RNA–Protein interactions for RNA: ENST00000498143.5

USP54-216, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 4,313 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-216ENST00000498143 KRT27Q7Z3Y8 459 aa7.15□□□□□ -1.27
USP54-216ENST00000498143 ATF5Q9Y2D1 282 aaPredicted RBP7.14□□□□□ -1.27
USP54-216ENST00000498143 ZNF219Q9P2Y4 722 aaPredicted RBP7.14□□□□□ -1.27
USP54-216ENST00000498143 UBE2Q2Q8WVN8 375 aa7.13□□□□□ -1.27
USP54-216ENST00000498143 STRN4Q9NRL3 753 aa7.13□□□□□ -1.27
USP54-216ENST00000498143 DNMBPQ6XZF7 1577 aa7.13□□□□□ -1.27
USP54-216ENST00000498143 NUTM2FA1L443 756 aa7.13□□□□□ -1.27
USP54-216ENST00000498143 PCDH10Q9P2E7 1040 aa7.13□□□□□ -1.27
USP54-216ENST00000498143 TRAPPC8Q9Y2L5 1435 aa7.12□□□□□ -1.27
USP54-216ENST00000498143 HMGB2P26583 209 aaKnown RBP7.12□□□□□ -1.27
USP54-216ENST00000498143 EN1Q05925 392 aaPredicted RBP7.12□□□□□ -1.27
USP54-216ENST00000498143 KANK1Q14678 1352 aa7.12□□□□□ -1.27
USP54-216ENST00000498143 CLIP1P30622 1438 aa7.12□□□□□ -1.27
USP54-216ENST00000498143 CACNA1GO43497 2377 aa7.12□□□□□ -1.27
USP54-216ENST00000498143 PDE4CQ08493 712 aa7.11□□□□□ -1.27
USP54-216ENST00000498143 ACIN1Q9UKV3 1341 aaKnown RBP7.11□□□□□ -1.27
USP54-216ENST00000498143 PLCB2Q00722 1185 aa7.11□□□□□ -1.27
USP54-216ENST00000498143 PKNOX2Q96KN3 472 aa7.11□□□□□ -1.27
USP54-216ENST00000498143 ZBTB4Q9P1Z0 1013 aaPredicted RBP7.11□□□□□ -1.27
USP54-216ENST00000498143 PSME1Q06323 249 aa7.1□□□□□ -1.27
USP54-216ENST00000498143 CFAP43Q8NDM7 1665 aa7.1□□□□□ -1.27
USP54-216ENST00000498143 FAM135AQ9P2D6 1515 aa7.1□□□□□ -1.27
USP54-216ENST00000498143 ESCO1Q5FWF5 840 aa7.1□□□□□ -1.27
USP54-216ENST00000498143 CNTLNQ9NXG0 1405 aa7.1□□□□□ -1.27
USP54-216ENST00000498143 ABCC2Q92887 1545 aa7.1□□□□□ -1.27
USP54-216ENST00000498143 ZNF784Q8NCA9 323 aaPredicted RBP7.1□□□□□ -1.27
USP54-216ENST00000498143 CHD1O14646 1710 aa7.09□□□□□ -1.27
USP54-216ENST00000498143 ABCF1Q8NE71 845 aaKnown RBP eCLIP7.09□□□□□ -1.27
USP54-216ENST00000498143 GOLGA3Q08378 1498 aa7.09□□□□□ -1.27
USP54-216ENST00000498143 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP7.09□□□□□ -1.28
USP54-216ENST00000498143 CEP170Q5SW79 1584 aa7.09□□□□□ -1.28
USP54-216ENST00000498143 PDIA4P13667 645 aaKnown RBP7.08□□□□□ -1.28
USP54-216ENST00000498143 PTMSP20962 102 aa7.08□□□□□ -1.28
USP54-216ENST00000498143 NBR1Q14596 966 aa7.08□□□□□ -1.28
USP54-216ENST00000498143 CLEC11AQ9Y240 323 aa7.08□□□□□ -1.28
USP54-216ENST00000498143 ZBTB7AO95365 584 aa7.08□□□□□ -1.28
USP54-216ENST00000498143 SEPT12Q8IYM1 358 aa7.08□□□□□ -1.28
USP54-216ENST00000498143 PRDM11Q9NQV5 511 aa7.08□□□□□ -1.28
USP54-216ENST00000498143 WDR97A6NE52 1622 aa7.07□□□□□ -1.28
USP54-216ENST00000498143 APLP1P51693 650 aa7.07□□□□□ -1.28
USP54-216ENST00000498143 MLLT1Q03111 559 aaPredicted RBP7.07□□□□□ -1.28
USP54-216ENST00000498143 SYTL4Q96C24 671 aaPredicted RBP7.07□□□□□ -1.28
USP54-216ENST00000498143 C19orf44Q9H6X5 657 aa7.07□□□□□ -1.28
USP54-216ENST00000498143 TNRQ92752 1358 aa7.07□□□□□ -1.28
USP54-216ENST00000498143 KCNQ2O43526 872 aa7.07□□□□□ -1.28
USP54-216ENST00000498143 ZBTB22O15209 634 aa7.06□□□□□ -1.28
USP54-216ENST00000498143 TMX4Q9H1E5 349 aaPredicted RBP7.06□□□□□ -1.28
USP54-216ENST00000498143 CCDC88BA6NC98 1476 aa7.05□□□□□ -1.28
USP54-216ENST00000498143 KIAA0586Q9BVV6 1533 aa7.05□□□□□ -1.28
USP54-216ENST00000498143 ARID3AQ99856 593 aa7.05□□□□□ -1.28
USP54-216ENST00000498143 ZMYM3Q14202 1370 aa7.04□□□□□ -1.28
USP54-216ENST00000498143 IL27Q8NEV9 243 aa7.04□□□□□ -1.28
USP54-216ENST00000498143 POGKQ9P215 609 aa7.04□□□□□ -1.28
USP54-216ENST00000498143 NCLP19338 710 aaKnown RBP7.04□□□□□ -1.28
USP54-216ENST00000498143 TRIM37O94972 964 aa7.04□□□□□ -1.28
USP54-216ENST00000498143 FAM98CQ17RN3 349 aaKnown RBP7.04□□□□□ -1.28
USP54-216ENST00000498143 HSPA6P17066 643 aa7.03□□□□□ -1.28
USP54-216ENST00000498143 KCNA6P17658 529 aa7.03□□□□□ -1.28
USP54-216ENST00000498143 FAM196AQ6ZSG2 479 aa7.03□□□□□ -1.28
USP54-216ENST00000498143 NGDNQ8NEJ9 315 aaKnown RBP7.03□□□□□ -1.28
USP54-216ENST00000498143 AATKQ6ZMQ8 1374 aa7.03□□□□□ -1.28
USP54-216ENST00000498143 ANP32EQ9BTT0 268 aa7.03□□□□□ -1.28
USP54-216ENST00000498143 FBXO3Q9UK99 471 aa7.03□□□□□ -1.28
USP54-216ENST00000498143 TMEM94Q12767 1356 aa7.02□□□□□ -1.29
USP54-216ENST00000498143 XPCQ01831 940 aaPredicted RBP7.02□□□□□ -1.29
USP54-216ENST00000498143 MAPK8IP2Q13387 824 aaPredicted RBP7.02□□□□□ -1.29
USP54-216ENST00000498143 FBXO31Q5XUX0 539 aaPredicted RBP7.02□□□□□ -1.29
USP54-216ENST00000498143 TRIM26Q12899 539 aaPredicted RBP7.02□□□□□ -1.29
USP54-216ENST00000498143 A0A0U1RQG5 324 aaPredicted RBP7.01□□□□□ -1.29
USP54-216ENST00000498143 ITGAEP38570 1179 aa7.01□□□□□ -1.29
USP54-216ENST00000498143 GJD4Q96KN9 370 aaPredicted RBP7.01□□□□□ -1.29
USP54-216ENST00000498143 HIRIP3Q9BW71 556 aaPredicted RBP7.01□□□□□ -1.29
USP54-216ENST00000498143 EPRSP07814 1512 aaKnown RBP7.01□□□□□ -1.29
USP54-216ENST00000498143 NAP1L5Q96NT1 182 aaPredicted RBP7□□□□□ -1.29
USP54-216ENST00000498143 CNKSR2Q8WXI2 1034 aa7□□□□□ -1.29
USP54-216ENST00000498143 C11orf95C9JLR9 678 aaPredicted RBP7□□□□□ -1.29
USP54-216ENST00000498143 TFCP2L1Q9NZI6 479 aa7□□□□□ -1.29
USP54-216ENST00000498143 ATP10AO60312 1499 aa6.99□□□□□ -1.29
USP54-216ENST00000498143 MED1Q15648 1581 aaPredicted RBP6.99□□□□□ -1.29
USP54-216ENST00000498143 MAPKBP1O60336 1514 aa6.99□□□□□ -1.29
USP54-216ENST00000498143 NPHP4O75161 1426 aaPredicted RBP6.99□□□□□ -1.29
USP54-216ENST00000498143 C9orf84Q5VXU9 1444 aa6.99□□□□□ -1.29
USP54-216ENST00000498143 PRELPP51888 382 aa6.99□□□□□ -1.29
USP54-216ENST00000498143 ARHGAP27Q6ZUM4 889 aa6.99□□□□□ -1.29
USP54-216ENST00000498143 STK26Q9P289 416 aa6.99□□□□□ -1.29
USP54-216ENST00000498143 TAF7LQ5H9L4 462 aa6.98□□□□□ -1.29
USP54-216ENST00000498143 KIAA0556O60303 1618 aa6.98□□□□□ -1.29
USP54-216ENST00000498143 MTUS2Q5JR59 1369 aa6.98□□□□□ -1.29
USP54-216ENST00000498143 LRPPRCP42704 1394 aaKnown RBP6.97□□□□□ -1.29
USP54-216ENST00000498143 NPHP3Q7Z494 1330 aa6.97□□□□□ -1.29
USP54-216ENST00000498143 HSP90B1P14625 803 aaKnown RBP6.97□□□□□ -1.29
USP54-216ENST00000498143 GCC1Q96CN9 775 aa6.97□□□□□ -1.29
USP54-216ENST00000498143 FOXO3O43524 673 aa6.97□□□□□ -1.29
USP54-216ENST00000498143 NUP160Q12769 1436 aa6.97□□□□□ -1.29
USP54-216ENST00000498143 CCNB3Q8WWL7 1395 aa6.97□□□□□ -1.29
USP54-216ENST00000498143 SOX12O15370 315 aa6.97□□□□□ -1.29
USP54-216ENST00000498143 SRPK2P78362 688 aaKnown RBP6.97□□□□□ -1.29
USP54-216ENST00000498143 FAM50AQ14320 339 aaKnown RBP6.97□□□□□ -1.29
USP54-216ENST00000498143 NBPF15Q8N660 670 aa6.96□□□□□ -1.3
USP54-216ENST00000498143 SHANK2Q9UPX8 1470 aa6.96□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms