RNA–Protein interactions for RNA: ENST00000504131.6

CLCN3-204, Transcript of chloride voltage-gated channel 3, humanhuman

TSL 5 BASIC

Gene CLCN3, Length 5,592 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3-204ENST00000504131 SCRIBQ14160 1630 aa7.83□□□□□ -1.16
CLCN3-204ENST00000504131 PPP4R3BQ5MIZ7 849 aa7.83□□□□□ -1.16
CLCN3-204ENST00000504131 MIER1Q8N108 512 aa7.83□□□□□ -1.16
CLCN3-204ENST00000504131 SETSIPP0DME0 302 aa7.83□□□□□ -1.16
CLCN3-204ENST00000504131 HDAC1Q13547 482 aaPredicted RBP7.82□□□□□ -1.16
CLCN3-204ENST00000504131 H0YHG0 523 aa7.82□□□□□ -1.16
CLCN3-204ENST00000504131 SARNPP82979 210 aaKnown RBP7.82□□□□□ -1.16
CLCN3-204ENST00000504131 NOM1Q5C9Z4 860 aaKnown RBP7.81□□□□□ -1.16
CLCN3-204ENST00000504131 PPP6R1Q9UPN7 881 aa7.81□□□□□ -1.16
CLCN3-204ENST00000504131 HSCBQ8IWL3 235 aa7.81□□□□□ -1.16
CLCN3-204ENST00000504131 HTATSF1O43719 755 aaKnown RBP7.81□□□□□ -1.16
CLCN3-204ENST00000504131 CCDC181Q5TID7 509 aa7.8□□□□□ -1.16
CLCN3-204ENST00000504131 KCNJ4P48050 445 aa7.8□□□□□ -1.16
CLCN3-204ENST00000504131 SMAP1Q8IYB5 467 aaPredicted RBP7.8□□□□□ -1.16
CLCN3-204ENST00000504131 HNRNPUL2Q1KMD3 747 aaKnown RBP7.8□□□□□ -1.16
CLCN3-204ENST00000504131 CHMP3Q9Y3E7 222 aa7.8□□□□□ -1.16
CLCN3-204ENST00000504131 CCP110O43303 1012 aa7.8□□□□□ -1.16
CLCN3-204ENST00000504131 IPO9Q96P70 1041 aaKnown RBP7.8□□□□□ -1.16
CLCN3-204ENST00000504131 DEF6Q9H4E7 631 aa7.8□□□□□ -1.16
CLCN3-204ENST00000504131 SH3BP5O60239 455 aa7.79□□□□□ -1.16
CLCN3-204ENST00000504131 LETM1O95202 739 aaPredicted RBP7.79□□□□□ -1.16
CLCN3-204ENST00000504131 WWC3Q9ULE0 1092 aa7.78□□□□□ -1.16
CLCN3-204ENST00000504131 LIG1P18858 919 aa7.78□□□□□ -1.16
CLCN3-204ENST00000504131 GRIPAP1Q4V328 841 aa7.78□□□□□ -1.16
CLCN3-204ENST00000504131 BECN1Q14457 450 aa7.77□□□□□ -1.17
CLCN3-204ENST00000504131 TTC36A6NLP5 189 aa7.77□□□□□ -1.17
CLCN3-204ENST00000504131 PDZRN4Q6ZMN7 1036 aaPredicted RBP7.77□□□□□ -1.17
CLCN3-204ENST00000504131 MNS1Q8NEH6 495 aa7.77□□□□□ -1.17
CLCN3-204ENST00000504131 TPM3P06753 285 aa7.76□□□□□ -1.17
CLCN3-204ENST00000504131 CCDC34Q96HJ3 373 aa7.76□□□□□ -1.17
CLCN3-204ENST00000504131 PAF1Q8N7H5 531 aa7.76□□□□□ -1.17
CLCN3-204ENST00000504131 TRIM6-TRIM34B2RNG4 842 aa7.76□□□□□ -1.17
CLCN3-204ENST00000504131 DHX16O60231 1041 aaKnown RBP7.76□□□□□ -1.17
CLCN3-204ENST00000504131 TRIM34Q9BYJ4 488 aa7.76□□□□□ -1.17
CLCN3-204ENST00000504131 FRMD4BQ9Y2L6 1034 aa7.76□□□□□ -1.17
CLCN3-204ENST00000504131 NBPF6Q5VWK0 638 aa7.76□□□□□ -1.17
CLCN3-204ENST00000504131 NBPF5PQ86XG9 351 aaPredicted RBP7.76□□□□□ -1.17
CLCN3-204ENST00000504131 NBPF4Q96M43 638 aa7.76□□□□□ -1.17
CLCN3-204ENST00000504131 CWC15Q9P013 229 aaKnown RBP7.76□□□□□ -1.17
CLCN3-204ENST00000504131 SMARCA5O60264 1052 aaPredicted RBP7.75□□□□□ -1.17
CLCN3-204ENST00000504131 CSB-PGBD3P0DP91 1061 aa7.75□□□□□ -1.17
CLCN3-204ENST00000504131 LRCH2Q5VUJ6 765 aa7.75□□□□□ -1.17
CLCN3-204ENST00000504131 EXOC8Q8IYI6 725 aa7.75□□□□□ -1.17
CLCN3-204ENST00000504131 KIF4AO95239 1232 aa7.75□□□□□ -1.17
CLCN3-204ENST00000504131 PHF23Q9BUL5 403 aaPredicted RBP7.75□□□□□ -1.17
CLCN3-204ENST00000504131 CEP120Q8N960 986 aa7.75□□□□□ -1.17
CLCN3-204ENST00000504131 MYCBPQ99417 103 aaPredicted RBP7.75□□□□□ -1.17
CLCN3-204ENST00000504131 PEX14O75381 377 aa7.74□□□□□ -1.17
CLCN3-204ENST00000504131 CCER2I3L3R5 266 aa7.74□□□□□ -1.17
CLCN3-204ENST00000504131 SH3BGRP55822 239 aaPredicted RBP7.74□□□□□ -1.17
CLCN3-204ENST00000504131 CC2D2BQ6DHV5 1058 aa7.74□□□□□ -1.17
CLCN3-204ENST00000504131 ZCRB1Q8TBF4 217 aaKnown RBP7.74□□□□□ -1.17
CLCN3-204ENST00000504131 DZIP1Q86YF9 867 aaKnown RBP7.74□□□□□ -1.17
CLCN3-204ENST00000504131 RNF216Q9NWF9 866 aaPredicted RBP7.74□□□□□ -1.17
CLCN3-204ENST00000504131 SPTY2D1Q68D10 685 aaPredicted RBP7.74□□□□□ -1.17
CLCN3-204ENST00000504131 RGS22Q8NE09 1264 aa7.73□□□□□ -1.17
CLCN3-204ENST00000504131 ZNF830Q96NB3 372 aaPredicted RBP7.73□□□□□ -1.17
CLCN3-204ENST00000504131 MFAP1P55081 439 aaKnown RBP7.73□□□□□ -1.17
CLCN3-204ENST00000504131 GOLGA6L2Q8N9W4 650 aaPredicted RBP7.73□□□□□ -1.17
CLCN3-204ENST00000504131 ERCC6Q03468 1493 aa7.73□□□□□ -1.17
CLCN3-204ENST00000504131 RINLQ6ZS11 566 aa7.73□□□□□ -1.17
CLCN3-204ENST00000504131 KIF3AQ9Y496 699 aa7.73□□□□□ -1.17
CLCN3-204ENST00000504131 MSH5O43196 834 aa7.73□□□□□ -1.17
CLCN3-204ENST00000504131 GTPBP4Q9BZE4 634 aaKnown RBP7.73□□□□□ -1.17
CLCN3-204ENST00000504131 UTP3Q9NQZ2 479 aaKnown RBP eCLIP7.73□□□□□ -1.172e-6■■■■■ 41.9
CLCN3-204ENST00000504131 HIRIP3Q9BW71 556 aaPredicted RBP7.73□□□□□ -1.17
CLCN3-204ENST00000504131 EIF4G1Q04637 1599 aaKnown RBP7.72□□□□□ -1.17
CLCN3-204ENST00000504131 VGFO15240 615 aaPredicted RBP7.72□□□□□ -1.17
CLCN3-204ENST00000504131 ZNF500O60304 480 aaPredicted RBP7.72□□□□□ -1.17
CLCN3-204ENST00000504131 PIAS4Q8N2W9 510 aaPredicted RBP7.72□□□□□ -1.17
CLCN3-204ENST00000504131 CPSF2Q9P2I0 782 aaKnown RBP7.72□□□□□ -1.17
CLCN3-204ENST00000504131 SPRYD3Q8NCJ5 442 aa7.71□□□□□ -1.17
CLCN3-204ENST00000504131 TIGD1Q96MW7 591 aa7.71□□□□□ -1.17
CLCN3-204ENST00000504131 PDILTQ8N807 584 aa7.71□□□□□ -1.17
CLCN3-204ENST00000504131 CFAP53Q96M91 514 aa7.71□□□□□ -1.17
CLCN3-204ENST00000504131 KCNG1Q9UIX4 513 aa7.71□□□□□ -1.17
CLCN3-204ENST00000504131 KIF20AO95235 890 aa7.71□□□□□ -1.18
CLCN3-204ENST00000504131 RDXP35241 583 aaKnown RBP7.71□□□□□ -1.18
CLCN3-204ENST00000504131 RBM27Q9P2N5 1060 aaKnown RBP7.71□□□□□ -1.18
CLCN3-204ENST00000504131 ANKRD62A6NC57 917 aa7.71□□□□□ -1.18
CLCN3-204ENST00000504131 CALCOCO1Q9P1Z2 691 aa7.71□□□□□ -1.18
CLCN3-204ENST00000504131 MAFGO15525 162 aa7.7□□□□□ -1.18
CLCN3-204ENST00000504131 GPS2Q13227 327 aa7.7□□□□□ -1.18
CLCN3-204ENST00000504131 NBPF1Q3BBV0 1214 aa7.7□□□□□ -1.18
CLCN3-204ENST00000504131 ZNF692Q9BU19 519 aaPredicted RBP7.7□□□□□ -1.18
CLCN3-204ENST00000504131 MARCH6O60337 910 aa7.7□□□□□ -1.18
CLCN3-204ENST00000504131 FRAT1Q92837 279 aaPredicted RBP7.7□□□□□ -1.18
CLCN3-204ENST00000504131 HSP90AB2PQ58FF8 381 aa7.69□□□□□ -1.18
CLCN3-204ENST00000504131 NBPF11Q86T75 865 aa7.69□□□□□ -1.18
CLCN3-204ENST00000504131 TMTC2Q8N394 836 aa7.69□□□□□ -1.18
CLCN3-204ENST00000504131 ACRBPQ8NEB7 543 aa7.69□□□□□ -1.18
CLCN3-204ENST00000504131 GIMAP7Q8NHV1 300 aa7.69□□□□□ -1.18
CLCN3-204ENST00000504131 NECTIN2Q92692 538 aa7.69□□□□□ -1.18
CLCN3-204ENST00000504131 CSPP1Q1MSJ5 1256 aa7.69□□□□□ -1.18
CLCN3-204ENST00000504131 CDCA8Q53HL2 280 aa7.69□□□□□ -1.18
CLCN3-204ENST00000504131 RPAINQ86UA6 219 aa7.69□□□□□ -1.18
CLCN3-204ENST00000504131 R3HCC1Q9Y3T6 440 aaKnown RBP7.69□□□□□ -1.18
CLCN3-204ENST00000504131 MFSD4BQ5TF39 518 aa7.68□□□□□ -1.18
CLCN3-204ENST00000504131 CIZ1Q9ULV3 898 aaPredicted RBP7.68□□□□□ -1.18
CLCN3-204ENST00000504131 WDHD1O75717 1129 aaPredicted RBP7.68□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms