RNA–Protein interactions for RNA: ENST00000494672.1

CCDC66-222, Transcript of coiled-coil domain containing 66, humanhuman

TSL 4

Gene CCDC66, Length 577 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC66-222ENST00000494672 AEBP2Q6ZN18 517 aaPredicted RBP28.38■■■□□ 2.13
CCDC66-222ENST00000494672 CHIC1Q5VXU3 224 aa27.37■■□□□ 1.97
CCDC66-222ENST00000494672 SENP3Q9H4L4 574 aaPredicted RBP24.24■■□□□ 1.47
CCDC66-222ENST00000494672 PHF23Q9BUL5 403 aaPredicted RBP23.97■■□□□ 1.43
CCDC66-222ENST00000494672 FOXD1Q16676 465 aa22.5■■□□□ 1.19
CCDC66-222ENST00000494672 PLPPR3Q6T4P5 718 aa22.08■■□□□ 1.13
CCDC66-222ENST00000494672 PPP6R1Q9UPN7 881 aa21.3■■□□□ 1
CCDC66-222ENST00000494672 ADRA2BP18089 450 aa21.28■■□□□ 1
CCDC66-222ENST00000494672 PIAS4Q8N2W9 510 aaPredicted RBP21.14■□□□□ 0.97
CCDC66-222ENST00000494672 MSH5O43196 834 aa20.97■□□□□ 0.95
CCDC66-222ENST00000494672 POTEDQ86YR6 584 aa19.79■□□□□ 0.76
CCDC66-222ENST00000494672 SCAF1Q9H7N4 1312 aaKnown RBP19.58■□□□□ 0.73
CCDC66-222ENST00000494672 MAPK8IP2Q13387 824 aaPredicted RBP19.43■□□□□ 0.7
CCDC66-222ENST00000494672 PPP4R3CPQ6ZMV5 832 aa19.38■□□□□ 0.69
CCDC66-222ENST00000494672 DMRT2Q9Y5R5 561 aa19.25■□□□□ 0.67
CCDC66-222ENST00000494672 CNKSR2Q8WXI2 1034 aa18.95■□□□□ 0.62
CCDC66-222ENST00000494672 NCBP3Q53F19 620 aaKnown RBP18.81■□□□□ 0.6
CCDC66-222ENST00000494672 HOXD11P31277 338 aaPredicted RBP18.7■□□□□ 0.58
CCDC66-222ENST00000494672 RNF216Q9NWF9 866 aaPredicted RBP18.67■□□□□ 0.58
CCDC66-222ENST00000494672 DCAF8L1A6NGE4 600 aa18.49■□□□□ 0.55
CCDC66-222ENST00000494672 NPM3O75607 178 aaKnown RBP18.44■□□□□ 0.54
CCDC66-222ENST00000494672 KCNA4P22459 653 aa18.41■□□□□ 0.54
CCDC66-222ENST00000494672 DNAJC5BQ9UF47 199 aa18.01■□□□□ 0.47
CCDC66-222ENST00000494672 RNF39Q9H2S5 420 aa17.88■□□□□ 0.45
CCDC66-222ENST00000494672 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.86■□□□□ 0.45
CCDC66-222ENST00000494672 CACNB1Q02641 598 aaPredicted RBP17.78■□□□□ 0.44
CCDC66-222ENST00000494672 C1QBPQ07021 282 aaKnown RBP17.69■□□□□ 0.42
CCDC66-222ENST00000494672 SLC4A2P04920 1241 aa17.5■□□□□ 0.39
CCDC66-222ENST00000494672 SLC4A1APQ9BWU0 796 aaKnown RBP17.5■□□□□ 0.39
CCDC66-222ENST00000494672 U3KPZ7 1027 aaPredicted RBP17.45■□□□□ 0.38
CCDC66-222ENST00000494672 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.19■□□□□ 0.34
CCDC66-222ENST00000494672 HNRNPUL2Q1KMD3 747 aaKnown RBP17.19■□□□□ 0.34
CCDC66-222ENST00000494672 APLP2Q06481 763 aa17.13■□□□□ 0.33
CCDC66-222ENST00000494672 CAPN15O75808 1086 aa17.1■□□□□ 0.33
CCDC66-222ENST00000494672 FOXD4L1Q9NU39 408 aa17.1■□□□□ 0.33
CCDC66-222ENST00000494672 MYCNP04198 464 aaPredicted RBP17.09■□□□□ 0.33
CCDC66-222ENST00000494672 SPINK5Q9NQ38 1064 aaPredicted RBP17.09■□□□□ 0.33
CCDC66-222ENST00000494672 SAMD1Q6SPF0 538 aaPredicted RBP17.08■□□□□ 0.32
CCDC66-222ENST00000494672 TRHP20396 242 aaPredicted RBP16.91■□□□□ 0.3
CCDC66-222ENST00000494672 ZNF219Q9P2Y4 722 aaPredicted RBP16.91■□□□□ 0.3
CCDC66-222ENST00000494672 ZBTB22O15209 634 aa16.88■□□□□ 0.29
CCDC66-222ENST00000494672 DSG3P32926 999 aa16.88■□□□□ 0.29
CCDC66-222ENST00000494672 ABCB7O75027 752 aa16.7■□□□□ 0.26
CCDC66-222ENST00000494672 ATF5Q9Y2D1 282 aaPredicted RBP16.6■□□□□ 0.25
CCDC66-222ENST00000494672 ATXN8OSP0DMR3 200 aa16.57■□□□□ 0.24
CCDC66-222ENST00000494672 POLA2Q14181 598 aa16.54■□□□□ 0.24
CCDC66-222ENST00000494672 CSRNP3Q8WYN3 585 aa16.5■□□□□ 0.23
CCDC66-222ENST00000494672 EHMT2Q96KQ7 1210 aa16.48■□□□□ 0.23
CCDC66-222ENST00000494672 ZBTB12Q9Y330 459 aaPredicted RBP16.27■□□□□ 0.2
CCDC66-222ENST00000494672 RBM42Q9BTD8 480 aaKnown RBP16.16■□□□□ 0.18
CCDC66-222ENST00000494672 FBLN2P98095 1184 aa16.04■□□□□ 0.16
CCDC66-222ENST00000494672 OSCARQ8IYS5 282 aa15.95■□□□□ 0.14
CCDC66-222ENST00000494672 MKRN4PQ13434 485 aaPredicted RBP15.85■□□□□ 0.13
CCDC66-222ENST00000494672 AKT1S1Q96B36 256 aa15.85■□□□□ 0.13
CCDC66-222ENST00000494672 SPDYE2BA6NHP3 402 aa15.78■□□□□ 0.12
CCDC66-222ENST00000494672 SPDYE6P0CI01 402 aa15.78■□□□□ 0.12
CCDC66-222ENST00000494672 SPDYE2Q495Y8 402 aa15.78■□□□□ 0.12
CCDC66-222ENST00000494672 REM2Q8IYK8 340 aaPredicted RBP15.67■□□□□ 0.1
CCDC66-222ENST00000494672 ZNF692Q9BU19 519 aaPredicted RBP15.67■□□□□ 0.1
CCDC66-222ENST00000494672 CHRDL2Q6WN34 429 aa15.61■□□□□ 0.09
CCDC66-222ENST00000494672 POTEHQ6S545 545 aa15.59■□□□□ 0.09
CCDC66-222ENST00000494672 SSUH2Q9Y2M2 353 aa15.56■□□□□ 0.08
CCDC66-222ENST00000494672 PITPNM1O00562 1244 aa15.47■□□□□ 0.07
CCDC66-222ENST00000494672 PABPN1Q86U42 306 aaKnown RBP eCLIP15.42■□□□□ 0.06
CCDC66-222ENST00000494672 SPDYE1Q8NFV5 336 aaPredicted RBP15.42■□□□□ 0.06
CCDC66-222ENST00000494672 CLEC11AQ9Y240 323 aa15.38■□□□□ 0.05
CCDC66-222ENST00000494672 SPDYE4A6NLX3 237 aa15.36■□□□□ 0.05
CCDC66-222ENST00000494672 PIP4P2Q8N4L2 257 aa15.3■□□□□ 0.04
CCDC66-222ENST00000494672 FXR2P51116 673 aaKnown RBP eCLIP15.29■□□□□ 0.04
CCDC66-222ENST00000494672 PRR29P0C7W0 189 aa15.19■□□□□ 0.02
CCDC66-222ENST00000494672 STAG3Q9UJ98 1225 aa15.14■□□□□ 0.01
CCDC66-222ENST00000494672 PRKAR2AP13861 404 aaKnown RBP15.11■□□□□ 0.01
CCDC66-222ENST00000494672 CHADLQ6NUI6 762 aa15□□□□□ -0.01
CCDC66-222ENST00000494672 PROM2Q8N271 834 aa15□□□□□ -0.01
CCDC66-222ENST00000494672 HAX1O00165 279 aa14.99□□□□□ -0.01
CCDC66-222ENST00000494672 FKBP8Q14318 412 aa14.97□□□□□ -0.01
CCDC66-222ENST00000494672 CREBZFQ9NS37 354 aa14.83□□□□□ -0.04
CCDC66-222ENST00000494672 FARP1Q9Y4F1 1045 aaPredicted RBP14.83□□□□□ -0.04
CCDC66-222ENST00000494672 SP7Q8TDD2 431 aaPredicted RBP14.8□□□□□ -0.04
CCDC66-222ENST00000494672 C19orf67A6NJJ6 358 aa14.78□□□□□ -0.04
CCDC66-222ENST00000494672 EVX2Q03828 476 aa14.74□□□□□ -0.05
CCDC66-222ENST00000494672 PLEKHG5O94827 1062 aa14.66□□□□□ -0.06
CCDC66-222ENST00000494672 NPM1P06748 294 aaKnown RBP eCLIP14.66□□□□□ -0.06
CCDC66-222ENST00000494672 CD44P16070 742 aaKnown RBP14.66□□□□□ -0.06
CCDC66-222ENST00000494672 MIER1Q8N108 512 aa14.65□□□□□ -0.06
CCDC66-222ENST00000494672 MNX1P50219 401 aaPredicted RBP14.61□□□□□ -0.07
CCDC66-222ENST00000494672 FBXO3Q9UK99 471 aa14.61□□□□□ -0.07
CCDC66-222ENST00000494672 PLCD3Q8N3E9 789 aa14.58□□□□□ -0.08
CCDC66-222ENST00000494672 PAK3O75914 559 aaPredicted RBP14.53□□□□□ -0.08
CCDC66-222ENST00000494672 ZRANB1Q9UGI0 708 aa14.52□□□□□ -0.09
CCDC66-222ENST00000494672 GABBR2O75899 941 aa14.48□□□□□ -0.09
CCDC66-222ENST00000494672 CLCN6P51797 869 aa14.47□□□□□ -0.09
CCDC66-222ENST00000494672 ZBTB47Q9UFB7 747 aaPredicted RBP14.47□□□□□ -0.09
CCDC66-222ENST00000494672 ZNF579Q8NAF0 562 aaKnown RBP14.43□□□□□ -0.1
CCDC66-222ENST00000494672 TSPYL2Q9H2G4 693 aaPredicted RBP14.36□□□□□ -0.11
CCDC66-222ENST00000494672 VASPP50552 380 aaPredicted RBP14.35□□□□□ -0.11
CCDC66-222ENST00000494672 PHF12Q96QT6 1004 aa14.3□□□□□ -0.12
CCDC66-222ENST00000494672 RASEFQ8IZ41 740 aa14.28□□□□□ -0.12
CCDC66-222ENST00000494672 KLHL34Q8N239 644 aa14.27□□□□□ -0.13
CCDC66-222ENST00000494672 NUBP1P53384 320 aa14.26□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 558.3 ms