RNA–Protein interactions for RNA: ENST00000509552.5

CCHCR1-228, Transcript of coiled-coil alpha-helical rod protein 1, humanhuman

TSL 1 (best)

Gene CCHCR1, Length 2,304 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCHCR1-228ENST00000509552 ABCC2Q92887 1545 aa24.43■■□□□ 1.5
CCHCR1-228ENST00000509552 ST20-MTHFSA0A0A6YYL1 179 aa24.42■■□□□ 1.5
CCHCR1-228ENST00000509552 CNGB1Q14028 1251 aaPredicted RBP24.42■■□□□ 1.5
CCHCR1-228ENST00000509552 RBM19Q9Y4C8 960 aaKnown RBP24.41■■□□□ 1.5
CCHCR1-228ENST00000509552 UNC13BO14795 1591 aa24.41■■□□□ 1.5
CCHCR1-228ENST00000509552 MYO5CQ9NQX4 1742 aa24.4■■□□□ 1.5
CCHCR1-228ENST00000509552 PPP4R2Q9NY27 417 aa24.4■■□□□ 1.5
CCHCR1-228ENST00000509552 PLXNC1O60486 1568 aa24.38■■□□□ 1.49
CCHCR1-228ENST00000509552 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.36■■□□□ 1.49
CCHCR1-228ENST00000509552 PRAG1Q86YV5 1406 aa24.35■■□□□ 1.49
CCHCR1-228ENST00000509552 ERCC6L2Q5T890 1561 aa24.35■■□□□ 1.49
CCHCR1-228ENST00000509552 TMC1Q8TDI8 760 aa24.34■■□□□ 1.49
CCHCR1-228ENST00000509552 KTN1Q86UP2 1357 aaKnown RBP24.34■■□□□ 1.49
CCHCR1-228ENST00000509552 DUOX2Q9NRD8 1548 aa24.33■■□□□ 1.48
CCHCR1-228ENST00000509552 IQGAP3Q86VI3 1631 aa24.32■■□□□ 1.48
CCHCR1-228ENST00000509552 SMG6Q86US8 1419 aaKnown RBP24.32■■□□□ 1.48
CCHCR1-228ENST00000509552 TRPM1Q7Z4N2 1603 aa24.32■■□□□ 1.48
CCHCR1-228ENST00000509552 RGL3Q3MIN7 710 aa24.31■■□□□ 1.48
CCHCR1-228ENST00000509552 RALBP1Q15311 655 aa24.3■■□□□ 1.48
CCHCR1-228ENST00000509552 PLA2R1Q13018 1463 aa24.3■■□□□ 1.48
CCHCR1-228ENST00000509552 PNISRQ8TF01 805 aaKnown RBP24.3■■□□□ 1.48
CCHCR1-228ENST00000509552 PLCH2O75038 1416 aa24.29■■□□□ 1.48
CCHCR1-228ENST00000509552 ERBINQ96RT1 1412 aa24.29■■□□□ 1.48
CCHCR1-228ENST00000509552 EFCAB2Q5VUJ9 269 aa24.28■■□□□ 1.48
CCHCR1-228ENST00000509552 MYBBP1AQ9BQG0 1328 aaKnown RBP24.27■■□□□ 1.48
CCHCR1-228ENST00000509552 NUDCQ9Y266 331 aa24.27■■□□□ 1.48
CCHCR1-228ENST00000509552 ANP32EQ9BTT0 268 aa24.27■■□□□ 1.48
CCHCR1-228ENST00000509552 BRD4O60885 1362 aaPredicted RBP24.27■■□□□ 1.48
CCHCR1-228ENST00000509552 A2MP01023 1474 aa24.27■■□□□ 1.48
CCHCR1-228ENST00000509552 E9PCH4 1651 aa24.27■■□□□ 1.47
CCHCR1-228ENST00000509552 GPRASP1Q5JY77 1395 aa24.26■■□□□ 1.47
CCHCR1-228ENST00000509552 ZCCHC11Q5TAX3 1644 aaKnown RBP24.25■■□□□ 1.47
CCHCR1-228ENST00000509552 UHRF1BP1LA0JNW5 1464 aa24.25■■□□□ 1.47
CCHCR1-228ENST00000509552 MAGI2Q86UL8 1455 aa24.25■■□□□ 1.47
CCHCR1-228ENST00000509552 ATP10AO60312 1499 aa24.24■■□□□ 1.47
CCHCR1-228ENST00000509552 LAMC1P11047 1609 aa24.23■■□□□ 1.47
CCHCR1-228ENST00000509552 NBPF1Q3BBV0 1214 aa24.23■■□□□ 1.47
CCHCR1-228ENST00000509552 EIF2AK4Q9P2K8 1649 aaKnown RBP24.22■■□□□ 1.47
CCHCR1-228ENST00000509552 LRPPRCP42704 1394 aaKnown RBP24.2■■□□□ 1.46
CCHCR1-228ENST00000509552 ABCC1P33527 1531 aa24.2■■□□□ 1.46
CCHCR1-228ENST00000509552 CLASP1Q7Z460 1538 aa24.19■■□□□ 1.46
CCHCR1-228ENST00000509552 PRDM15P57071 1507 aaPredicted RBP24.19■■□□□ 1.46
CCHCR1-228ENST00000509552 B4GALNT3Q6L9W6 998 aa24.17■■□□□ 1.46
CCHCR1-228ENST00000509552 COL17A1Q9UMD9 1497 aaPredicted RBP24.15■■□□□ 1.46
CCHCR1-228ENST00000509552 NLRP13Q86W25 1043 aa24.15■■□□□ 1.46
CCHCR1-228ENST00000509552 TRAPPC8Q9Y2L5 1435 aa24.15■■□□□ 1.46
CCHCR1-228ENST00000509552 RNF123Q5XPI4 1314 aa24.15■■□□□ 1.46
CCHCR1-228ENST00000509552 PARD3Q8TEW0 1356 aa24.14■■□□□ 1.45
CCHCR1-228ENST00000509552 SPAG9O60271 1321 aaKnown RBP24.13■■□□□ 1.45
CCHCR1-228ENST00000509552 WASHC2CQ9Y4E1 1318 aa24.13■■□□□ 1.45
CCHCR1-228ENST00000509552 TESK2Q96S53 571 aa24.12■■□□□ 1.45
CCHCR1-228ENST00000509552 RTEL1-TNFRSF6BF6WH68 1400 aa24.11■■□□□ 1.45
CCHCR1-228ENST00000509552 TMF1P82094 1093 aa24.11■■□□□ 1.45
CCHCR1-228ENST00000509552 ARAP3Q8WWN8 1544 aa24.1■■□□□ 1.45
CCHCR1-228ENST00000509552 PER1O15534 1290 aaPredicted RBP24.1■■□□□ 1.45
CCHCR1-228ENST00000509552 FANCIQ9NVI1 1328 aa24.1■■□□□ 1.45
CCHCR1-228ENST00000509552 DISP3Q9P2K9 1392 aa24.09■■□□□ 1.45
CCHCR1-228ENST00000509552 SENP3-EIF4A1A0A087X0R7 540 aa24.07■■□□□ 1.44
CCHCR1-228ENST00000509552 RNF17Q9BXT8 1623 aaKnown RBP24.05■■□□□ 1.44
CCHCR1-228ENST00000509552 AFAP1Q8N556 730 aa24.05■■□□□ 1.44
CCHCR1-228ENST00000509552 ZFYVE16Q7Z3T8 1539 aa24.04■■□□□ 1.44
CCHCR1-228ENST00000509552 PANK3Q9H999 370 aa24.04■■□□□ 1.44
CCHCR1-228ENST00000509552 STAC3Q96MF2 364 aa24.03■■□□□ 1.44
CCHCR1-228ENST00000509552 TRPM2O94759 1503 aa24.02■■□□□ 1.44
CCHCR1-228ENST00000509552 CCDC136Q96JN2 1154 aa24.01■■□□□ 1.43
CCHCR1-228ENST00000509552 CC2D1BQ5T0F9 858 aaKnown RBP24.01■■□□□ 1.43
CCHCR1-228ENST00000509552 PDE3BQ13370 1112 aa24■■□□□ 1.43
CCHCR1-228ENST00000509552 WDR7Q9Y4E6 1490 aa24■■□□□ 1.43
CCHCR1-228ENST00000509552 MADDQ8WXG6 1647 aa23.99■■□□□ 1.43
CCHCR1-228ENST00000509552 KANK1Q14678 1352 aa23.99■■□□□ 1.43
CCHCR1-228ENST00000509552 PTPRTO14522 1441 aa23.98■■□□□ 1.43
CCHCR1-228ENST00000509552 DEPDC5O75140 1603 aa23.97■■□□□ 1.43
CCHCR1-228ENST00000509552 SPHKAPQ2M3C7 1700 aa23.97■■□□□ 1.43
CCHCR1-228ENST00000509552 INSRP06213 1382 aa23.97■■□□□ 1.43
CCHCR1-228ENST00000509552 CEP152O94986 1710 aa23.96■■□□□ 1.43
CCHCR1-228ENST00000509552 FANCAO15360 1455 aa23.96■■□□□ 1.43
CCHCR1-228ENST00000509552 MSH5O43196 834 aa23.95■■□□□ 1.43
CCHCR1-228ENST00000509552 ATP7AQ04656 1500 aa23.95■■□□□ 1.42
CCHCR1-228ENST00000509552 TET3O43151 1660 aa23.95■■□□□ 1.42
CCHCR1-228ENST00000509552 ZMYM4Q5VZL5 1548 aa23.94■■□□□ 1.42
CCHCR1-228ENST00000509552 CDCA8Q53HL2 280 aa23.94■■□□□ 1.42
CCHCR1-228ENST00000509552 ABCA9Q8IUA7 1624 aa23.94■■□□□ 1.42
CCHCR1-228ENST00000509552 MYT1LQ9UL68 1186 aa23.93■■□□□ 1.42
CCHCR1-228ENST00000509552 SALL2Q9Y467 1007 aaPredicted RBP23.93■■□□□ 1.42
CCHCR1-228ENST00000509552 IQGAP1P46940 1657 aa23.93■■□□□ 1.42
CCHCR1-228ENST00000509552 SCAPERQ9BY12 1400 aa23.92■■□□□ 1.42
CCHCR1-228ENST00000509552 INO80Q9ULG1 1556 aaPredicted RBP23.92■■□□□ 1.42
CCHCR1-228ENST00000509552 RRP1P56182 461 aaKnown RBP23.92■■□□□ 1.42
CCHCR1-228ENST00000509552 RCAN3Q9UKA8 241 aa23.92■■□□□ 1.42
CCHCR1-228ENST00000509552 CLTCL1P53675 1640 aa23.92■■□□□ 1.42
CCHCR1-228ENST00000509552 SCAF11Q99590 1463 aaKnown RBP23.91■■□□□ 1.42
CCHCR1-228ENST00000509552 KIF3BO15066 747 aa23.89■■□□□ 1.42
CCHCR1-228ENST00000509552 KNSTRNQ9Y448 316 aa23.89■■□□□ 1.42
CCHCR1-228ENST00000509552 ADGRL1O94910 1474 aa23.89■■□□□ 1.42
CCHCR1-228ENST00000509552 BLMP54132 1417 aaPredicted RBP23.89■■□□□ 1.41
CCHCR1-228ENST00000509552 VWDEQ8N2E2 1590 aa23.89■■□□□ 1.41
CCHCR1-228ENST00000509552 ERICH6Q7L0X2 663 aa23.89■■□□□ 1.41
CCHCR1-228ENST00000509552 EIF3AQ14152 1382 aaKnown RBP23.87■■□□□ 1.41
CCHCR1-228ENST00000509552 NEURL4Q96JN8 1562 aa23.84■■□□□ 1.41
CCHCR1-228ENST00000509552 SYNMO15061 1565 aa23.83■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms