RNA–Protein interactions for RNA: ENST00000509490.5

PDGFRA-208, Transcript of platelet derived growth factor receptor alpha, humanhuman

TSL 1 (best)

Gene PDGFRA, Length 2,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRA-208ENST00000509490 JPH4Q96JJ6 628 aa12.6□□□□□ -0.39
PDGFRA-208ENST00000509490 BRD4O60885 1362 aaPredicted RBP12.59□□□□□ -0.39
PDGFRA-208ENST00000509490 KIF15Q9NS87 1388 aa12.59□□□□□ -0.39
PDGFRA-208ENST00000509490 FAM135AQ9P2D6 1515 aa12.59□□□□□ -0.39
PDGFRA-208ENST00000509490 EIF2AK4Q9P2K8 1649 aaKnown RBP12.58□□□□□ -0.4
PDGFRA-208ENST00000509490 NUDCQ9Y266 331 aa12.57□□□□□ -0.4
PDGFRA-208ENST00000509490 MSH5O43196 834 aa12.57□□□□□ -0.4
PDGFRA-208ENST00000509490 PRDM15P57071 1507 aaPredicted RBP12.57□□□□□ -0.4
PDGFRA-208ENST00000509490 PLEKHD1A6NEE1 506 aa12.57□□□□□ -0.4
PDGFRA-208ENST00000509490 PNISRQ8TF01 805 aaKnown RBP12.57□□□□□ -0.4
PDGFRA-208ENST00000509490 CHMP7Q8WUX9 453 aaPredicted RBP12.57□□□□□ -0.4
PDGFRA-208ENST00000509490 NUP155O75694 1391 aa12.56□□□□□ -0.4
PDGFRA-208ENST00000509490 PLEKHH2Q8IVE3 1493 aa12.55□□□□□ -0.4
PDGFRA-208ENST00000509490 PRAG1Q86YV5 1406 aa12.55□□□□□ -0.4
PDGFRA-208ENST00000509490 RNF17Q9BXT8 1623 aaKnown RBP12.55□□□□□ -0.4
PDGFRA-208ENST00000509490 RALBP1Q15311 655 aa12.55□□□□□ -0.4
PDGFRA-208ENST00000509490 ERCC6Q03468 1493 aa12.54□□□□□ -0.4
PDGFRA-208ENST00000509490 WASHC2CQ9Y4E1 1318 aa12.54□□□□□ -0.4
PDGFRA-208ENST00000509490 FAM9BQ8IZU0 186 aa12.54□□□□□ -0.4
PDGFRA-208ENST00000509490 MYT1LQ9UL68 1186 aa12.54□□□□□ -0.4
PDGFRA-208ENST00000509490 PARD3Q8TEW0 1356 aa12.53□□□□□ -0.4
PDGFRA-208ENST00000509490 ARID3CA6NKF2 412 aa12.52□□□□□ -0.4
PDGFRA-208ENST00000509490 COL17A1Q9UMD9 1497 aaPredicted RBP12.52□□□□□ -0.41
PDGFRA-208ENST00000509490 MYBBP1AQ9BQG0 1328 aaKnown RBP12.52□□□□□ -0.41
PDGFRA-208ENST00000509490 PLA2R1Q13018 1463 aa12.51□□□□□ -0.41
PDGFRA-208ENST00000509490 NEURL4Q96JN8 1562 aa12.51□□□□□ -0.41
PDGFRA-208ENST00000509490 MYO5CQ9NQX4 1742 aa12.51□□□□□ -0.41
PDGFRA-208ENST00000509490 DUOX2Q9NRD8 1548 aa12.5□□□□□ -0.41
PDGFRA-208ENST00000509490 TSPY4P0CV99 314 aa12.5□□□□□ -0.41
PDGFRA-208ENST00000509490 TSPY10P0CW01 314 aa12.5□□□□□ -0.41
PDGFRA-208ENST00000509490 ERBINQ96RT1 1412 aa12.5□□□□□ -0.41
PDGFRA-208ENST00000509490 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.49□□□□□ -0.41
PDGFRA-208ENST00000509490 TTC37Q6PGP7 1564 aa12.49□□□□□ -0.41
PDGFRA-208ENST00000509490 A2MP01023 1474 aa12.48□□□□□ -0.41
PDGFRA-208ENST00000509490 ARAP3Q8WWN8 1544 aa12.48□□□□□ -0.41
PDGFRA-208ENST00000509490 CARD11Q9BXL7 1154 aa12.48□□□□□ -0.41
PDGFRA-208ENST00000509490 ABCC2Q92887 1545 aa12.48□□□□□ -0.41
PDGFRA-208ENST00000509490 PDE3BQ13370 1112 aa12.48□□□□□ -0.41
PDGFRA-208ENST00000509490 BLMP54132 1417 aaPredicted RBP12.47□□□□□ -0.41
PDGFRA-208ENST00000509490 SYCP2Q9BX26 1530 aa12.47□□□□□ -0.41
PDGFRA-208ENST00000509490 IRX6P78412 446 aaPredicted RBP12.47□□□□□ -0.41
PDGFRA-208ENST00000509490 CCDC144AA2RUR9 1427 aa12.47□□□□□ -0.41
PDGFRA-208ENST00000509490 UHRF1BP1LA0JNW5 1464 aa12.45□□□□□ -0.42
PDGFRA-208ENST00000509490 ZNF777Q9ULD5 760 aaPredicted RBP12.45□□□□□ -0.42
PDGFRA-208ENST00000509490 IQGAP1P46940 1657 aa12.45□□□□□ -0.42
PDGFRA-208ENST00000509490 PER1O15534 1290 aaPredicted RBP12.44□□□□□ -0.42
PDGFRA-208ENST00000509490 CHD1O14646 1710 aa12.44□□□□□ -0.42
PDGFRA-208ENST00000509490 ST20-MTHFSA0A0A6YYL1 179 aa12.44□□□□□ -0.42
PDGFRA-208ENST00000509490 NLRP13Q86W25 1043 aa12.44□□□□□ -0.42
PDGFRA-208ENST00000509490 DEPDC5O75140 1603 aa12.44□□□□□ -0.42
PDGFRA-208ENST00000509490 B4GALNT3Q6L9W6 998 aa12.43□□□□□ -0.42
PDGFRA-208ENST00000509490 KIAA1210Q9ULL0 1709 aa12.43□□□□□ -0.42
PDGFRA-208ENST00000509490 TMC1Q8TDI8 760 aa12.42□□□□□ -0.42
PDGFRA-208ENST00000509490 STAC3Q96MF2 364 aa12.42□□□□□ -0.42
PDGFRA-208ENST00000509490 ABCC1P33527 1531 aa12.42□□□□□ -0.42
PDGFRA-208ENST00000509490 CLASP1Q7Z460 1538 aa12.42□□□□□ -0.42
PDGFRA-208ENST00000509490 MADDQ8WXG6 1647 aa12.42□□□□□ -0.42
PDGFRA-208ENST00000509490 ARHGAP5Q13017 1502 aa12.42□□□□□ -0.42
PDGFRA-208ENST00000509490 SPHKAPQ2M3C7 1700 aa12.41□□□□□ -0.42
PDGFRA-208ENST00000509490 CEP152O94986 1710 aa12.41□□□□□ -0.42
PDGFRA-208ENST00000509490 RTEL1-TNFRSF6BF6WH68 1400 aa12.4□□□□□ -0.42
PDGFRA-208ENST00000509490 TRPM2O94759 1503 aa12.4□□□□□ -0.42
PDGFRA-208ENST00000509490 HNRNPMP52272 730 aaKnown RBP eCLIP12.4□□□□□ -0.42
PDGFRA-208ENST00000509490 TESK2Q96S53 571 aa12.4□□□□□ -0.42
PDGFRA-208ENST00000509490 PLCH2O75038 1416 aa12.4□□□□□ -0.42
PDGFRA-208ENST00000509490 SCAPERQ9BY12 1400 aa12.4□□□□□ -0.42
PDGFRA-208ENST00000509490 DCAF11Q8TEB1 546 aa12.39□□□□□ -0.43
PDGFRA-208ENST00000509490 SYNMO15061 1565 aa12.39□□□□□ -0.43
PDGFRA-208ENST00000509490 VWDEQ8N2E2 1590 aa12.39□□□□□ -0.43
PDGFRA-208ENST00000509490 PTPRTO14522 1441 aa12.39□□□□□ -0.43
PDGFRA-208ENST00000509490 RRP1P56182 461 aaKnown RBP12.38□□□□□ -0.43
PDGFRA-208ENST00000509490 NPC1L1Q9UHC9 1359 aa12.37□□□□□ -0.43
PDGFRA-208ENST00000509490 WDR7Q9Y4E6 1490 aa12.37□□□□□ -0.43
PDGFRA-208ENST00000509490 ZCCHC11Q5TAX3 1644 aaKnown RBP12.36□□□□□ -0.43
PDGFRA-208ENST00000509490 TET3O43151 1660 aa12.36□□□□□ -0.43
PDGFRA-208ENST00000509490 CCDC136Q96JN2 1154 aa12.36□□□□□ -0.43
PDGFRA-208ENST00000509490 ZNF326Q5BKZ1 582 aaKnown RBP12.35□□□□□ -0.43
PDGFRA-208ENST00000509490 DISP3Q9P2K9 1392 aa12.35□□□□□ -0.43
PDGFRA-208ENST00000509490 MS4A1P11836 297 aa12.35□□□□□ -0.43
PDGFRA-208ENST00000509490 PPP6R1Q9UPN7 881 aa12.34□□□□□ -0.43
PDGFRA-208ENST00000509490 NOP58Q9Y2X3 529 aaKnown RBP12.34□□□□□ -0.43
PDGFRA-208ENST00000509490 ZFYVE16Q7Z3T8 1539 aa12.34□□□□□ -0.43
PDGFRA-208ENST00000509490 TCERG1O14776 1098 aaKnown RBP12.34□□□□□ -0.43
PDGFRA-208ENST00000509490 MYOM1P52179 1685 aa12.33□□□□□ -0.44
PDGFRA-208ENST00000509490 INO80Q9ULG1 1556 aaPredicted RBP12.33□□□□□ -0.44
PDGFRA-208ENST00000509490 ERICH6Q7L0X2 663 aa12.33□□□□□ -0.44
PDGFRA-208ENST00000509490 ADRA2BP18089 450 aa12.33□□□□□ -0.44
PDGFRA-208ENST00000509490 RCAN3Q9UKA8 241 aa12.33□□□□□ -0.44
PDGFRA-208ENST00000509490 FBLN2P98095 1184 aa12.32□□□□□ -0.44
PDGFRA-208ENST00000509490 BCL11AQ9H165 835 aa12.32□□□□□ -0.44
PDGFRA-208ENST00000509490 PIK3C2GO75747 1445 aa12.32□□□□□ -0.44
PDGFRA-208ENST00000509490 IPO9Q96P70 1041 aaKnown RBP12.31□□□□□ -0.44
PDGFRA-208ENST00000509490 MYO3AQ8NEV4 1616 aa12.31□□□□□ -0.44
PDGFRA-208ENST00000509490 ABCA9Q8IUA7 1624 aa12.31□□□□□ -0.44
PDGFRA-208ENST00000509490 SCAF11Q99590 1463 aaKnown RBP12.31□□□□□ -0.44
PDGFRA-208ENST00000509490 TMF1P82094 1093 aa12.3□□□□□ -0.44
PDGFRA-208ENST00000509490 MYOM2P54296 1465 aa12.3□□□□□ -0.44
PDGFRA-208ENST00000509490 IFT172Q9UG01 1749 aa12.3□□□□□ -0.44
PDGFRA-208ENST00000509490 NBPF1Q3BBV0 1214 aa12.3□□□□□ -0.44
PDGFRA-208ENST00000509490 KDM2AQ9Y2K7 1162 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms