RNA–Protein interactions for RNA: ENST00000493551.1

CLIP4-212, Transcript of CAP-Gly domain containing linker protein family member 4, humanhuman

TSL 3

Gene CLIP4, Length 627 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4-212ENST00000493551 AEBP2Q6ZN18 517 aaPredicted RBP28.73■■■□□ 2.19
CLIP4-212ENST00000493551 CHIC1Q5VXU3 224 aa27■■□□□ 1.91
CLIP4-212ENST00000493551 SENP3Q9H4L4 574 aaPredicted RBP24.65■■□□□ 1.54
CLIP4-212ENST00000493551 PHF23Q9BUL5 403 aaPredicted RBP24.23■■□□□ 1.47
CLIP4-212ENST00000493551 FOXD1Q16676 465 aa22.96■■□□□ 1.27
CLIP4-212ENST00000493551 POTEDQ86YR6 584 aa21.7■■□□□ 1.06
CLIP4-212ENST00000493551 MSH5O43196 834 aa21.69■■□□□ 1.06
CLIP4-212ENST00000493551 PLPPR3Q6T4P5 718 aa21.44■■□□□ 1.02
CLIP4-212ENST00000493551 PIAS4Q8N2W9 510 aaPredicted RBP21.4■■□□□ 1.02
CLIP4-212ENST00000493551 PPP6R1Q9UPN7 881 aa21.16■□□□□ 0.98
CLIP4-212ENST00000493551 ADRA2BP18089 450 aa21.09■□□□□ 0.97
CLIP4-212ENST00000493551 DMRT2Q9Y5R5 561 aa19.47■□□□□ 0.71
CLIP4-212ENST00000493551 MAPK8IP2Q13387 824 aaPredicted RBP19.46■□□□□ 0.71
CLIP4-212ENST00000493551 SCAF1Q9H7N4 1312 aaKnown RBP19.39■□□□□ 0.69
CLIP4-212ENST00000493551 CACNB1Q02641 598 aaPredicted RBP18.79■□□□□ 0.6
CLIP4-212ENST00000493551 PPP4R3CPQ6ZMV5 832 aa18.72■□□□□ 0.59
CLIP4-212ENST00000493551 DCAF8L1A6NGE4 600 aa18.68■□□□□ 0.58
CLIP4-212ENST00000493551 HOXD11P31277 338 aaPredicted RBP18.62■□□□□ 0.57
CLIP4-212ENST00000493551 CNKSR2Q8WXI2 1034 aa18.48■□□□□ 0.55
CLIP4-212ENST00000493551 RNF39Q9H2S5 420 aa18.44■□□□□ 0.54
CLIP4-212ENST00000493551 RNF216Q9NWF9 866 aaPredicted RBP18.4■□□□□ 0.54
CLIP4-212ENST00000493551 C1QBPQ07021 282 aaKnown RBP18.18■□□□□ 0.5
CLIP4-212ENST00000493551 DNAJC5BQ9UF47 199 aa18.09■□□□□ 0.49
CLIP4-212ENST00000493551 NCBP3Q53F19 620 aaKnown RBP17.95■□□□□ 0.46
CLIP4-212ENST00000493551 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.74■□□□□ 0.43
CLIP4-212ENST00000493551 NPM3O75607 178 aaKnown RBP17.63■□□□□ 0.41
CLIP4-212ENST00000493551 U3KPZ7 1027 aaPredicted RBP17.31■□□□□ 0.36
CLIP4-212ENST00000493551 CAPN15O75808 1086 aa17.17■□□□□ 0.34
CLIP4-212ENST00000493551 SPINK5Q9NQ38 1064 aaPredicted RBP17.15■□□□□ 0.34
CLIP4-212ENST00000493551 DSG3P32926 999 aa17.14■□□□□ 0.33
CLIP4-212ENST00000493551 KCNA4P22459 653 aa16.97■□□□□ 0.31
CLIP4-212ENST00000493551 POTEHQ6S545 545 aa16.95■□□□□ 0.3
CLIP4-212ENST00000493551 SLC4A2P04920 1241 aa16.91■□□□□ 0.3
CLIP4-212ENST00000493551 APLP2Q06481 763 aa16.89■□□□□ 0.29
CLIP4-212ENST00000493551 ZNF219Q9P2Y4 722 aaPredicted RBP16.81■□□□□ 0.28
CLIP4-212ENST00000493551 TRHP20396 242 aaPredicted RBP16.8■□□□□ 0.28
CLIP4-212ENST00000493551 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.77■□□□□ 0.28
CLIP4-212ENST00000493551 HNRNPUL2Q1KMD3 747 aaKnown RBP16.77■□□□□ 0.28
CLIP4-212ENST00000493551 ABCB7O75027 752 aa16.72■□□□□ 0.27
CLIP4-212ENST00000493551 SAMD1Q6SPF0 538 aaPredicted RBP16.64■□□□□ 0.25
CLIP4-212ENST00000493551 RBM42Q9BTD8 480 aaKnown RBP16.43■□□□□ 0.22
CLIP4-212ENST00000493551 MYCNP04198 464 aaPredicted RBP16.36■□□□□ 0.21
CLIP4-212ENST00000493551 POLA2Q14181 598 aa16.27■□□□□ 0.2
CLIP4-212ENST00000493551 CHRDL2Q6WN34 429 aa16.16■□□□□ 0.18
CLIP4-212ENST00000493551 FOXD4L1Q9NU39 408 aa15.99■□□□□ 0.15
CLIP4-212ENST00000493551 SLC4A1APQ9BWU0 796 aaKnown RBP15.98■□□□□ 0.15
CLIP4-212ENST00000493551 ZBTB12Q9Y330 459 aaPredicted RBP15.98■□□□□ 0.15
CLIP4-212ENST00000493551 AKT1S1Q96B36 256 aa15.95■□□□□ 0.14
CLIP4-212ENST00000493551 ATF5Q9Y2D1 282 aaPredicted RBP15.95■□□□□ 0.14
CLIP4-212ENST00000493551 REM2Q8IYK8 340 aaPredicted RBP15.77■□□□□ 0.12
CLIP4-212ENST00000493551 OSCARQ8IYS5 282 aa15.76■□□□□ 0.11
CLIP4-212ENST00000493551 SP7Q8TDD2 431 aaPredicted RBP15.74■□□□□ 0.11
CLIP4-212ENST00000493551 PIP4P2Q8N4L2 257 aa15.69■□□□□ 0.1
CLIP4-212ENST00000493551 PITPNM1O00562 1244 aa15.61■□□□□ 0.09
CLIP4-212ENST00000493551 ZBTB22O15209 634 aa15.59■□□□□ 0.09
CLIP4-212ENST00000493551 ATXN8OSP0DMR3 200 aa15.56■□□□□ 0.08
CLIP4-212ENST00000493551 FXR2P51116 673 aaKnown RBP eCLIP15.54■□□□□ 0.08
CLIP4-212ENST00000493551 HAX1O00165 279 aa15.51■□□□□ 0.07
CLIP4-212ENST00000493551 SPDYE2BA6NHP3 402 aa15.43■□□□□ 0.06
CLIP4-212ENST00000493551 SPDYE6P0CI01 402 aa15.43■□□□□ 0.06
CLIP4-212ENST00000493551 SPDYE2Q495Y8 402 aa15.43■□□□□ 0.06
CLIP4-212ENST00000493551 FBLN2P98095 1184 aa15.42■□□□□ 0.06
CLIP4-212ENST00000493551 EVX2Q03828 476 aa15.26■□□□□ 0.03
CLIP4-212ENST00000493551 SPDYE1Q8NFV5 336 aaPredicted RBP15.24■□□□□ 0.03
CLIP4-212ENST00000493551 PRKAR2AP13861 404 aaKnown RBP15.21■□□□□ 0.03
CLIP4-212ENST00000493551 CLEC11AQ9Y240 323 aa15.21■□□□□ 0.03
CLIP4-212ENST00000493551 MKRN4PQ13434 485 aaPredicted RBP15.19■□□□□ 0.02
CLIP4-212ENST00000493551 ZNF692Q9BU19 519 aaPredicted RBP15.17■□□□□ 0.02
CLIP4-212ENST00000493551 SSUH2Q9Y2M2 353 aa15.16■□□□□ 0.02
CLIP4-212ENST00000493551 C19orf67A6NJJ6 358 aa15.06■□□□□ 0
CLIP4-212ENST00000493551 CHADLQ6NUI6 762 aa14.93□□□□□ -0.02
CLIP4-212ENST00000493551 PRR29P0C7W0 189 aa14.92□□□□□ -0.02
CLIP4-212ENST00000493551 PABPN1Q86U42 306 aaKnown RBP eCLIP14.92□□□□□ -0.02
CLIP4-212ENST00000493551 GABBR2O75899 941 aa14.91□□□□□ -0.02
CLIP4-212ENST00000493551 LHX8Q68G74 356 aa14.75□□□□□ -0.05
CLIP4-212ENST00000493551 CD44P16070 742 aaKnown RBP14.71□□□□□ -0.05
CLIP4-212ENST00000493551 FARP1Q9Y4F1 1045 aaPredicted RBP14.7□□□□□ -0.06
CLIP4-212ENST00000493551 CLCN6P51797 869 aa14.65□□□□□ -0.06
CLIP4-212ENST00000493551 POTEIP0CG38 1075 aa14.57□□□□□ -0.08
CLIP4-212ENST00000493551 CSRNP3Q8WYN3 585 aa14.55□□□□□ -0.08
CLIP4-212ENST00000493551 STAG3Q9UJ98 1225 aa14.49□□□□□ -0.09
CLIP4-212ENST00000493551 ZNF579Q8NAF0 562 aaKnown RBP14.48□□□□□ -0.09
CLIP4-212ENST00000493551 DCBLD2Q96PD2 775 aa14.47□□□□□ -0.09
CLIP4-212ENST00000493551 CREBZFQ9NS37 354 aa14.44□□□□□ -0.1
CLIP4-212ENST00000493551 ZRANB1Q9UGI0 708 aa14.44□□□□□ -0.1
CLIP4-212ENST00000493551 SPDYE4A6NLX3 237 aa14.33□□□□□ -0.12
CLIP4-212ENST00000493551 PAK3O75914 559 aaPredicted RBP14.3□□□□□ -0.12
CLIP4-212ENST00000493551 GALR2O43603 387 aaPredicted RBP14.29□□□□□ -0.12
CLIP4-212ENST00000493551 NPM1P06748 294 aaKnown RBP eCLIP14.22□□□□□ -0.13
CLIP4-212ENST00000493551 PHF12Q96QT6 1004 aa14.19□□□□□ -0.14
CLIP4-212ENST00000493551 EHMT2Q96KQ7 1210 aa14.18□□□□□ -0.14
CLIP4-212ENST00000493551 MNX1P50219 401 aaPredicted RBP14.15□□□□□ -0.14
CLIP4-212ENST00000493551 OTUD5Q96G74 571 aa14.11□□□□□ -0.15
CLIP4-212ENST00000493551 POTEB2H3BUK9 544 aa14.1□□□□□ -0.15
CLIP4-212ENST00000493551 PLSCR2Q9NRY7 297 aa14.08□□□□□ -0.16
CLIP4-212ENST00000493551 PELP1Q8IZL8 1130 aaKnown RBP14.02□□□□□ -0.17
CLIP4-212ENST00000493551 ASTLQ6HA08 431 aaPredicted RBP14□□□□□ -0.17
CLIP4-212ENST00000493551 MS4A3Q96HJ5 214 aa14□□□□□ -0.17
CLIP4-212ENST00000493551 METRNQ9UJH8 293 aa13.96□□□□□ -0.17
CLIP4-212ENST00000493551 SLC39A7Q92504 469 aa13.95□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 95.3 ms