RNA–Protein interactions for RNA: ENST00000493551.1

CLIP4-212, Transcript of CAP-Gly domain containing linker protein family member 4, humanhuman

TSL 3

Gene CLIP4, Length 627 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4-212ENST00000493551 BCAMP50895 628 aa11.32□□□□□ -0.6
CLIP4-212ENST00000493551 MFSD10Q14728 455 aa11.32□□□□□ -0.6
CLIP4-212ENST00000493551 COL9A1P20849 921 aa11.3□□□□□ -0.6
CLIP4-212ENST00000493551 TYW1BQ6NUM6 668 aa11.3□□□□□ -0.6
CLIP4-212ENST00000493551 Q6ZNB5 142 aa11.3□□□□□ -0.6
CLIP4-212ENST00000493551 PHF14O94880 888 aa11.28□□□□□ -0.6
CLIP4-212ENST00000493551 ZFRQ96KR1 1074 aaKnown RBP11.28□□□□□ -0.6
CLIP4-212ENST00000493551 EMILIN3Q9NT22 766 aa11.28□□□□□ -0.6
CLIP4-212ENST00000493551 ONECUT3O60422 494 aaPredicted RBP11.27□□□□□ -0.61
CLIP4-212ENST00000493551 KCNC4Q03721 635 aa11.27□□□□□ -0.61
CLIP4-212ENST00000493551 KIAA1468Q9P260 1216 aa11.26□□□□□ -0.61
CLIP4-212ENST00000493551 WBP1LQ9NX94 342 aa11.25□□□□□ -0.61
CLIP4-212ENST00000493551 GTPBP6O43824 516 aaPredicted RBP11.24□□□□□ -0.61
CLIP4-212ENST00000493551 LAPTM4AQ15012 233 aa11.21□□□□□ -0.61
CLIP4-212ENST00000493551 C6orf132Q5T0Z8 1188 aa11.2□□□□□ -0.62
CLIP4-212ENST00000493551 EPAS1Q99814 870 aa11.2□□□□□ -0.62
CLIP4-212ENST00000493551 SEPT9Q9UHD8 586 aaPredicted RBP11.2□□□□□ -0.62
CLIP4-212ENST00000493551 FAM98CQ17RN3 349 aaKnown RBP11.19□□□□□ -0.62
CLIP4-212ENST00000493551 TSR3Q9UJK0 312 aaKnown RBP11.19□□□□□ -0.62
CLIP4-212ENST00000493551 TRIM6-TRIM34B2RNG4 842 aa11.18□□□□□ -0.62
CLIP4-212ENST00000493551 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.18□□□□□ -0.62
CLIP4-212ENST00000493551 LRCH3Q96II8 777 aa11.17□□□□□ -0.62
CLIP4-212ENST00000493551 HPS5Q9UPZ3 1129 aa11.16□□□□□ -0.62
CLIP4-212ENST00000493551 CAMK2BQ13554 666 aa11.11□□□□□ -0.63
CLIP4-212ENST00000493551 LCE2BO14633 110 aa11.1□□□□□ -0.63
CLIP4-212ENST00000493551 GFRA3O60609 400 aa11.1□□□□□ -0.63
CLIP4-212ENST00000493551 CADPS2Q86UW7 1296 aa11.1□□□□□ -0.63
CLIP4-212ENST00000493551 TRAF7Q6Q0C0 670 aa11.09□□□□□ -0.63
CLIP4-212ENST00000493551 RBM33Q96EV2 1170 aaKnown RBP11.09□□□□□ -0.63
CLIP4-212ENST00000493551 DPYSL4O14531 572 aa11.08□□□□□ -0.64
CLIP4-212ENST00000493551 PACS2Q86VP3 889 aa11.07□□□□□ -0.64
CLIP4-212ENST00000493551 PPP4CP60510 307 aa11.06□□□□□ -0.64
CLIP4-212ENST00000493551 DDX12PQ92771 950 aa11.04□□□□□ -0.64
CLIP4-212ENST00000493551 TSKSQ9UJT2 592 aa11.04□□□□□ -0.64
CLIP4-212ENST00000493551 EN1Q05925 392 aaPredicted RBP11.03□□□□□ -0.64
CLIP4-212ENST00000493551 TJAP1Q5JTD0 557 aa11.03□□□□□ -0.64
CLIP4-212ENST00000493551 PRKD2Q9BZL6 878 aa11.03□□□□□ -0.64
CLIP4-212ENST00000493551 NRG2O14511 850 aaPredicted RBP11.02□□□□□ -0.65
CLIP4-212ENST00000493551 MAP3K7O43318 606 aa11.01□□□□□ -0.65
CLIP4-212ENST00000493551 NBR1Q14596 966 aa11□□□□□ -0.65
CLIP4-212ENST00000493551 TSR1Q2NL82 804 aaKnown RBP10.99□□□□□ -0.65
CLIP4-212ENST00000493551 IL21Q9HBE4 155 aa10.99□□□□□ -0.65
CLIP4-212ENST00000493551 V9GY48 417 aaPredicted RBP10.99□□□□□ -0.65
CLIP4-212ENST00000493551 SAMD7Q7Z3H4 446 aa10.98□□□□□ -0.65
CLIP4-212ENST00000493551 MTRQ99707 1265 aa10.98□□□□□ -0.65
CLIP4-212ENST00000493551 PDIA6Q15084 440 aa10.96□□□□□ -0.65
CLIP4-212ENST00000493551 PPP1R18Q6NYC8 613 aa10.96□□□□□ -0.65
CLIP4-212ENST00000493551 CDCA7LQ96GN5 454 aa10.96□□□□□ -0.65
CLIP4-212ENST00000493551 DCAF8L2P0C7V8 631 aa10.95□□□□□ -0.66
CLIP4-212ENST00000493551 SMAPO00193 183 aa10.94□□□□□ -0.66
CLIP4-212ENST00000493551 PRSS12P56730 875 aa10.94□□□□□ -0.66
CLIP4-212ENST00000493551 CERKQ8TCT0 537 aa10.94□□□□□ -0.66
CLIP4-212ENST00000493551 NBPF26B4DH59 902 aa10.93□□□□□ -0.66
CLIP4-212ENST00000493551 EIF4ENIF1Q9NRA8 985 aaKnown RBP10.92□□□□□ -0.66
CLIP4-212ENST00000493551 SPDYE16A6NNV3 312 aaPredicted RBP10.91□□□□□ -0.66
CLIP4-212ENST00000493551 TATDN2Q93075 761 aa10.9□□□□□ -0.66
CLIP4-212ENST00000493551 FAM198AQ9UFP1 575 aa10.9□□□□□ -0.66
CLIP4-212ENST00000493551 C3orf80F5H4A9 247 aa10.89□□□□□ -0.67
CLIP4-212ENST00000493551 PNMA3Q9UL41 463 aa10.89□□□□□ -0.67
CLIP4-212ENST00000493551 HDGFP51858 240 aaKnown RBP10.88□□□□□ -0.67
CLIP4-212ENST00000493551 ZNF516Q92618 1163 aa10.88□□□□□ -0.67
CLIP4-212ENST00000493551 PDZRN3Q9UPQ7 1066 aa10.88□□□□□ -0.67
CLIP4-212ENST00000493551 RNF40O75150 1001 aa10.87□□□□□ -0.67
CLIP4-212ENST00000493551 ZNF787Q6DD87 383 aa10.87□□□□□ -0.67
CLIP4-212ENST00000493551 NECTIN2Q92692 538 aa10.87□□□□□ -0.67
CLIP4-212ENST00000493551 GGCXP38435 758 aa10.86□□□□□ -0.67
CLIP4-212ENST00000493551 APLP1P51693 650 aa10.85□□□□□ -0.67
CLIP4-212ENST00000493551 PRIM1P49642 420 aaKnown RBP10.84□□□□□ -0.67
CLIP4-212ENST00000493551 RBM27Q9P2N5 1060 aaKnown RBP10.84□□□□□ -0.67
CLIP4-212ENST00000493551 NUDT18Q6ZVK8 323 aa10.82□□□□□ -0.68
CLIP4-212ENST00000493551 NISCHQ9Y2I1 1504 aa10.82□□□□□ -0.68
CLIP4-212ENST00000493551 NKX2-3Q8TAU0 364 aa10.81□□□□□ -0.68
CLIP4-212ENST00000493551 TMUB1Q9BVT8 246 aa10.81□□□□□ -0.68
CLIP4-212ENST00000493551 GRXCR2A6NFK2 248 aa10.8□□□□□ -0.68
CLIP4-212ENST00000493551 COPS2P61201 443 aa10.78□□□□□ -0.68
CLIP4-212ENST00000493551 SLF2Q8IX21 1173 aa10.78□□□□□ -0.68
CLIP4-212ENST00000493551 ZNF775Q96BV0 537 aaPredicted RBP10.77□□□□□ -0.69
CLIP4-212ENST00000493551 CDHR5Q9HBB8 845 aa10.77□□□□□ -0.69
CLIP4-212ENST00000493551 ARIH1Q9Y4X5 557 aaPredicted RBP10.76□□□□□ -0.69
CLIP4-212ENST00000493551 SLC4A3P48751 1232 aa10.75□□□□□ -0.69
CLIP4-212ENST00000493551 E2F4Q16254 413 aa10.75□□□□□ -0.69
CLIP4-212ENST00000493551 SWT1Q5T5J6 900 aaKnown RBP10.75□□□□□ -0.69
CLIP4-212ENST00000493551 ZPR1O75312 459 aa10.74□□□□□ -0.69
CLIP4-212ENST00000493551 OSBPP22059 807 aa10.73□□□□□ -0.69
CLIP4-212ENST00000493551 TTC13Q8NBP0 860 aa10.73□□□□□ -0.69
CLIP4-212ENST00000493551 PRR14Q9BWN1 585 aa10.73□□□□□ -0.69
CLIP4-212ENST00000493551 SLC19A1P41440 591 aa10.7□□□□□ -0.7
CLIP4-212ENST00000493551 PADI6Q6TGC4 694 aa10.7□□□□□ -0.7
CLIP4-212ENST00000493551 TRIM67Q6ZTA4 783 aa10.7□□□□□ -0.7
CLIP4-212ENST00000493551 BBXQ8WY36 941 aaPredicted RBP10.7□□□□□ -0.7
CLIP4-212ENST00000493551 PKDCCQ504Y2 493 aa10.69□□□□□ -0.7
CLIP4-212ENST00000493551 PCDHB3Q9Y5E6 796 aa10.69□□□□□ -0.7
CLIP4-212ENST00000493551 RNF223E7ERA6 249 aa10.67□□□□□ -0.7
CLIP4-212ENST00000493551 DGAT1O75907 488 aa10.67□□□□□ -0.7
CLIP4-212ENST00000493551 NPDC1Q9NQX5 325 aaPredicted RBP10.66□□□□□ -0.7
CLIP4-212ENST00000493551 PRR20EP86478 221 aa10.65□□□□□ -0.7
CLIP4-212ENST00000493551 PRR20CP86479 221 aa10.65□□□□□ -0.7
CLIP4-212ENST00000493551 PRR20DP86480 221 aa10.65□□□□□ -0.7
CLIP4-212ENST00000493551 PRR20BP86481 221 aa10.65□□□□□ -0.7
CLIP4-212ENST00000493551 PRR20AP86496 221 aa10.65□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms