RNA–Protein interactions for RNA: ENST00000505615.1

VCAN-206, Transcript of versican, humanhuman

TSL 5

Gene VCAN, Length 810 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-206ENST00000505615 NCOA1Q15788 1441 aa12.12□□□□□ -0.47
VCAN-206ENST00000505615 FAM9AQ8IZU1 332 aaPredicted RBP12.12□□□□□ -0.47
VCAN-206ENST00000505615 CCDC61Q9Y6R9 512 aa12.11□□□□□ -0.47
VCAN-206ENST00000505615 KDM5CP41229 1560 aa12.1□□□□□ -0.47
VCAN-206ENST00000505615 PLEKHD1A6NEE1 506 aa12.1□□□□□ -0.47
VCAN-206ENST00000505615 REREQ9P2R6 1566 aa12.09□□□□□ -0.47
VCAN-206ENST00000505615 DIP2CQ9Y2E4 1556 aa12.09□□□□□ -0.47
VCAN-206ENST00000505615 MYO5CQ9NQX4 1742 aa12.09□□□□□ -0.47
VCAN-206ENST00000505615 ATMINO43313 823 aaPredicted RBP12.09□□□□□ -0.47
VCAN-206ENST00000505615 PLCH2O75038 1416 aa12.09□□□□□ -0.47
VCAN-206ENST00000505615 MED1Q15648 1581 aaPredicted RBP12.09□□□□□ -0.47
VCAN-206ENST00000505615 CDK13Q14004 1512 aaKnown RBP12.07□□□□□ -0.48
VCAN-206ENST00000505615 ABCA6Q8N139 1617 aa12.07□□□□□ -0.48
VCAN-206ENST00000505615 TSPYL2Q9H2G4 693 aaPredicted RBP12.06□□□□□ -0.48
VCAN-206ENST00000505615 METRNQ9UJH8 293 aa12.06□□□□□ -0.48
VCAN-206ENST00000505615 TRAPPC8Q9Y2L5 1435 aa12.05□□□□□ -0.48
VCAN-206ENST00000505615 CAMSAP1Q5T5Y3 1602 aa12.05□□□□□ -0.48
VCAN-206ENST00000505615 ZNF518AQ6AHZ1 1483 aa12.05□□□□□ -0.48
VCAN-206ENST00000505615 SLC39A7Q92504 469 aa12.04□□□□□ -0.48
VCAN-206ENST00000505615 AGLP35573 1532 aa12.04□□□□□ -0.48
VCAN-206ENST00000505615 ZNF335Q9H4Z2 1342 aaPredicted RBP12.03□□□□□ -0.48
VCAN-206ENST00000505615 KIF14Q15058 1648 aa12.02□□□□□ -0.49
VCAN-206ENST00000505615 UBAP1LF5GYI3 381 aa12.02□□□□□ -0.49
VCAN-206ENST00000505615 C7P10643 843 aa12.02□□□□□ -0.49
VCAN-206ENST00000505615 KIF12Q96FN5 646 aa12.02□□□□□ -0.49
VCAN-206ENST00000505615 MROH2AA6NES4 1674 aa12.02□□□□□ -0.49
VCAN-206ENST00000505615 ZNF142P52746 1687 aaPredicted RBP12.02□□□□□ -0.49
VCAN-206ENST00000505615 POTEJP0CG39 1038 aa12.01□□□□□ -0.49
VCAN-206ENST00000505615 EFCAB2Q5VUJ9 269 aa11.99□□□□□ -0.49
VCAN-206ENST00000505615 AFAP1Q8N556 730 aa11.99□□□□□ -0.49
VCAN-206ENST00000505615 MLH3Q9UHC1 1453 aa11.99□□□□□ -0.49
VCAN-206ENST00000505615 KIDINS220Q9ULH0 1771 aa11.98□□□□□ -0.49
VCAN-206ENST00000505615 SUPT6HQ7KZ85 1726 aaKnown RBP11.98□□□□□ -0.49
VCAN-206ENST00000505615 CDC42BPBQ9Y5S2 1711 aa11.98□□□□□ -0.49
VCAN-206ENST00000505615 MYO3AQ8NEV4 1616 aa11.98□□□□□ -0.49
VCAN-206ENST00000505615 NPATQ14207 1427 aa11.98□□□□□ -0.49
VCAN-206ENST00000505615 CNTLNQ9NXG0 1405 aa11.98□□□□□ -0.49
VCAN-206ENST00000505615 ATN1P54259 1190 aaPredicted RBP11.98□□□□□ -0.49
VCAN-206ENST00000505615 ARHGAP5Q13017 1502 aa11.97□□□□□ -0.49
VCAN-206ENST00000505615 PLA2R1Q13018 1463 aa11.97□□□□□ -0.49
VCAN-206ENST00000505615 TCOF1Q13428 1488 aaKnown RBP11.97□□□□□ -0.49
VCAN-206ENST00000505615 RASEFQ8IZ41 740 aa11.97□□□□□ -0.49
VCAN-206ENST00000505615 ITSN2Q9NZM3 1697 aa11.97□□□□□ -0.49
VCAN-206ENST00000505615 NCKAP5LQ9HCH0 1330 aa11.96□□□□□ -0.49
VCAN-206ENST00000505615 HSPA1LP34931 641 aa11.95□□□□□ -0.5
VCAN-206ENST00000505615 RANGAP1P46060 587 aaPredicted RBP11.95□□□□□ -0.5
VCAN-206ENST00000505615 BMP2KQ9NSY1 1161 aaPredicted RBP11.95□□□□□ -0.5
VCAN-206ENST00000505615 ABCC1P33527 1531 aa11.95□□□□□ -0.5
VCAN-206ENST00000505615 CEP170BQ9Y4F5 1589 aaPredicted RBP11.94□□□□□ -0.5
VCAN-206ENST00000505615 TRPC6Q9Y210 931 aa11.94□□□□□ -0.5
VCAN-206ENST00000505615 LRRIQ1Q96JM4 1722 aa11.94□□□□□ -0.5
VCAN-206ENST00000505615 ALKQ9UM73 1620 aa11.93□□□□□ -0.5
VCAN-206ENST00000505615 PLEKHG5O94827 1062 aa11.93□□□□□ -0.5
VCAN-206ENST00000505615 MIER1Q8N108 512 aa11.93□□□□□ -0.5
VCAN-206ENST00000505615 PREX2Q70Z35 1606 aa11.93□□□□□ -0.5
VCAN-206ENST00000505615 MAP3K13O43283 966 aa11.92□□□□□ -0.5
VCAN-206ENST00000505615 TROQ12816 1431 aaPredicted RBP11.92□□□□□ -0.5
VCAN-206ENST00000505615 CLTCQ00610 1675 aaKnown RBP11.91□□□□□ -0.5
VCAN-206ENST00000505615 POTEFA5A3E0 1075 aa11.91□□□□□ -0.5
VCAN-206ENST00000505615 TIE1P35590 1138 aa11.91□□□□□ -0.5
VCAN-206ENST00000505615 PKD2Q13563 968 aa11.91□□□□□ -0.5
VCAN-206ENST00000505615 POTEMA6NI47 508 aa11.9□□□□□ -0.5
VCAN-206ENST00000505615 POLR1AO95602 1720 aaPredicted RBP11.9□□□□□ -0.5
VCAN-206ENST00000505615 ESF1Q9H501 851 aaKnown RBP11.9□□□□□ -0.5
VCAN-206ENST00000505615 PLSCR2Q9NRY7 297 aa11.9□□□□□ -0.5
VCAN-206ENST00000505615 ZMYM3Q14202 1370 aa11.9□□□□□ -0.5
VCAN-206ENST00000505615 NEURL4Q96JN8 1562 aa11.89□□□□□ -0.51
VCAN-206ENST00000505615 MAMSTRQ6ZN01 415 aa11.89□□□□□ -0.51
VCAN-206ENST00000505615 MYT1LQ9UL68 1186 aa11.89□□□□□ -0.51
VCAN-206ENST00000505615 PTPRKQ15262 1439 aa11.88□□□□□ -0.51
VCAN-206ENST00000505615 CPS1P31327 1500 aa11.88□□□□□ -0.51
VCAN-206ENST00000505615 SAMD9LQ8IVG5 1584 aa11.88□□□□□ -0.51
VCAN-206ENST00000505615 CDC42BPAQ5VT25 1732 aa11.87□□□□□ -0.51
VCAN-206ENST00000505615 PLXNC1O60486 1568 aa11.87□□□□□ -0.51
VCAN-206ENST00000505615 DNMT1P26358 1616 aaKnown RBP11.86□□□□□ -0.51
VCAN-206ENST00000505615 PIP4K2BP78356 416 aa11.86□□□□□ -0.51
VCAN-206ENST00000505615 POTEGQ6S5H5 508 aa11.86□□□□□ -0.51
VCAN-206ENST00000505615 CLIP1P30622 1438 aa11.85□□□□□ -0.51
VCAN-206ENST00000505615 FMN1Q68DA7 1419 aa11.85□□□□□ -0.51
VCAN-206ENST00000505615 VWDEQ8N2E2 1590 aa11.84□□□□□ -0.51
VCAN-206ENST00000505615 A2ML1A8K2U0 1454 aa11.84□□□□□ -0.51
VCAN-206ENST00000505615 SHANK2Q9UPX8 1470 aa11.84□□□□□ -0.51
VCAN-206ENST00000505615 LCE2DQ5TA82 110 aaPredicted RBP11.84□□□□□ -0.51
VCAN-206ENST00000505615 EEA1Q15075 1411 aa11.84□□□□□ -0.51
VCAN-206ENST00000505615 TTLL13PA6NNM8 815 aa11.83□□□□□ -0.52
VCAN-206ENST00000505615 TOM1O60784 492 aa11.83□□□□□ -0.52
VCAN-206ENST00000505615 NUBP1P53384 320 aa11.83□□□□□ -0.52
VCAN-206ENST00000505615 SGIP1Q9BQI5 828 aa11.83□□□□□ -0.52
VCAN-206ENST00000505615 INO80Q9ULG1 1556 aaPredicted RBP11.83□□□□□ -0.52
VCAN-206ENST00000505615 ARHGAP35Q9NRY4 1499 aa11.83□□□□□ -0.52
VCAN-206ENST00000505615 PLCD3Q8N3E9 789 aa11.82□□□□□ -0.52
VCAN-206ENST00000505615 CDK11AQ9UQ88 783 aaPredicted RBP11.82□□□□□ -0.52
VCAN-206ENST00000505615 STRCP1A6NGW2 1772 aa11.82□□□□□ -0.52
VCAN-206ENST00000505615 SYCP2Q9BX26 1530 aa11.81□□□□□ -0.52
VCAN-206ENST00000505615 SCUBE2Q9NQ36 999 aa11.81□□□□□ -0.52
VCAN-206ENST00000505615 ATP7AQ04656 1500 aa11.81□□□□□ -0.52
VCAN-206ENST00000505615 RGS17Q9UGC6 210 aaPredicted RBP11.8□□□□□ -0.52
VCAN-206ENST00000505615 ZBTB47Q9UFB7 747 aaPredicted RBP11.79□□□□□ -0.52
VCAN-206ENST00000505615 ATP1B4Q9UN42 357 aaPredicted RBP11.79□□□□□ -0.52
VCAN-206ENST00000505615 A2MP01023 1474 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms