -1.11
VPS13B-209ENST00000521559 VPS9D1Q9Y2B5 631 aa8.12□□□□□ -1.11
VPS13B-209ENST00000521559 CERKQ8TCT0 537 aa8.11□□□□□ -1.11
VPS13B-209ENST00000521559 KDM2AQ9Y2K7 1162 aa8.11□□□□□ -1.11
VPS13B-209ENST00000521559 HRO43593 1189 aa8.1□□□□□ -1.11
VPS13B-209ENST00000521559 ONECUT3O60422 494 aaPredicted RBP8.1□□□□□ -1.11
VPS13B-209ENST00000521559 NBPF3Q9H094 633 aa8.1□□□□□ -1.11
VPS13B-209ENST00000521559 OSBPP22059 807 aa8.08□□□□□ -1.12
VPS13B-209ENST00000521559 SMYD5Q6GMV2 418 aa8.08□□□□□ -1.12
VPS13B-209ENST00000521559 COL9A1P20849 921 aa8.07□□□□□ -1.12
VPS13B-209ENST00000521559 RABGEF1Q9UJ41 708 aa8.07□□□□□ -1.12
VPS13B-209ENST00000521559 GOLGA8CPA6NN73 597 aa8.06□□□□□ -1.12
VPS13B-209ENST00000521559 TSR1Q2NL82 804 aaKnown RBP8.06□□□□□ -1.12
VPS13B-209ENST00000521559 MRPL50Q8N5N7 158 aaKnown RBP8.06□□□□□ -1.12
VPS13B-209ENST00000521559 BHMG1C9JSJ3 638 aaPredicted RBP8.05□□□□□ -1.12
VPS13B-209ENST00000521559 MLLT3P42568 568 aaPredicted RBP8.05□□□□□ -1.12
VPS13B-209ENST00000521559 TRIM6-TRIM34B2RNG4 842 aa8.04□□□□□ -1.12
VPS13B-209ENST00000521559 SEMA3EO15041 775 aa8.04□□□□□ -1.12
VPS13B-209ENST00000521559 PROX2Q3B8N5 592 aa8.04□□□□□ -1.12
VPS13B-209ENST00000521559 PACS2Q86VP3 889 aa8.04□□□□□ -1.12
VPS13B-209ENST00000521559 LAPTM4BQ86VI4 370 aa8.03□□□□□ -1.12
VPS13B-209ENST00000521559 KIAA1468Q9P260 1216 aa8.03□□□□□ -1.12
VPS13B-209ENST00000521559 PRSS12P56730 875 aa8.02□□□□□ -1.13
VPS13B-209ENST00000521559 RBM27Q9P2N5 1060 aaKnown RBP8.02□□□□□ -1.13
VPS13B-209ENST00000521559 TESPA1A2RU30 521 aaPredicted RBP8.01□□□□□ -1.13
VPS13B-209ENST00000521559 TULP1O00294 542 aaPredicted RBP8.01□□□□□ -1.13
VPS13B-209ENST00000521559 PRIM1P49642 420 aaKnown RBP8.01□□□□□ -1.13
VPS13B-209ENST00000521559 CDCA7LQ96GN5 454 aa8.01□□□□□ -1.13
VPS13B-209ENST00000521559 HCSTQ9UBK5 93 aa8.01□□□□□ -1.13
VPS13B-209ENST00000521559 KCTD12Q96CX2 325 aaKnown RBP8□□□□□ -1.13
VPS13B-209ENST00000521559 NUTM2FA1L443 756 aa7.98□□□□□ -1.13
VPS13B-209ENST00000521559 NBPF26B4DH59 902 aa7.98□□□□□ -1.13
VPS13B-209ENST00000521559 ANKK1Q8NFD2 765 aa7.98□□□□□ -1.13
VPS13B-209ENST00000521559 WNT2BQ93097 391 aa7.98□□□□□ -1.13
VPS13B-209ENST00000521559 CDHR5Q9HBB8 845 aa7.98□□□□□ -1.13
VPS13B-209ENST00000521559 FAM98CQ17RN3 349 aaKnown RBP7.97□□□□□ -1.13
VPS13B-209ENST00000521559 TSKSQ9UJT2 592 aa7.97□□□□□ -1.13
VPS13B-209ENST00000521559 FCHSD2O94868 740 aa7.96□□□□□ -1.14
VPS13B-209ENST00000521559 NPDC1Q9NQX5 325 aaPredicted RBP7.96□□□□□ -1.14
VPS13B-209ENST00000521559 PTGDRQ13258 359 aa7.95□□□□□ -1.14
VPS13B-209ENST00000521559 ZFRQ96KR1 1074 aaKnown RBP7.95□□□□□ -1.14
VPS13B-209ENST00000521559 SEPT9Q9UHD8 586 aaPredicted RBP7.95□□□□□ -1.14
VPS13B-209ENST00000521559 HDGFP51858 240 aaKnown RBP7.94□□□□□ -1.14
VPS13B-209ENST00000521559 THSD4Q6ZMP0 1018 aa7.94□□□□□ -1.14
VPS13B-209ENST00000521559 TATDN2Q93075 761 aa7.94□□□□□ -1.14
VPS13B-209ENST00000521559 PNMA3Q9UL41 463 aa7.94□□□□□ -1.14
VPS13B-209ENST00000521559 PADI6Q6TGC4 694 aa7.93□□□□□ -1.14
VPS13B-209ENST00000521559 TTC13Q8NBP0 860 aa7.93□□□□□ -1.14
VPS13B-209ENST00000521559 PTPN5P54829 565 aa7.92□□□□□ -1.14
VPS13B-209ENST00000521559 SOWAHBA6NEL2 793 aa7.91□□□□□ -1.14
VPS13B-209ENST00000521559 HIC1Q14526 733 aa7.91□□□□□ -1.14
VPS13B-209ENST00000521559 RBM26Q5T8P6 1007 aaKnown RBP7.91□□□□□ -1.14
VPS13B-209ENST00000521559 NUDT18Q6ZVK8 323 aa7.91□□□□□ -1.14
VPS13B-209ENST00000521559 LRCH3Q96II8 777 aa7.91□□□□□ -1.14
VPS13B-209ENST00000521559 FAM198AQ9UFP1 575 aa7.91□□□□□ -1.14
VPS13B-209ENST00000521559 SLC4A3P48751 1232 aa7.9□□□□□ -1.14
VPS13B-209ENST00000521559 NYAP1Q6ZVC0 841 aa7.9□□□□□ -1.14
VPS13B-209ENST00000521559 CDKN2AIPQ9NXV6 580 aaPredicted RBP7.9□□□□□ -1.14
VPS13B-209ENST00000521559 SMAPO00193 183 aa7.89□□□□□ -1.15
VPS13B-209ENST00000521559 RBM46Q8TBY0 533 aaKnown RBP7.89□□□□□ -1.15
VPS13B-209ENST00000521559 GPIHBP1Q8IV16 184 aa7.88□□□□□ -1.15
VPS13B-209ENST00000521559 NECTIN2Q92692 538 aa7.88□□□□□ -1.15
VPS13B-209ENST00000521559 GNPATO15228 680 aa7.87□□□□□ -1.15
VPS13B-209ENST00000521559 BCAMP50895 628 aa7.87□□□□□ -1.15
VPS13B-209ENST00000521559 TSR3Q9UJK0 312 aaKnown RBP7.87□□□□□ -1.15
VPS13B-209ENST00000521559 OATP04181 439 aa7.86□□□□□ -1.15
VPS13B-209ENST00000521559 PPP4CP60510 307 aa7.85□□□□□ -1.15
VPS13B-209ENST00000521559 SAMD7Q7Z3H4 446 aa7.85□□□□□ -1.15
VPS13B-209ENST00000521559 EYA1Q99502 592 aa7.85□□□□□ -1.15
VPS13B-209ENST00000521559 SLC24A1O60721 1099 aa7.84□□□□□ -1.15
VPS13B-209ENST00000521559 DNAJB2P25686 324 aa7.84□□□□□ -1.15
VPS13B-209ENST00000521559 SLF2Q8IX21 1173 aa7.84□□□□□ -1.15
VPS13B-209ENST00000521559 HPS5Q9UPZ3 1129 aa7.84□□□□□ -1.15
VPS13B-209ENST00000521559 ADGRG1Q9Y653 693 aa7.84□□□□□ -1.15
VPS13B-209ENST00000521559 C3orf80F5H4A9 247 aa7.83□□□□□ -1.16
VPS13B-209ENST00000521559 PLA2G2EQ9NZK7 142 aa7.83□□□□□ -1.16
VPS13B-209ENST00000521559 WBP1LQ9NX94 342 aa7.82□□□□□ -1.16
VPS13B-209ENST00000521559 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP7.81□□□□□ -1.16
VPS13B-209ENST00000521559 DHX30Q7L2E3 1194 aaKnown RBP eCLIP7.81□□□□□ -1.16
VPS13B-209ENST00000521559 GPR37O15354 613 aa7.8□□□□□ -1.16
VPS13B-209ENST00000521559 RNF40O75150 1001 aa7.8□□□□□ -1.16
VPS13B-209ENST00000521559 SWT1Q5T5J6 900 aaKnown RBP7.8□□□□□ -1.16
VPS13B-209ENST00000521559 RCCD1A6NED2 376 aa7.79□□□□□ -1.16
VPS13B-209ENST00000521559 TMEM134Q9H6X4 195 aa7.79□□□□□ -1.16
VPS13B-209ENST00000521559 RSPH4AQ5TD94 716 aa7.78□□□□□ -1.16
VPS13B-209ENST00000521559 LMOD2Q6P5Q4 547 aa7.78□□□□□ -1.16
VPS13B-209ENST00000521559 PXYLP1Q8TE99 480 aa7.78□□□□□ -1.16
VPS13B-209ENST00000521559 PRR14Q9BWN1 585 aa7.78□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms