RNA–Protein interactions for RNA: ENST00000511424.5

LIMCH1-212, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 3

Gene LIMCH1, Length 551 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-212ENST00000511424 EPAS1Q99814 870 aa6.76□□□□□ -1.33
LIMCH1-212ENST00000511424 MAP3K7O43318 606 aa6.75□□□□□ -1.33
LIMCH1-212ENST00000511424 RNF166Q96A37 237 aaPredicted RBP6.75□□□□□ -1.33
LIMCH1-212ENST00000511424 KCNV2Q8TDN2 545 aa6.74□□□□□ -1.33
LIMCH1-212ENST00000511424 ARHGEF1Q92888 912 aaKnown RBP6.74□□□□□ -1.33
LIMCH1-212ENST00000511424 TK2O00142 265 aa6.72□□□□□ -1.33
LIMCH1-212ENST00000511424 GOLGA8CPA6NN73 597 aa6.71□□□□□ -1.34
LIMCH1-212ENST00000511424 C6orf132Q5T0Z8 1188 aa6.71□□□□□ -1.34
LIMCH1-212ENST00000511424 VPS9D1Q9Y2B5 631 aa6.71□□□□□ -1.34
LIMCH1-212ENST00000511424 ARIH1Q9Y4X5 557 aaPredicted RBP6.71□□□□□ -1.34
LIMCH1-212ENST00000511424 PPP1R3GB7ZBB8 358 aa6.7□□□□□ -1.34
LIMCH1-212ENST00000511424 EN1Q05925 392 aaPredicted RBP6.69□□□□□ -1.34
LIMCH1-212ENST00000511424 MRPL50Q8N5N7 158 aaKnown RBP6.69□□□□□ -1.34
LIMCH1-212ENST00000511424 NBPF3Q9H094 633 aa6.69□□□□□ -1.34
LIMCH1-212ENST00000511424 COL9A1P20849 921 aa6.68□□□□□ -1.34
LIMCH1-212ENST00000511424 TSR1Q2NL82 804 aaKnown RBP6.68□□□□□ -1.34
LIMCH1-212ENST00000511424 PROX2Q3B8N5 592 aa6.68□□□□□ -1.34
LIMCH1-212ENST00000511424 ZBED2Q9BTP6 218 aa6.68□□□□□ -1.34
LIMCH1-212ENST00000511424 KCTD12Q96CX2 325 aaKnown RBP6.67□□□□□ -1.34
LIMCH1-212ENST00000511424 VSIG10Q8N0Z9 540 aa6.66□□□□□ -1.34
LIMCH1-212ENST00000511424 SLC4A5Q9BY07 1137 aa6.66□□□□□ -1.34
LIMCH1-212ENST00000511424 KDM2AQ9Y2K7 1162 aa6.66□□□□□ -1.34
LIMCH1-212ENST00000511424 SEMA3EO15041 775 aa6.65□□□□□ -1.34
LIMCH1-212ENST00000511424 HRO43593 1189 aa6.65□□□□□ -1.34
LIMCH1-212ENST00000511424 MLLT3P42568 568 aaPredicted RBP6.65□□□□□ -1.34
LIMCH1-212ENST00000511424 RABGEF1Q9UJ41 708 aa6.65□□□□□ -1.34
LIMCH1-212ENST00000511424 OSBPP22059 807 aa6.64□□□□□ -1.35
LIMCH1-212ENST00000511424 PACS2Q86VP3 889 aa6.64□□□□□ -1.35
LIMCH1-212ENST00000511424 KIAA1468Q9P260 1216 aa6.64□□□□□ -1.35
LIMCH1-212ENST00000511424 PTPN5P54829 565 aa6.63□□□□□ -1.35
LIMCH1-212ENST00000511424 CERKQ8TCT0 537 aa6.63□□□□□ -1.35
LIMCH1-212ENST00000511424 WNT2BQ93097 391 aa6.63□□□□□ -1.35
LIMCH1-212ENST00000511424 NUTM2FA1L443 756 aa6.62□□□□□ -1.35
LIMCH1-212ENST00000511424 TRIM6-TRIM34B2RNG4 842 aa6.62□□□□□ -1.35
LIMCH1-212ENST00000511424 SMYD5Q6GMV2 418 aa6.62□□□□□ -1.35
LIMCH1-212ENST00000511424 CDHR5Q9HBB8 845 aa6.62□□□□□ -1.35
LIMCH1-212ENST00000511424 HCSTQ9UBK5 93 aa6.62□□□□□ -1.35
LIMCH1-212ENST00000511424 SEPT9Q9UHD8 586 aaPredicted RBP6.62□□□□□ -1.35
LIMCH1-212ENST00000511424 BHMG1C9JSJ3 638 aaPredicted RBP6.61□□□□□ -1.35
LIMCH1-212ENST00000511424 PRIM1P49642 420 aaKnown RBP6.61□□□□□ -1.35
LIMCH1-212ENST00000511424 ANKK1Q8NFD2 765 aa6.61□□□□□ -1.35
LIMCH1-212ENST00000511424 CDCA7LQ96GN5 454 aa6.61□□□□□ -1.35
LIMCH1-212ENST00000511424 TULP1O00294 542 aaPredicted RBP6.6□□□□□ -1.35
LIMCH1-212ENST00000511424 PRSS12P56730 875 aa6.6□□□□□ -1.35
LIMCH1-212ENST00000511424 TSKSQ9UJT2 592 aa6.59□□□□□ -1.35
LIMCH1-212ENST00000511424 ONECUT3O60422 494 aaPredicted RBP6.58□□□□□ -1.36
LIMCH1-212ENST00000511424 HDGFP51858 240 aaKnown RBP6.58□□□□□ -1.36
LIMCH1-212ENST00000511424 LAPTM4BQ86VI4 370 aa6.58□□□□□ -1.36
LIMCH1-212ENST00000511424 PNMA3Q9UL41 463 aa6.58□□□□□ -1.36
LIMCH1-212ENST00000511424 NBPF26B4DH59 902 aa6.57□□□□□ -1.36
LIMCH1-212ENST00000511424 SMAPO00193 183 aa6.57□□□□□ -1.36
LIMCH1-212ENST00000511424 RNF40O75150 1001 aa6.57□□□□□ -1.36
LIMCH1-212ENST00000511424 FAM98CQ17RN3 349 aaKnown RBP6.57□□□□□ -1.36
LIMCH1-212ENST00000511424 ZFRQ96KR1 1074 aaKnown RBP6.57□□□□□ -1.36
LIMCH1-212ENST00000511424 PADI6Q6TGC4 694 aa6.56□□□□□ -1.36
LIMCH1-212ENST00000511424 THSD4Q6ZMP0 1018 aa6.56□□□□□ -1.36
LIMCH1-212ENST00000511424 TESPA1A2RU30 521 aaPredicted RBP6.55□□□□□ -1.36
LIMCH1-212ENST00000511424 BCAMP50895 628 aa6.55□□□□□ -1.36
LIMCH1-212ENST00000511424 RBM26Q5T8P6 1007 aaKnown RBP6.55□□□□□ -1.36
LIMCH1-212ENST00000511424 NUDT18Q6ZVK8 323 aa6.55□□□□□ -1.36
LIMCH1-212ENST00000511424 TATDN2Q93075 761 aa6.55□□□□□ -1.36
LIMCH1-212ENST00000511424 LRCH3Q96II8 777 aa6.55□□□□□ -1.36
LIMCH1-212ENST00000511424 FCHSD2O94868 740 aa6.54□□□□□ -1.36
LIMCH1-212ENST00000511424 CDKN2AIPQ9NXV6 580 aaPredicted RBP6.54□□□□□ -1.36
LIMCH1-212ENST00000511424 PTGDRQ13258 359 aa6.53□□□□□ -1.36
LIMCH1-212ENST00000511424 NPDC1Q9NQX5 325 aaPredicted RBP6.53□□□□□ -1.36
LIMCH1-212ENST00000511424 RBM27Q9P2N5 1060 aaKnown RBP6.53□□□□□ -1.36
LIMCH1-212ENST00000511424 SOWAHBA6NEL2 793 aa6.52□□□□□ -1.37
LIMCH1-212ENST00000511424 SLC4A3P48751 1232 aa6.52□□□□□ -1.37
LIMCH1-212ENST00000511424 PLA2G2EQ9NZK7 142 aa6.52□□□□□ -1.37
LIMCH1-212ENST00000511424 FAM198AQ9UFP1 575 aa6.52□□□□□ -1.37
LIMCH1-212ENST00000511424 HPS5Q9UPZ3 1129 aa6.52□□□□□ -1.37
LIMCH1-212ENST00000511424 SAMD7Q7Z3H4 446 aa6.51□□□□□ -1.37
LIMCH1-212ENST00000511424 PPP4CP60510 307 aa6.5□□□□□ -1.37
LIMCH1-212ENST00000511424 GPIHBP1Q8IV16 184 aa6.5□□□□□ -1.37
LIMCH1-212ENST00000511424 RBM46Q8TBY0 533 aaKnown RBP6.49□□□□□ -1.37
LIMCH1-212ENST00000511424 WBP1LQ9NX94 342 aa6.49□□□□□ -1.37
LIMCH1-212ENST00000511424 TSR3Q9UJK0 312 aaKnown RBP6.49□□□□□ -1.37
LIMCH1-212ENST00000511424 C3orf80F5H4A9 247 aa6.48□□□□□ -1.37
LIMCH1-212ENST00000511424 HIC1Q14526 733 aa6.48□□□□□ -1.37
LIMCH1-212ENST00000511424 FAM161AQ3B820 660 aa6.48□□□□□ -1.37
LIMCH1-212ENST00000511424 GNPATO15228 680 aa6.46□□□□□ -1.38
LIMCH1-212ENST00000511424 SWT1Q5T5J6 900 aaKnown RBP6.46□□□□□ -1.38
LIMCH1-212ENST00000511424 NYAP1Q6ZVC0 841 aa6.46□□□□□ -1.38
LIMCH1-212ENST00000511424 TTC13Q8NBP0 860 aa6.46□□□□□ -1.38
LIMCH1-212ENST00000511424 OATP04181 439 aa6.45□□□□□ -1.38
LIMCH1-212ENST00000511424 DNAJB2P25686 324 aa6.45□□□□□ -1.38
LIMCH1-212ENST00000511424 SLF2Q8IX21 1173 aa6.45□□□□□ -1.38
LIMCH1-212ENST00000511424 NECTIN2Q92692 538 aa6.45□□□□□ -1.38
LIMCH1-212ENST00000511424 ADGRG1Q9Y653 693 aa6.45□□□□□ -1.38
LIMCH1-212ENST00000511424 EYA1Q99502 592 aa6.44□□□□□ -1.38
LIMCH1-212ENST00000511424 RCCD1A6NED2 376 aa6.43□□□□□ -1.38
LIMCH1-212ENST00000511424 FECHP22830 423 aa6.42□□□□□ -1.38
LIMCH1-212ENST00000511424 RSPH4AQ5TD94 716 aa6.41□□□□□ -1.38
LIMCH1-212ENST00000511424 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP6.4□□□□□ -1.38
LIMCH1-212ENST00000511424 SLC24A1O60721 1099 aa6.4□□□□□ -1.38
LIMCH1-212ENST00000511424 KCNC4Q03721 635 aa6.4□□□□□ -1.38
LIMCH1-212ENST00000511424 LMOD2Q6P5Q4 547 aa6.4□□□□□ -1.38
LIMCH1-212ENST00000511424 METTL3Q86U44 580 aaKnown RBP6.4□□□□□ -1.38
LIMCH1-212ENST00000511424 PXYLP1Q8TE99 480 aa6.4□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms