RNA–Protein interactions for RNA: ENST00000504430.5

NIPBL-204, Transcript of NIPBL, cohesin loading factor, humanhuman

TSL 2

Gene NIPBL, Length 3,455 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-204ENST00000504430 ARID4BQ4LE39 1312 aaPredicted RBP7.7□□□□□ -1.18
NIPBL-204ENST00000504430 CCDC136Q96JN2 1154 aa7.7□□□□□ -1.18
NIPBL-204ENST00000504430 ZNF467Q7Z7K2 595 aaPredicted RBP7.69□□□□□ -1.18
NIPBL-204ENST00000504430 IGSF5Q9NSI5 407 aa7.69□□□□□ -1.18
NIPBL-204ENST00000504430 KIAA1522Q9P206 1035 aaPredicted RBP7.69□□□□□ -1.18
NIPBL-204ENST00000504430 A0A0U1RQG5 324 aaPredicted RBP7.68□□□□□ -1.18
NIPBL-204ENST00000504430 SKIV2LQ15477 1246 aaKnown RBP7.68□□□□□ -1.18
NIPBL-204ENST00000504430 CDCA8Q53HL2 280 aa7.68□□□□□ -1.18
NIPBL-204ENST00000504430 NLRP6P59044 892 aa7.68□□□□□ -1.18
NIPBL-204ENST00000504430 RNF39Q9H2S5 420 aa7.68□□□□□ -1.18
NIPBL-204ENST00000504430 GNPATO15228 680 aa7.67□□□□□ -1.18
NIPBL-204ENST00000504430 ABL2P42684 1182 aa7.67□□□□□ -1.18
NIPBL-204ENST00000504430 GTF3C5Q9Y5Q8 519 aaPredicted RBP7.67□□□□□ -1.18
NIPBL-204ENST00000504430 PHOX2BQ99453 314 aa7.67□□□□□ -1.18
NIPBL-204ENST00000504430 PRDM16Q9HAZ2 1276 aa7.67□□□□□ -1.18
NIPBL-204ENST00000504430 ACIN1Q9UKV3 1341 aaKnown RBP7.66□□□□□ -1.18
NIPBL-204ENST00000504430 SH3D19Q5HYK7 790 aa7.66□□□□□ -1.18
NIPBL-204ENST00000504430 PPP1R1BQ9UD71 204 aaPredicted RBP7.66□□□□□ -1.18
NIPBL-204ENST00000504430 PRR29P0C7W0 189 aa7.65□□□□□ -1.18
NIPBL-204ENST00000504430 PPP1R15BQ5SWA1 713 aa7.65□□□□□ -1.18
NIPBL-204ENST00000504430 ADAMTS19Q8TE59 1207 aa7.65□□□□□ -1.18
NIPBL-204ENST00000504430 CADPSQ9ULU8 1353 aa7.65□□□□□ -1.19
NIPBL-204ENST00000504430 BRD1O95696 1058 aa7.65□□□□□ -1.19
NIPBL-204ENST00000504430 MDM2Q00987 491 aaPredicted RBP7.65□□□□□ -1.19
NIPBL-204ENST00000504430 PRIM1P49642 420 aaKnown RBP7.64□□□□□ -1.19
NIPBL-204ENST00000504430 PDIA6Q15084 440 aa7.64□□□□□ -1.19
NIPBL-204ENST00000504430 FAM161AQ3B820 660 aa7.64□□□□□ -1.19
NIPBL-204ENST00000504430 SND1Q7KZF4 910 aaKnown RBP eCLIP7.64□□□□□ -1.19
NIPBL-204ENST00000504430 TBC1D2BQ9UPU7 963 aa7.64□□□□□ -1.19
NIPBL-204ENST00000504430 MTMR14Q8NCE2 650 aa7.63□□□□□ -1.19
NIPBL-204ENST00000504430 MRRFQ96E11 262 aaKnown RBP7.63□□□□□ -1.19
NIPBL-204ENST00000504430 BEGAINQ9BUH8 593 aa7.63□□□□□ -1.19
NIPBL-204ENST00000504430 IFNL1Q8IU54 200 aa7.63□□□□□ -1.19
NIPBL-204ENST00000504430 DDX12PQ92771 950 aa7.62□□□□□ -1.19
NIPBL-204ENST00000504430 PSMD1Q99460 953 aa7.62□□□□□ -1.19
NIPBL-204ENST00000504430 AMOTL2Q9Y2J4 779 aa7.62□□□□□ -1.19
NIPBL-204ENST00000504430 TICAM2Q86XR7 235 aa7.61□□□□□ -1.19
NIPBL-204ENST00000504430 PPP1R15AO75807 674 aaPredicted RBP7.61□□□□□ -1.19
NIPBL-204ENST00000504430 GNL3Q9BVP2 549 aaKnown RBP eCLIP7.61□□□□□ -1.19
NIPBL-204ENST00000504430 SPDYE5A6NIY4 337 aa7.6□□□□□ -1.19
NIPBL-204ENST00000504430 DSG2Q14126 1118 aa7.6□□□□□ -1.19
NIPBL-204ENST00000504430 KCNA1Q09470 495 aa7.59□□□□□ -1.19
NIPBL-204ENST00000504430 PBXIP1Q96AQ6 731 aa7.59□□□□□ -1.19
NIPBL-204ENST00000504430 BCCIPQ9P287 314 aaKnown RBP eCLIP7.59□□□□□ -1.19
NIPBL-204ENST00000504430 RFC5P40937 340 aa7.59□□□□□ -1.19
NIPBL-204ENST00000504430 SIRT1Q96EB6 747 aa7.59□□□□□ -1.19
NIPBL-204ENST00000504430 OSBPP22059 807 aa7.58□□□□□ -1.2
NIPBL-204ENST00000504430 CFAP70Q5T0N1 1121 aa7.58□□□□□ -1.2
NIPBL-204ENST00000504430 CHADLQ6NUI6 762 aa7.58□□□□□ -1.2
NIPBL-204ENST00000504430 SSTR3P32745 418 aaPredicted RBP7.58□□□□□ -1.2
NIPBL-204ENST00000504430 ZNF662Q6ZS27 426 aa7.58□□□□□ -1.2
NIPBL-204ENST00000504430 HIC1Q14526 733 aa7.58□□□□□ -1.2
NIPBL-204ENST00000504430 NOM1Q5C9Z4 860 aaKnown RBP7.58□□□□□ -1.2
NIPBL-204ENST00000504430 MYSM1Q5VVJ2 828 aa7.58□□□□□ -1.2
NIPBL-204ENST00000504430 NEFLP07196 543 aa7.57□□□□□ -1.2
NIPBL-204ENST00000504430 HDGFL1Q5TGJ6 251 aa7.57□□□□□ -1.2
NIPBL-204ENST00000504430 CSPP1Q1MSJ5 1256 aa7.57□□□□□ -1.2
NIPBL-204ENST00000504430 TXNDC2Q86VQ3 553 aa7.57□□□□□ -1.2
NIPBL-204ENST00000504430 CSB-PGBD3P0DP91 1061 aa7.57□□□□□ -1.2
NIPBL-204ENST00000504430 SCNN1AP37088 669 aa7.55□□□□□ -1.2
NIPBL-204ENST00000504430 SRPK2P78362 688 aaKnown RBP7.55□□□□□ -1.2
NIPBL-204ENST00000504430 SPATA32Q96LK8 384 aa7.55□□□□□ -1.2
NIPBL-204ENST00000504430 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP7.55□□□□□ -1.25e-8■■■■□ 20.2
NIPBL-204ENST00000504430 UPF1Q92900 1129 aaKnown RBP eCLIP7.55□□□□□ -1.2
NIPBL-204ENST00000504430 FARP1Q9Y4F1 1045 aaPredicted RBP7.55□□□□□ -1.2
NIPBL-204ENST00000504430 SOX12O15370 315 aa7.54□□□□□ -1.2
NIPBL-204ENST00000504430 TBC1D12O60347 775 aa7.54□□□□□ -1.2
NIPBL-204ENST00000504430 LIMD1Q9UGP4 676 aa7.54□□□□□ -1.2
NIPBL-204ENST00000504430 TAGLNQ01995 201 aaKnown RBP7.54□□□□□ -1.2
NIPBL-204ENST00000504430 CC2D2BQ6DHV5 1058 aa7.53□□□□□ -1.2
NIPBL-204ENST00000504430 TMEM88BA6NKF7 163 aa7.53□□□□□ -1.2
NIPBL-204ENST00000504430 PRDM10Q9NQV6 1147 aa7.53□□□□□ -1.2
NIPBL-204ENST00000504430 CDHR5Q9HBB8 845 aa7.53□□□□□ -1.2
NIPBL-204ENST00000504430 CCDC61Q9Y6R9 512 aa7.53□□□□□ -1.2
NIPBL-204ENST00000504430 PTGDRQ13258 359 aa7.52□□□□□ -1.21
NIPBL-204ENST00000504430 VRTNQ9H8Y1 702 aa7.52□□□□□ -1.21
NIPBL-204ENST00000504430 GPHNQ9NQX3 736 aaPredicted RBP7.52□□□□□ -1.21
NIPBL-204ENST00000504430 MAP3K13O43283 966 aa7.52□□□□□ -1.21
NIPBL-204ENST00000504430 FCHSD2O94868 740 aa7.52□□□□□ -1.21
NIPBL-204ENST00000504430 LMOD1P29536 600 aaPredicted RBP7.52□□□□□ -1.21
NIPBL-204ENST00000504430 SPDYE1Q8NFV5 336 aaPredicted RBP7.52□□□□□ -1.21
NIPBL-204ENST00000504430 CLK2P49760 499 aaKnown RBP7.51□□□□□ -1.21
NIPBL-204ENST00000504430 RBM47A0AV96 593 aaKnown RBP7.51□□□□□ -1.21
NIPBL-204ENST00000504430 ZNF16P17020 682 aaPredicted RBP7.51□□□□□ -1.21
NIPBL-204ENST00000504430 GIMAP6Q6P9H5 292 aa7.51□□□□□ -1.21
NIPBL-204ENST00000504430 GPCPD1Q9NPB8 672 aa7.51□□□□□ -1.21
NIPBL-204ENST00000504430 TMUB1Q9BVT8 246 aa7.5□□□□□ -1.21
NIPBL-204ENST00000504430 CLSTN1O94985 981 aa7.5□□□□□ -1.21
NIPBL-204ENST00000504430 FGD1P98174 961 aa7.5□□□□□ -1.21
NIPBL-204ENST00000504430 GIPC2Q8TF65 315 aa7.5□□□□□ -1.21
NIPBL-204ENST00000504430 MARCH6O60337 910 aa7.49□□□□□ -1.21
NIPBL-204ENST00000504430 NOL8Q76FK4 1167 aaKnown RBP7.49□□□□□ -1.21
NIPBL-204ENST00000504430 USTQ9Y2C2 406 aa7.49□□□□□ -1.21
NIPBL-204ENST00000504430 QPCTQ16769 361 aa7.49□□□□□ -1.21
NIPBL-204ENST00000504430 ZNF579Q8NAF0 562 aaKnown RBP7.49□□□□□ -1.21
NIPBL-204ENST00000504430 LOC102724159A0A0B4J2E5 919 aa7.48□□□□□ -1.21
NIPBL-204ENST00000504430 TCF3P15923 654 aa7.48□□□□□ -1.21
NIPBL-204ENST00000504430 PWP2Q15269 919 aaKnown RBP7.48□□□□□ -1.21
NIPBL-204ENST00000504430 PPP1R12CQ9BZL4 782 aa7.48□□□□□ -1.21
NIPBL-204ENST00000504430 PALM3A6NDB9 673 aaPredicted RBP7.48□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms