RNA–Protein interactions for RNA: ENST00000502717.5

HMGXB3-201, Transcript of HMG-box containing 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGXB3, Length 4,974 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGXB3-201ENST00000502717 POGKQ9P215 609 aa21.68■■□□□ 1.06
HMGXB3-201ENST00000502717 U2SURPO15042 1029 aaKnown RBP21.68■■□□□ 1.06
HMGXB3-201ENST00000502717 CASKIN1Q8WXD9 1431 aa21.68■■□□□ 1.06
HMGXB3-201ENST00000502717 CGNL1Q0VF96 1302 aa21.68■■□□□ 1.06
HMGXB3-201ENST00000502717 HNRNPMP52272 730 aaKnown RBP eCLIP21.68■■□□□ 1.06
HMGXB3-201ENST00000502717 PEG3Q9GZU2 1588 aa21.67■■□□□ 1.06
HMGXB3-201ENST00000502717 BRPF3Q9ULD4 1205 aa21.67■■□□□ 1.06
HMGXB3-201ENST00000502717 SMG6Q86US8 1419 aaKnown RBP21.66■■□□□ 1.06
HMGXB3-201ENST00000502717 BACH2Q9BYV9 841 aa21.65■■□□□ 1.06
HMGXB3-201ENST00000502717 CDK11BP21127 795 aaKnown RBP21.65■■□□□ 1.06
HMGXB3-201ENST00000502717 KIAA2012Q0VF49 1180 aa21.65■■□□□ 1.06
HMGXB3-201ENST00000502717 PTPRGP23470 1445 aa21.65■■□□□ 1.06
HMGXB3-201ENST00000502717 SKOR2Q2VWA4 1001 aaPredicted RBP21.65■■□□□ 1.06
HMGXB3-201ENST00000502717 AQRO60306 1485 aaKnown RBP eCLIP21.64■■□□□ 1.056e-7■■■■■ 36.5
HMGXB3-201ENST00000502717 NESP48681 1621 aa21.64■■□□□ 1.05
HMGXB3-201ENST00000502717 CALD1Q05682 793 aaKnown RBP21.64■■□□□ 1.05
HMGXB3-201ENST00000502717 OSCARQ8IYS5 282 aa21.64■■□□□ 1.05
HMGXB3-201ENST00000502717 TOPBP1Q92547 1522 aa21.63■■□□□ 1.05
HMGXB3-201ENST00000502717 MYOM3Q5VTT5 1437 aa21.63■■□□□ 1.05
HMGXB3-201ENST00000502717 BRD4O60885 1362 aaPredicted RBP21.63■■□□□ 1.05
HMGXB3-201ENST00000502717 AKNAQ7Z591 1439 aa21.63■■□□□ 1.05
HMGXB3-201ENST00000502717 FAM43AQ8N2R8 423 aa21.63■■□□□ 1.05
HMGXB3-201ENST00000502717 TPRNQ4KMQ1 711 aa21.62■■□□□ 1.05
HMGXB3-201ENST00000502717 ITPRIPQ8IWB1 547 aa21.62■■□□□ 1.05
HMGXB3-201ENST00000502717 PANK3Q9H999 370 aa21.61■■□□□ 1.05
HMGXB3-201ENST00000502717 GRIN2BQ13224 1484 aa21.61■■□□□ 1.05
HMGXB3-201ENST00000502717 CCDC146Q8IYE0 955 aa21.61■■□□□ 1.05
HMGXB3-201ENST00000502717 E9PSI1 815 aa21.6■■□□□ 1.05
HMGXB3-201ENST00000502717 POLA1P09884 1462 aaPredicted RBP21.6■■□□□ 1.05
HMGXB3-201ENST00000502717 MCCP23508 829 aa21.6■■□□□ 1.05
HMGXB3-201ENST00000502717 FYCO1Q9BQS8 1478 aa21.59■■□□□ 1.05
HMGXB3-201ENST00000502717 ZRSR1Q15695 479 aaKnown RBP21.59■■□□□ 1.05
HMGXB3-201ENST00000502717 CHMP5Q9NZZ3 219 aa21.59■■□□□ 1.05
HMGXB3-201ENST00000502717 SYAP1Q96A49 352 aaPredicted RBP21.58■■□□□ 1.05
HMGXB3-201ENST00000502717 EFCAB5A4FU69 1503 aa21.57■■□□□ 1.04
HMGXB3-201ENST00000502717 CLUAP1Q96AJ1 413 aa21.57■■□□□ 1.04
HMGXB3-201ENST00000502717 GGT6Q6P531 493 aa21.56■■□□□ 1.04
HMGXB3-201ENST00000502717 SPAG9O60271 1321 aaKnown RBP21.56■■□□□ 1.04
HMGXB3-201ENST00000502717 NGEFQ8N5V2 710 aa21.56■■□□□ 1.04
HMGXB3-201ENST00000502717 CYB5RLQ6IPT4 315 aa21.54■■□□□ 1.04
HMGXB3-201ENST00000502717 SMC4Q9NTJ3 1288 aa21.54■■□□□ 1.04
HMGXB3-201ENST00000502717 GOLGA6L6A8MZA4 724 aa21.54■■□□□ 1.04
HMGXB3-201ENST00000502717 U2AF1L5P0DN76 240 aaPredicted RBP21.54■■□□□ 1.04
HMGXB3-201ENST00000502717 U2AF1Q01081 240 aaKnown RBP eCLIP21.54■■□□□ 1.047e-7■□□□□ 9.7
HMGXB3-201ENST00000502717 DNMBPQ6XZF7 1577 aa21.54■■□□□ 1.04
HMGXB3-201ENST00000502717 EIF3AQ14152 1382 aaKnown RBP21.54■■□□□ 1.04
HMGXB3-201ENST00000502717 FRAT2O75474 233 aaPredicted RBP21.53■■□□□ 1.04
HMGXB3-201ENST00000502717 CCDC184Q52MB2 194 aa21.53■■□□□ 1.04
HMGXB3-201ENST00000502717 NPHP1O15259 732 aa21.52■■□□□ 1.04
HMGXB3-201ENST00000502717 ARID3AQ99856 593 aa21.51■■□□□ 1.03
HMGXB3-201ENST00000502717 NCOA2Q15596 1464 aa21.51■■□□□ 1.03
HMGXB3-201ENST00000502717 COG6Q9Y2V7 657 aa21.51■■□□□ 1.03
HMGXB3-201ENST00000502717 MRE11P49959 708 aa21.51■■□□□ 1.03
HMGXB3-201ENST00000502717 MRC2Q9UBG0 1479 aa21.51■■□□□ 1.03
HMGXB3-201ENST00000502717 KIF3BO15066 747 aa21.5■■□□□ 1.03
HMGXB3-201ENST00000502717 DDX49Q9Y6V7 483 aaKnown RBP21.5■■□□□ 1.03
HMGXB3-201ENST00000502717 PNISRQ8TF01 805 aaKnown RBP21.5■■□□□ 1.03
HMGXB3-201ENST00000502717 NRDCO43847 1150 aa21.5■■□□□ 1.03
HMGXB3-201ENST00000502717 UNC13AQ9UPW8 1703 aa21.49■■□□□ 1.03
HMGXB3-201ENST00000502717 GOLGA6L4A6NEF3 574 aa21.49■■□□□ 1.03
HMGXB3-201ENST00000502717 MIA2Q96PC5 1412 aa21.48■■□□□ 1.03
HMGXB3-201ENST00000502717 HFM1A2PYH4 1435 aa21.48■■□□□ 1.03
HMGXB3-201ENST00000502717 AAMPQ13685 434 aa21.48■■□□□ 1.03
HMGXB3-201ENST00000502717 FOXD4L1Q9NU39 408 aa21.47■■□□□ 1.03
HMGXB3-201ENST00000502717 TIAM1Q13009 1591 aa21.46■■□□□ 1.03
HMGXB3-201ENST00000502717 IFT140Q96RY7 1462 aa21.46■■□□□ 1.03
HMGXB3-201ENST00000502717 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.46■■□□□ 1.03
HMGXB3-201ENST00000502717 CCDC144AA2RUR9 1427 aa21.45■■□□□ 1.02
HMGXB3-201ENST00000502717 APAF1O14727 1248 aa21.45■■□□□ 1.02
HMGXB3-201ENST00000502717 DRC7Q8IY82 874 aa21.44■■□□□ 1.02
HMGXB3-201ENST00000502717 ABCA10Q8WWZ4 1543 aa21.44■■□□□ 1.02
HMGXB3-201ENST00000502717 PDZRN4Q6ZMN7 1036 aaPredicted RBP21.44■■□□□ 1.02
HMGXB3-201ENST00000502717 CDCA7LQ96GN5 454 aa21.44■■□□□ 1.02
HMGXB3-201ENST00000502717 ZKSCAN2Q63HK3 967 aa21.43■■□□□ 1.02
HMGXB3-201ENST00000502717 ST18O60284 1047 aa21.41■■□□□ 1.02
HMGXB3-201ENST00000502717 PHF14O94880 888 aa21.41■■□□□ 1.02
HMGXB3-201ENST00000502717 ZNF644Q9H582 1327 aaPredicted RBP21.41■■□□□ 1.02
HMGXB3-201ENST00000502717 EID1Q9Y6B2 187 aa21.41■■□□□ 1.02
HMGXB3-201ENST00000502717 PKNOX2Q96KN3 472 aa21.4■■□□□ 1.02
HMGXB3-201ENST00000502717 CSPP1Q1MSJ5 1256 aa21.38■■□□□ 1.01
HMGXB3-201ENST00000502717 LAMC3Q9Y6N6 1575 aa21.38■■□□□ 1.01
HMGXB3-201ENST00000502717 C22orf23Q9BZE7 217 aa21.38■■□□□ 1.01
HMGXB3-201ENST00000502717 NBPF8Q3BBV2 869 aa21.38■■□□□ 1.01
HMGXB3-201ENST00000502717 WASHC2CQ9Y4E1 1318 aa21.38■■□□□ 1.01
HMGXB3-201ENST00000502717 TRAK2O60296 914 aa21.37■■□□□ 1.01
HMGXB3-201ENST00000502717 KCNJ4P48050 445 aa21.37■■□□□ 1.01
HMGXB3-201ENST00000502717 TPM2P07951 284 aa21.37■■□□□ 1.01
HMGXB3-201ENST00000502717 SRPK2P78362 688 aaKnown RBP21.36■■□□□ 1.01
HMGXB3-201ENST00000502717 BCL2L13Q9BXK5 485 aa21.36■■□□□ 1.01
HMGXB3-201ENST00000502717 PRDM2Q13029 1718 aa21.36■■□□□ 1.01
HMGXB3-201ENST00000502717 MAP7D2Q96T17 732 aa21.36■■□□□ 1.01
HMGXB3-201ENST00000502717 RRP7AQ9Y3A4 280 aaKnown RBP21.35■■□□□ 1.01
HMGXB3-201ENST00000502717 APBB1O00213 710 aa21.35■■□□□ 1.01
HMGXB3-201ENST00000502717 FAM13BQ9NYF5 915 aa21.35■■□□□ 1.01
HMGXB3-201ENST00000502717 EHBP1L1Q8N3D4 1523 aa21.34■■□□□ 1.01
HMGXB3-201ENST00000502717 ISY1Q9ULR0 285 aaKnown RBP21.34■■□□□ 1.01
HMGXB3-201ENST00000502717 DDX19BQ9UMR2 479 aa21.34■■□□□ 1.01
HMGXB3-201ENST00000502717 ADAMTS8Q9UP79 889 aa21.33■■□□□ 1.01
HMGXB3-201ENST00000502717 OS9Q13438 667 aaPredicted RBP21.31■■□□□ 1
HMGXB3-201ENST00000502717 BIVM-ERCC5R4GMW8 1640 aa21.31■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms