RNA–Protein interactions for RNA: ENST00000505982.1

CHD1-204, Transcript of chromodomain helicase DNA binding protein 1, humanhuman

TSL 3

Gene CHD1, Length 758 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD1-204ENST00000505982 TYW1BQ6NUM6 668 aa13.82□□□□□ -0.2
CHD1-204ENST00000505982 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.8□□□□□ -0.2
CHD1-204ENST00000505982 RABGEF1Q9UJ41 708 aa13.8□□□□□ -0.2
CHD1-204ENST00000505982 IFFO2Q5TF58 517 aa13.78□□□□□ -0.2
CHD1-204ENST00000505982 CAMK2BQ13554 666 aa13.77□□□□□ -0.21
CHD1-204ENST00000505982 COL9A1P20849 921 aa13.75□□□□□ -0.21
CHD1-204ENST00000505982 PROX2Q3B8N5 592 aa13.75□□□□□ -0.21
CHD1-204ENST00000505982 BBXQ8WY36 941 aaPredicted RBP13.75□□□□□ -0.21
CHD1-204ENST00000505982 EPAS1Q99814 870 aa13.75□□□□□ -0.21
CHD1-204ENST00000505982 ANKK1Q8NFD2 765 aa13.73□□□□□ -0.21
CHD1-204ENST00000505982 DPYSL4O14531 572 aa13.72□□□□□ -0.21
CHD1-204ENST00000505982 RGS20O76081 388 aa13.71□□□□□ -0.21
CHD1-204ENST00000505982 LAPTM4BQ86VI4 370 aa13.71□□□□□ -0.21
CHD1-204ENST00000505982 ONECUT3O60422 494 aaPredicted RBP13.7□□□□□ -0.22
CHD1-204ENST00000505982 C6orf132Q5T0Z8 1188 aa13.7□□□□□ -0.22
CHD1-204ENST00000505982 PAXIP1Q6ZW49 1069 aaPredicted RBP13.68□□□□□ -0.22
CHD1-204ENST00000505982 CFAP44Q96MT7 982 aa13.68□□□□□ -0.22
CHD1-204ENST00000505982 KIAA1468Q9P260 1216 aa13.68□□□□□ -0.22
CHD1-204ENST00000505982 A0A0G2JS52 829 aa13.65□□□□□ -0.22
CHD1-204ENST00000505982 ZFRQ96KR1 1074 aaKnown RBP13.64□□□□□ -0.23
CHD1-204ENST00000505982 SOWAHBA6NEL2 793 aa13.63□□□□□ -0.23
CHD1-204ENST00000505982 VSIG10Q8N0Z9 540 aa13.63□□□□□ -0.23
CHD1-204ENST00000505982 DDX12PQ92771 950 aa13.63□□□□□ -0.23
CHD1-204ENST00000505982 RBM33Q96EV2 1170 aaKnown RBP13.63□□□□□ -0.23
CHD1-204ENST00000505982 BCAMP50895 628 aa13.62□□□□□ -0.23
CHD1-204ENST00000505982 TRIM6-TRIM34B2RNG4 842 aa13.61□□□□□ -0.23
CHD1-204ENST00000505982 NYAP1Q6ZVC0 841 aa13.61□□□□□ -0.23
CHD1-204ENST00000505982 SEPT9Q9UHD8 586 aaPredicted RBP13.59□□□□□ -0.23
CHD1-204ENST00000505982 ITGBL1O95965 494 aaPredicted RBP13.58□□□□□ -0.24
CHD1-204ENST00000505982 SPRYD3Q8NCJ5 442 aa13.58□□□□□ -0.24
CHD1-204ENST00000505982 FAM98CQ17RN3 349 aaKnown RBP13.57□□□□□ -0.24
CHD1-204ENST00000505982 SPDYE16A6NNV3 312 aaPredicted RBP13.55□□□□□ -0.24
CHD1-204ENST00000505982 NBR1Q14596 966 aa13.55□□□□□ -0.24
CHD1-204ENST00000505982 PDIA6Q15084 440 aa13.55□□□□□ -0.24
CHD1-204ENST00000505982 MAP3K7O43318 606 aa13.54□□□□□ -0.24
CHD1-204ENST00000505982 EN1Q05925 392 aaPredicted RBP13.54□□□□□ -0.24
CHD1-204ENST00000505982 IRX2Q9BZI1 471 aaPredicted RBP13.54□□□□□ -0.24
CHD1-204ENST00000505982 WBP1LQ9NX94 342 aa13.54□□□□□ -0.24
CHD1-204ENST00000505982 PACS2Q86VP3 889 aa13.53□□□□□ -0.24
CHD1-204ENST00000505982 BCANQ96GW7 911 aa13.52□□□□□ -0.25
CHD1-204ENST00000505982 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.52□□□□□ -0.25
CHD1-204ENST00000505982 LRCH3Q96II8 777 aa13.51□□□□□ -0.25
CHD1-204ENST00000505982 TSR3Q9UJK0 312 aaKnown RBP13.51□□□□□ -0.25
CHD1-204ENST00000505982 KCNC4Q03721 635 aa13.49□□□□□ -0.25
CHD1-204ENST00000505982 E2F4Q16254 413 aa13.49□□□□□ -0.25
CHD1-204ENST00000505982 TSR1Q2NL82 804 aaKnown RBP13.49□□□□□ -0.25
CHD1-204ENST00000505982 HPS5Q9UPZ3 1129 aa13.48□□□□□ -0.25
CHD1-204ENST00000505982 WDR70Q9NW82 654 aa13.47□□□□□ -0.25
CHD1-204ENST00000505982 TSKSQ9UJT2 592 aa13.47□□□□□ -0.25
CHD1-204ENST00000505982 CERKQ8TCT0 537 aa13.45□□□□□ -0.26
CHD1-204ENST00000505982 CDCA7LQ96GN5 454 aa13.43□□□□□ -0.26
CHD1-204ENST00000505982 KDM2AQ9Y2K7 1162 aa13.43□□□□□ -0.26
CHD1-204ENST00000505982 ARIH1Q9Y4X5 557 aaPredicted RBP13.43□□□□□ -0.26
CHD1-204ENST00000505982 GRXCR2A6NFK2 248 aa13.41□□□□□ -0.26
CHD1-204ENST00000505982 PRSS12P56730 875 aa13.41□□□□□ -0.26
CHD1-204ENST00000505982 PPP4CP60510 307 aa13.41□□□□□ -0.26
CHD1-204ENST00000505982 TSHZ2Q9NRE2 1034 aa13.41□□□□□ -0.26
CHD1-204ENST00000505982 SMAPO00193 183 aa13.36□□□□□ -0.27
CHD1-204ENST00000505982 NBPF26B4DH59 902 aa13.35□□□□□ -0.27
CHD1-204ENST00000505982 SAMD7Q7Z3H4 446 aa13.35□□□□□ -0.27
CHD1-204ENST00000505982 TATDN2Q93075 761 aa13.35□□□□□ -0.27
CHD1-204ENST00000505982 PRIM1P49642 420 aaKnown RBP13.34□□□□□ -0.27
CHD1-204ENST00000505982 FAM198AQ9UFP1 575 aa13.34□□□□□ -0.27
CHD1-204ENST00000505982 PNMA3Q9UL41 463 aa13.34□□□□□ -0.27
CHD1-204ENST00000505982 HDGFP51858 240 aaKnown RBP13.32□□□□□ -0.28
CHD1-204ENST00000505982 OSBPP22059 807 aa13.31□□□□□ -0.28
CHD1-204ENST00000505982 RBM27Q9P2N5 1060 aaKnown RBP13.29□□□□□ -0.28
CHD1-204ENST00000505982 TJAP1Q5JTD0 557 aa13.27□□□□□ -0.29
CHD1-204ENST00000505982 NUDT18Q6ZVK8 323 aa13.27□□□□□ -0.29
CHD1-204ENST00000505982 CDHR5Q9HBB8 845 aa13.27□□□□□ -0.29
CHD1-204ENST00000505982 C3orf80F5H4A9 247 aa13.26□□□□□ -0.29
CHD1-204ENST00000505982 Q6ZNB5 142 aa13.25□□□□□ -0.29
CHD1-204ENST00000505982 IL21Q9HBE4 155 aa13.24□□□□□ -0.29
CHD1-204ENST00000505982 RNF40O75150 1001 aa13.23□□□□□ -0.29
CHD1-204ENST00000505982 MTRQ99707 1265 aa13.23□□□□□ -0.29
CHD1-204ENST00000505982 LAPTM4AQ15012 233 aa13.22□□□□□ -0.29
CHD1-204ENST00000505982 NECTIN2Q92692 538 aa13.22□□□□□ -0.29
CHD1-204ENST00000505982 PRKCSHP14314 528 aaPredicted RBP13.19□□□□□ -0.3
CHD1-204ENST00000505982 TTC13Q8NBP0 860 aa13.19□□□□□ -0.3
CHD1-204ENST00000505982 PADI6Q6TGC4 694 aa13.18□□□□□ -0.3
CHD1-204ENST00000505982 NPDC1Q9NQX5 325 aaPredicted RBP13.18□□□□□ -0.3
CHD1-204ENST00000505982 APLP1P51693 650 aa13.16□□□□□ -0.3
CHD1-204ENST00000505982 PPP1R18Q6NYC8 613 aa13.16□□□□□ -0.3
CHD1-204ENST00000505982 SLF2Q8IX21 1173 aa13.16□□□□□ -0.3
CHD1-204ENST00000505982 SLC4A3P48751 1232 aa13.15□□□□□ -0.3
CHD1-204ENST00000505982 GFRA3O60609 400 aa13.14□□□□□ -0.31
CHD1-204ENST00000505982 SWT1Q5T5J6 900 aaKnown RBP13.14□□□□□ -0.31
CHD1-204ENST00000505982 ZNF516Q92618 1163 aa13.14□□□□□ -0.31
CHD1-204ENST00000505982 PRKD2Q9BZL6 878 aa13.14□□□□□ -0.31
CHD1-204ENST00000505982 ARHGEF1Q92888 912 aaKnown RBP13.12□□□□□ -0.31
CHD1-204ENST00000505982 EIF4ENIF1Q9NRA8 985 aaKnown RBP13.12□□□□□ -0.31
CHD1-204ENST00000505982 TPRNQ4KMQ1 711 aa13.11□□□□□ -0.31
CHD1-204ENST00000505982 V9GY48 417 aaPredicted RBP13.11□□□□□ -0.31
CHD1-204ENST00000505982 EYA1Q99502 592 aa13.09□□□□□ -0.31
CHD1-204ENST00000505982 GGCXP38435 758 aa13.08□□□□□ -0.32
CHD1-204ENST00000505982 PRR14Q9BWN1 585 aa13.07□□□□□ -0.32
CHD1-204ENST00000505982 MLLT3P42568 568 aaPredicted RBP13.06□□□□□ -0.32
CHD1-204ENST00000505982 COPS2P61201 443 aa13.06□□□□□ -0.32
CHD1-204ENST00000505982 TRAF7Q6Q0C0 670 aa13.05□□□□□ -0.32
CHD1-204ENST00000505982 NKX2-3Q8TAU0 364 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms