RNA–Protein interactions for RNA: ENST00000494672.1

CCDC66-222, Transcript of coiled-coil domain containing 66, human

TSL 4

Gene CCDC66, Length 577 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CCDC66-222	ENST00000494672	DDX12P	Q92771	950 aa		12.04	□□□□□ -0.48
CCDC66-222	ENST00000494672	PLCB2	Q00722	1185 aa		12.02	□□□□□ -0.49
CCDC66-222	ENST00000494672	ZBED2	Q9BTP6	218 aa		12.01	□□□□□ -0.49
CCDC66-222	ENST00000494672	PPP1R3G	B7ZBB8	358 aa		11.99	□□□□□ -0.49
CCDC66-222	ENST00000494672	C6orf132	Q5T0Z8	1188 aa		11.98	□□□□□ -0.49
CCDC66-222	ENST00000494672	RBM33	Q96EV2	1170 aa	Known RBP	11.98	□□□□□ -0.49
CCDC66-222	ENST00000494672	NBR1	Q14596	966 aa		11.96	□□□□□ -0.49
CCDC66-222	ENST00000494672	ARHGEF1	Q92888	912 aa	Known RBP	11.95	□□□□□ -0.5
CCDC66-222	ENST00000494672	GRXCR2	A6NFK2	248 aa		11.94	□□□□□ -0.5
CCDC66-222	ENST00000494672	BHMG1	C9JSJ3	638 aa	Predicted RBP	11.94	□□□□□ -0.5
CCDC66-222	ENST00000494672	COL9A1	P20849	921 aa		11.94	□□□□□ -0.5
CCDC66-222	ENST00000494672	HCST	Q9UBK5	93 aa		11.93	□□□□□ -0.5
CCDC66-222	ENST00000494672	GOLGA8CP	A6NN73	597 aa		11.92	□□□□□ -0.5
CCDC66-222	ENST00000494672	MAP3K7	O43318	606 aa		11.92	□□□□□ -0.5
CCDC66-222	ENST00000494672	EN1	Q05925	392 aa	Predicted RBP	11.92	□□□□□ -0.5
CCDC66-222	ENST00000494672	NBPF3	Q9H094	633 aa		11.92	□□□□□ -0.5
CCDC66-222	ENST00000494672	MRPL50	Q8N5N7	158 aa	Known RBP	11.91	□□□□□ -0.5
CCDC66-222	ENST00000494672	KCTD12	Q96CX2	325 aa	Known RBP	11.91	□□□□□ -0.5
CCDC66-222	ENST00000494672	RABGEF1	Q9UJ41	708 aa		11.91	□□□□□ -0.5
CCDC66-222	ENST00000494672	PROX2	Q3B8N5	592 aa		11.9	□□□□□ -0.5
CCDC66-222	ENST00000494672	ONECUT3	O60422	494 aa	Predicted RBP	11.89	□□□□□ -0.51
CCDC66-222	ENST00000494672	P3H3	Q8IVL6	736 aa		11.89	□□□□□ -0.51
CCDC66-222	ENST00000494672	KCNV2	Q8TDN2	545 aa		11.89	□□□□□ -0.51
CCDC66-222	ENST00000494672	HAP1	P54257	671 aa	Predicted RBP	11.87	□□□□□ -0.51
CCDC66-222	ENST00000494672	TSR1	Q2NL82	804 aa	Known RBP	11.85	□□□□□ -0.51
CCDC66-222	ENST00000494672	KIAA1468	Q9P260	1216 aa		11.85	□□□□□ -0.51
CCDC66-222	ENST00000494672	TRIM6-TRIM34	B2RNG4	842 aa		11.84	□□□□□ -0.51
CCDC66-222	ENST00000494672	OSBP	P22059	807 aa		11.84	□□□□□ -0.51
CCDC66-222	ENST00000494672	WNT2B	Q93097	391 aa		11.84	□□□□□ -0.51
CCDC66-222	ENST00000494672	LAPTM4B	Q86VI4	370 aa		11.83	□□□□□ -0.52
CCDC66-222	ENST00000494672	CERK	Q8TCT0	537 aa		11.83	□□□□□ -0.52
CCDC66-222	ENST00000494672	PRIM1	P49642	420 aa	Known RBP	11.81	□□□□□ -0.52
CCDC66-222	ENST00000494672	PACS2	Q86VP3	889 aa		11.81	□□□□□ -0.52
CCDC66-222	ENST00000494672	PTPN5	P54829	565 aa		11.8	□□□□□ -0.52
CCDC66-222	ENST00000494672	THSD4	Q6ZMP0	1018 aa		11.79	□□□□□ -0.52
CCDC66-222	ENST00000494672	PRSS12	P56730	875 aa		11.77	□□□□□ -0.53
CCDC66-222	ENST00000494672	ANKK1	Q8NFD2	765 aa		11.77	□□□□□ -0.53
CCDC66-222	ENST00000494672	CDCA7L	Q96GN5	454 aa		11.77	□□□□□ -0.53
CCDC66-222	ENST00000494672	MLLT3	P42568	568 aa	Predicted RBP	11.76	□□□□□ -0.53
CCDC66-222	ENST00000494672	TSKS	Q9UJT2	592 aa		11.76	□□□□□ -0.53
CCDC66-222	ENST00000494672	ZFR	Q96KR1	1074 aa	Known RBP	11.75	□□□□□ -0.53
CCDC66-222	ENST00000494672	SEPT9	Q9UHD8	586 aa	Predicted RBP	11.75	□□□□□ -0.53
CCDC66-222	ENST00000494672	FAM98C	Q17RN3	349 aa	Known RBP	11.74	□□□□□ -0.53
CCDC66-222	ENST00000494672	CDHR5	Q9HBB8	845 aa		11.74	□□□□□ -0.53
CCDC66-222	ENST00000494672	PLA2G2E	Q9NZK7	142 aa		11.72	□□□□□ -0.53
CCDC66-222	ENST00000494672	SOWAHB	A6NEL2	793 aa		11.7	□□□□□ -0.54
CCDC66-222	ENST00000494672	RBM27	Q9P2N5	1060 aa	Known RBP	11.7	□□□□□ -0.54
CCDC66-222	ENST00000494672	NBPF26	B4DH59	902 aa		11.69	□□□□□ -0.54
CCDC66-222	ENST00000494672	SEMA3E	O15041	775 aa		11.69	□□□□□ -0.54
CCDC66-222	ENST00000494672	NPDC1	Q9NQX5	325 aa	Predicted RBP	11.69	□□□□□ -0.54
CCDC66-222	ENST00000494672	KDM2A	Q9Y2K7	1162 aa		11.69	□□□□□ -0.54
CCDC66-222	ENST00000494672	VSIG10	Q8N0Z9	540 aa		11.68	□□□□□ -0.54
CCDC66-222	ENST00000494672	FAM198A	Q9UFP1	575 aa		11.68	□□□□□ -0.54
CCDC66-222	ENST00000494672	BCAM	P50895	628 aa		11.67	□□□□□ -0.54
CCDC66-222	ENST00000494672	TATDN2	Q93075	761 aa		11.67	□□□□□ -0.54
CCDC66-222	ENST00000494672	LRCH3	Q96II8	777 aa		11.66	□□□□□ -0.54
CCDC66-222	ENST00000494672	CDKN2AIP	Q9NXV6	580 aa	Predicted RBP	11.66	□□□□□ -0.54
CCDC66-222	ENST00000494672	PNMA3	Q9UL41	463 aa		11.66	□□□□□ -0.54
CCDC66-222	ENST00000494672	SMAP	O00193	183 aa		11.65	□□□□□ -0.54
CCDC66-222	ENST00000494672	SMYD5	Q6GMV2	418 aa		11.65	□□□□□ -0.54
CCDC66-222	ENST00000494672	NUTM2F	A1L443	756 aa		11.64	□□□□□ -0.55
CCDC66-222	ENST00000494672	HDGF	P51858	240 aa	Known RBP	11.63	□□□□□ -0.55
CCDC66-222	ENST00000494672	PADI6	Q6TGC4	694 aa		11.63	□□□□□ -0.55
CCDC66-222	ENST00000494672	NYAP1	Q6ZVC0	841 aa		11.63	□□□□□ -0.55
CCDC66-222	ENST00000494672	NUDT18	Q6ZVK8	323 aa		11.63	□□□□□ -0.55
CCDC66-222	ENST00000494672	TTC13	Q8NBP0	860 aa		11.63	□□□□□ -0.55
CCDC66-222	ENST00000494672	TESPA1	A2RU30	521 aa	Predicted RBP	11.61	□□□□□ -0.55
CCDC66-222	ENST00000494672	PTGDR	Q13258	359 aa		11.61	□□□□□ -0.55
CCDC66-222	ENST00000494672	TSR3	Q9UJK0	312 aa	Known RBP	11.61	□□□□□ -0.55
CCDC66-222	ENST00000494672	C3orf80	F5H4A9	247 aa		11.6	□□□□□ -0.55
CCDC66-222	ENST00000494672	WBP1L	Q9NX94	342 aa		11.6	□□□□□ -0.55
CCDC66-222	ENST00000494672	HPS5	Q9UPZ3	1129 aa		11.6	□□□□□ -0.55
CCDC66-222	ENST00000494672	SAMD7	Q7Z3H4	446 aa		11.59	□□□□□ -0.55
CCDC66-222	ENST00000494672	FCHSD2	O94868	740 aa		11.57	□□□□□ -0.56
CCDC66-222	ENST00000494672	PPP4C	P60510	307 aa		11.57	□□□□□ -0.56
CCDC66-222	ENST00000494672	IFFO2	Q5TF58	517 aa		11.56	□□□□□ -0.56
CCDC66-222	ENST00000494672	EYA1	Q99502	592 aa		11.53	□□□□□ -0.56
CCDC66-222	ENST00000494672	SLC4A3	P48751	1232 aa		11.52	□□□□□ -0.57
CCDC66-222	ENST00000494672	RBM26	Q5T8P6	1007 aa	Known RBP	11.52	□□□□□ -0.57
CCDC66-222	ENST00000494672	RBM46	Q8TBY0	533 aa	Known RBP	11.51	□□□□□ -0.57
CCDC66-222	ENST00000494672	RNF40	O75150	1001 aa		11.5	□□□□□ -0.57
CCDC66-222	ENST00000494672	ITGBL1	O95965	494 aa	Predicted RBP	11.5	□□□□□ -0.57
CCDC66-222	ENST00000494672	NECTIN2	Q92692	538 aa		11.5	□□□□□ -0.57
CCDC66-222	ENST00000494672	HIC1	Q14526	733 aa		11.49	□□□□□ -0.57
CCDC66-222	ENST00000494672	SWT1	Q5T5J6	900 aa	Known RBP	11.49	□□□□□ -0.57
CCDC66-222	ENST00000494672	SLF2	Q8IX21	1173 aa		11.48	□□□□□ -0.57
CCDC66-222	ENST00000494672	ADGRG1	Q9Y653	693 aa		11.48	□□□□□ -0.57
CCDC66-222	ENST00000494672	KCNC4	Q03721	635 aa		11.47	□□□□□ -0.57
CCDC66-222	ENST00000494672	TULP1	O00294	542 aa	Predicted RBP	11.46	□□□□□ -0.57
CCDC66-222	ENST00000494672	DNAJB2	P25686	324 aa		11.46	□□□□□ -0.57
CCDC66-222	ENST00000494672	OAT	P04181	439 aa		11.44	□□□□□ -0.58
CCDC66-222	ENST00000494672	FAM161A	Q3B820	660 aa		11.44	□□□□□ -0.58
CCDC66-222	ENST00000494672		A0A0G2JS52	829 aa		11.42	□□□□□ -0.58
CCDC66-222	ENST00000494672	GNPAT	O15228	680 aa		11.42	□□□□□ -0.58
CCDC66-222	ENST00000494672	RCCD1	A6NED2	376 aa		11.41	□□□□□ -0.58
CCDC66-222	ENST00000494672	GPIHBP1	Q8IV16	184 aa		11.41	□□□□□ -0.58
CCDC66-222	ENST00000494672	TMEM134	Q9H6X4	195 aa		11.41	□□□□□ -0.58
CCDC66-222	ENST00000494672	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	11.39	□□□□□ -0.59
CCDC66-222	ENST00000494672	RGS20	O76081	388 aa		11.39	□□□□□ -0.59
CCDC66-222	ENST00000494672	APLP1	P51693	650 aa		11.39	□□□□□ -0.59

Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms