RNA–Protein interactions for RNA: ENST00000515460.5

NUP54-218, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 849 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-218ENST00000515460 FBXW7Q969H0 707 aa11.66□□□□□ -0.54
NUP54-218ENST00000515460 BHMG1C9JSJ3 638 aaPredicted RBP11.65□□□□□ -0.54
NUP54-218ENST00000515460 COL9A1P20849 921 aa11.65□□□□□ -0.54
NUP54-218ENST00000515460 MRPL50Q8N5N7 158 aaKnown RBP11.65□□□□□ -0.54
NUP54-218ENST00000515460 WDR70Q9NW82 654 aa11.65□□□□□ -0.54
NUP54-218ENST00000515460 PROX2Q3B8N5 592 aa11.64□□□□□ -0.55
NUP54-218ENST00000515460 RBM33Q96EV2 1170 aaKnown RBP11.64□□□□□ -0.55
NUP54-218ENST00000515460 PLA2G2EQ9NZK7 142 aa11.64□□□□□ -0.55
NUP54-218ENST00000515460 PPP1R3GB7ZBB8 358 aa11.63□□□□□ -0.55
NUP54-218ENST00000515460 EPAS1Q99814 870 aa11.62□□□□□ -0.55
NUP54-218ENST00000515460 E2F4Q16254 413 aa11.61□□□□□ -0.55
NUP54-218ENST00000515460 C6orf132Q5T0Z8 1188 aa11.61□□□□□ -0.55
NUP54-218ENST00000515460 WNT2BQ93097 391 aa11.6□□□□□ -0.55
NUP54-218ENST00000515460 NBPF3Q9H094 633 aa11.6□□□□□ -0.55
NUP54-218ENST00000515460 NBR1Q14596 966 aa11.57□□□□□ -0.56
NUP54-218ENST00000515460 RABGEF1Q9UJ41 708 aa11.57□□□□□ -0.56
NUP54-218ENST00000515460 PDIA6Q15084 440 aa11.56□□□□□ -0.56
NUP54-218ENST00000515460 THSD4Q6ZMP0 1018 aa11.56□□□□□ -0.56
NUP54-218ENST00000515460 KIAA1468Q9P260 1216 aa11.56□□□□□ -0.56
NUP54-218ENST00000515460 SPDYE16A6NNV3 312 aaPredicted RBP11.54□□□□□ -0.56
NUP54-218ENST00000515460 MAP3K7O43318 606 aa11.54□□□□□ -0.56
NUP54-218ENST00000515460 GRXCR2A6NFK2 248 aa11.53□□□□□ -0.56
NUP54-218ENST00000515460 TSR1Q2NL82 804 aaKnown RBP11.52□□□□□ -0.57
NUP54-218ENST00000515460 EN1Q05925 392 aaPredicted RBP11.5□□□□□ -0.57
NUP54-218ENST00000515460 TSHZ2Q9NRE2 1034 aa11.5□□□□□ -0.57
NUP54-218ENST00000515460 SEPT9Q9UHD8 586 aaPredicted RBP11.5□□□□□ -0.57
NUP54-218ENST00000515460 ANKK1Q8NFD2 765 aa11.49□□□□□ -0.57
NUP54-218ENST00000515460 TRIM6-TRIM34B2RNG4 842 aa11.48□□□□□ -0.57
NUP54-218ENST00000515460 BCAMP50895 628 aa11.46□□□□□ -0.57
NUP54-218ENST00000515460 LAPTM4BQ86VI4 370 aa11.46□□□□□ -0.57
NUP54-218ENST00000515460 ARIH1Q9Y4X5 557 aaPredicted RBP11.46□□□□□ -0.57
NUP54-218ENST00000515460 ONECUT3O60422 494 aaPredicted RBP11.45□□□□□ -0.58
NUP54-218ENST00000515460 PRIM1P49642 420 aaKnown RBP11.45□□□□□ -0.58
NUP54-218ENST00000515460 ZFRQ96KR1 1074 aaKnown RBP11.45□□□□□ -0.58
NUP54-218ENST00000515460 PACS2Q86VP3 889 aa11.42□□□□□ -0.58
NUP54-218ENST00000515460 TSKSQ9UJT2 592 aa11.42□□□□□ -0.58
NUP54-218ENST00000515460 SOWAHBA6NEL2 793 aa11.41□□□□□ -0.58
NUP54-218ENST00000515460 OSBPP22059 807 aa11.4□□□□□ -0.58
NUP54-218ENST00000515460 FAM98CQ17RN3 349 aaKnown RBP11.4□□□□□ -0.58
NUP54-218ENST00000515460 CDCA7LQ96GN5 454 aa11.4□□□□□ -0.58
NUP54-218ENST00000515460 SMAPO00193 183 aa11.38□□□□□ -0.59
NUP54-218ENST00000515460 PRSS12P56730 875 aa11.38□□□□□ -0.59
NUP54-218ENST00000515460 CDHR5Q9HBB8 845 aa11.38□□□□□ -0.59
NUP54-218ENST00000515460 WBP1LQ9NX94 342 aa11.37□□□□□ -0.59
NUP54-218ENST00000515460 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.36□□□□□ -0.59
NUP54-218ENST00000515460 CERKQ8TCT0 537 aa11.35□□□□□ -0.59
NUP54-218ENST00000515460 LRCH3Q96II8 777 aa11.35□□□□□ -0.59
NUP54-218ENST00000515460 FAM198AQ9UFP1 575 aa11.35□□□□□ -0.59
NUP54-218ENST00000515460 PLCB2Q00722 1185 aa11.33□□□□□ -0.6
NUP54-218ENST00000515460 KCNV2Q8TDN2 545 aa11.33□□□□□ -0.6
NUP54-218ENST00000515460 HPS5Q9UPZ3 1129 aa11.33□□□□□ -0.6
NUP54-218ENST00000515460 C3orf80F5H4A9 247 aa11.32□□□□□ -0.6
NUP54-218ENST00000515460 ARHGEF1Q92888 912 aaKnown RBP11.32□□□□□ -0.6
NUP54-218ENST00000515460 PNMA3Q9UL41 463 aa11.32□□□□□ -0.6
NUP54-218ENST00000515460 TATDN2Q93075 761 aa11.31□□□□□ -0.6
NUP54-218ENST00000515460 TSR3Q9UJK0 312 aaKnown RBP11.31□□□□□ -0.6
NUP54-218ENST00000515460 MLLT3P42568 568 aaPredicted RBP11.3□□□□□ -0.6
NUP54-218ENST00000515460 IFFO2Q5TF58 517 aa11.3□□□□□ -0.6
NUP54-218ENST00000515460 NYAP1Q6ZVC0 841 aa11.29□□□□□ -0.6
NUP54-218ENST00000515460 NUDT18Q6ZVK8 323 aa11.29□□□□□ -0.6
NUP54-218ENST00000515460 SAMD7Q7Z3H4 446 aa11.29□□□□□ -0.6
NUP54-218ENST00000515460 NBPF26B4DH59 902 aa11.28□□□□□ -0.6
NUP54-218ENST00000515460 A0A0G2JS52 829 aa11.27□□□□□ -0.61
NUP54-218ENST00000515460 PPP4CP60510 307 aa11.27□□□□□ -0.61
NUP54-218ENST00000515460 NPDC1Q9NQX5 325 aaPredicted RBP11.27□□□□□ -0.61
NUP54-218ENST00000515460 CECR2Q9BXF3 1484 aa11.25□□□□□ -0.61
NUP54-218ENST00000515460 ITGBL1O95965 494 aaPredicted RBP11.25□□□□□ -0.61
NUP54-218ENST00000515460 PADI6Q6TGC4 694 aa11.25□□□□□ -0.61
NUP54-218ENST00000515460 RNF40O75150 1001 aa11.24□□□□□ -0.61
NUP54-218ENST00000515460 HDGFP51858 240 aaKnown RBP11.23□□□□□ -0.61
NUP54-218ENST00000515460 KCNC4Q03721 635 aa11.23□□□□□ -0.61
NUP54-218ENST00000515460 RBM27Q9P2N5 1060 aaKnown RBP11.22□□□□□ -0.61
NUP54-218ENST00000515460 P3H3Q8IVL6 736 aa11.19□□□□□ -0.62
NUP54-218ENST00000515460 TTC13Q8NBP0 860 aa11.19□□□□□ -0.62
NUP54-218ENST00000515460 NUTM2FA1L443 756 aa11.18□□□□□ -0.62
NUP54-218ENST00000515460 SEMA3EO15041 775 aa11.17□□□□□ -0.62
NUP54-218ENST00000515460 RGS20O76081 388 aa11.17□□□□□ -0.62
NUP54-218ENST00000515460 HAP1P54257 671 aaPredicted RBP11.16□□□□□ -0.62
NUP54-218ENST00000515460 PTGDRQ13258 359 aa11.15□□□□□ -0.62
NUP54-218ENST00000515460 SWT1Q5T5J6 900 aaKnown RBP11.15□□□□□ -0.62
NUP54-218ENST00000515460 EYA1Q99502 592 aa11.13□□□□□ -0.63
NUP54-218ENST00000515460 TJAP1Q5JTD0 557 aa11.12□□□□□ -0.63
NUP54-218ENST00000515460 APLP1P51693 650 aa11.11□□□□□ -0.63
NUP54-218ENST00000515460 FAM161AQ3B820 660 aa11.11□□□□□ -0.63
NUP54-218ENST00000515460 MTRQ99707 1265 aa11.11□□□□□ -0.63
NUP54-218ENST00000515460 SLF2Q8IX21 1173 aa11.1□□□□□ -0.63
NUP54-218ENST00000515460 IRX2Q9BZI1 471 aaPredicted RBP11.1□□□□□ -0.63
NUP54-218ENST00000515460 RB1CC1Q8TDY2 1594 aa11.08□□□□□ -0.64
NUP54-218ENST00000515460 SLC4A3P48751 1232 aa11.08□□□□□ -0.64
NUP54-218ENST00000515460 IL21Q9HBE4 155 aa11.08□□□□□ -0.64
NUP54-218ENST00000515460 CC2D2AQ9P2K1 1620 aa11.08□□□□□ -0.64
NUP54-218ENST00000515460 ZNF516Q92618 1163 aa11.07□□□□□ -0.64
NUP54-218ENST00000515460 FCHSD2O94868 740 aa11.06□□□□□ -0.64
NUP54-218ENST00000515460 RBM46Q8TBY0 533 aaKnown RBP11.06□□□□□ -0.64
NUP54-218ENST00000515460 ADGRG1Q9Y653 693 aa11.06□□□□□ -0.64
NUP54-218ENST00000515460 COPS2P61201 443 aa11.05□□□□□ -0.64
NUP54-218ENST00000515460 NECTIN2Q92692 538 aa11.05□□□□□ -0.64
NUP54-218ENST00000515460 CUX2O14529 1486 aa11.05□□□□□ -0.64
NUP54-218ENST00000515460 DNAJB2P25686 324 aa11.04□□□□□ -0.64
NUP54-218ENST00000515460 RBM26Q5T8P6 1007 aaKnown RBP11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms