RNA–Protein interactions for RNA: ENST00000492417.5

TRA2B-215, Transcript of transformer 2 beta homolog, humanhuman

TSL 1 (best)

Gene TRA2B, Length 4,141 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRA2B-215ENST00000492417 SAMD9Q5K651 1589 aa6.12□□□□□ -1.43
TRA2B-215ENST00000492417 DHX57Q6P158 1386 aaKnown RBP6.12□□□□□ -1.43
TRA2B-215ENST00000492417 THEMISQ8N1K5 641 aaPredicted RBP6.12□□□□□ -1.43
TRA2B-215ENST00000492417 CLASP1Q7Z460 1538 aa6.12□□□□□ -1.43
TRA2B-215ENST00000492417 ROCK2O75116 1388 aaKnown RBP6.12□□□□□ -1.43
TRA2B-215ENST00000492417 KDM5BQ9UGL1 1544 aa6.11□□□□□ -1.43
TRA2B-215ENST00000492417 IDI1Q13907 227 aa6.11□□□□□ -1.43
TRA2B-215ENST00000492417 MINK1Q8N4C8 1332 aaPredicted RBP6.11□□□□□ -1.43
TRA2B-215ENST00000492417 PTPN23Q9H3S7 1636 aa6.11□□□□□ -1.43
TRA2B-215ENST00000492417 CFAP70Q5T0N1 1121 aa6.11□□□□□ -1.43
TRA2B-215ENST00000492417 NCOA1Q15788 1441 aa6.11□□□□□ -1.43
TRA2B-215ENST00000492417 ABCA8O94911 1581 aa6.11□□□□□ -1.43
TRA2B-215ENST00000492417 DHX29Q7Z478 1369 aaKnown RBP6.1□□□□□ -1.43
TRA2B-215ENST00000492417 PTPRKQ15262 1439 aa6.1□□□□□ -1.43
TRA2B-215ENST00000492417 HSPA5P11021 654 aaKnown RBP6.1□□□□□ -1.43
TRA2B-215ENST00000492417 MAGI3Q5TCQ9 1506 aa6.1□□□□□ -1.43
TRA2B-215ENST00000492417 ANKLE2Q86XL3 938 aa6.1□□□□□ -1.43
TRA2B-215ENST00000492417 NAIPQ13075 1403 aa6.1□□□□□ -1.43
TRA2B-215ENST00000492417 ZNF518AQ6AHZ1 1483 aa6.09□□□□□ -1.43
TRA2B-215ENST00000492417 YEATS2Q9ULM3 1422 aa6.09□□□□□ -1.43
TRA2B-215ENST00000492417 RTL5Q5HYW3 569 aaPredicted RBP6.09□□□□□ -1.43
TRA2B-215ENST00000492417 PROSER2Q86WR7 435 aaPredicted RBP6.09□□□□□ -1.43
TRA2B-215ENST00000492417 SLC52A1Q9NWF4 448 aa6.09□□□□□ -1.43
TRA2B-215ENST00000492417 UHRF1BP1LA0JNW5 1464 aa6.09□□□□□ -1.43
TRA2B-215ENST00000492417 TMF1P82094 1093 aa6.09□□□□□ -1.44
TRA2B-215ENST00000492417 CC2D1BQ5T0F9 858 aaKnown RBP6.09□□□□□ -1.44
TRA2B-215ENST00000492417 NGDNQ8NEJ9 315 aaKnown RBP6.09□□□□□ -1.44
TRA2B-215ENST00000492417 MAP3K1Q13233 1512 aa6.08□□□□□ -1.44
TRA2B-215ENST00000492417 ST20-MTHFSA0A0A6YYL1 179 aa6.08□□□□□ -1.44
TRA2B-215ENST00000492417 NEFMP07197 916 aa6.08□□□□□ -1.44
TRA2B-215ENST00000492417 FAM9BQ8IZU0 186 aa6.08□□□□□ -1.44
TRA2B-215ENST00000492417 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP6.08□□□□□ -1.44
TRA2B-215ENST00000492417 ABCF1Q8NE71 845 aaKnown RBP eCLIP6.08□□□□□ -1.44
TRA2B-215ENST00000492417 KNSTRNQ9Y448 316 aa6.08□□□□□ -1.44
TRA2B-215ENST00000492417 HFM1A2PYH4 1435 aa6.08□□□□□ -1.44
TRA2B-215ENST00000492417 A2MP01023 1474 aa6.08□□□□□ -1.44
TRA2B-215ENST00000492417 ABCC10Q5T3U5 1492 aa6.08□□□□□ -1.44
TRA2B-215ENST00000492417 ZCCHC11Q5TAX3 1644 aaKnown RBP6.08□□□□□ -1.44
TRA2B-215ENST00000492417 NBPF1Q3BBV0 1214 aa6.08□□□□□ -1.44
TRA2B-215ENST00000492417 CLSPNQ9HAW4 1339 aa6.08□□□□□ -1.44
TRA2B-215ENST00000492417 DAXXQ9UER7 740 aaPredicted RBP6.07□□□□□ -1.44
TRA2B-215ENST00000492417 PIP4K2BP78356 416 aa6.07□□□□□ -1.44
TRA2B-215ENST00000492417 CDCA8Q53HL2 280 aa6.07□□□□□ -1.44
TRA2B-215ENST00000492417 SUGP2Q8IX01 1082 aaKnown RBP eCLIP6.07□□□□□ -1.445e-7■■□□□ 13.5
TRA2B-215ENST00000492417 ADCY10Q96PN6 1610 aa6.06□□□□□ -1.44
TRA2B-215ENST00000492417 KIAA1107Q9UPP5 1409 aa6.06□□□□□ -1.44
TRA2B-215ENST00000492417 ROCK1Q13464 1354 aa6.05□□□□□ -1.44
TRA2B-215ENST00000492417 ZMYM3Q14202 1370 aa6.05□□□□□ -1.44
TRA2B-215ENST00000492417 ATF3P18847 181 aa6.05□□□□□ -1.44
TRA2B-215ENST00000492417 NUTM2GQ5VZR2 741 aa6.05□□□□□ -1.44
TRA2B-215ENST00000492417 TIMELESSQ9UNS1 1208 aa6.05□□□□□ -1.44
TRA2B-215ENST00000492417 TTC37Q6PGP7 1564 aa6.05□□□□□ -1.44
TRA2B-215ENST00000492417 ERBINQ96RT1 1412 aa6.04□□□□□ -1.44
TRA2B-215ENST00000492417 CCDC9Q9Y3X0 531 aaKnown RBP6.04□□□□□ -1.44
TRA2B-215ENST00000492417 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP6.04□□□□□ -1.44
TRA2B-215ENST00000492417 CFAP65Q6ZU64 1925 aaKnown RBP6.04□□□□□ -1.44
TRA2B-215ENST00000492417 NCKAP5LQ9HCH0 1330 aa6.04□□□□□ -1.44
TRA2B-215ENST00000492417 PMFBP1Q8TBY8 1022 aa6.04□□□□□ -1.44
TRA2B-215ENST00000492417 PRAM1Q96QH2 718 aa6.04□□□□□ -1.44
TRA2B-215ENST00000492417 MRS2Q9HD23 443 aa6.04□□□□□ -1.44
TRA2B-215ENST00000492417 TNRQ92752 1358 aa6.04□□□□□ -1.44
TRA2B-215ENST00000492417 WAPLQ7Z5K2 1190 aa6.04□□□□□ -1.44
TRA2B-215ENST00000492417 CABP2Q9NPB3 220 aa6.04□□□□□ -1.44
TRA2B-215ENST00000492417 ATP10AO60312 1499 aa6.04□□□□□ -1.44
TRA2B-215ENST00000492417 NBPF8Q3BBV2 869 aa6.03□□□□□ -1.44
TRA2B-215ENST00000492417 HDGFL2Q7Z4V5 671 aaPredicted RBP6.03□□□□□ -1.44
TRA2B-215ENST00000492417 BCL11AQ9H165 835 aa6.03□□□□□ -1.44
TRA2B-215ENST00000492417 NEO1Q92859 1461 aa6.03□□□□□ -1.44
TRA2B-215ENST00000492417 XPCQ01831 940 aaPredicted RBP6.03□□□□□ -1.44
TRA2B-215ENST00000492417 ADGRF5Q8IZF2 1346 aa6.03□□□□□ -1.44
TRA2B-215ENST00000492417 NEUROD2Q15784 382 aa6.03□□□□□ -1.44
TRA2B-215ENST00000492417 ESCO1Q5FWF5 840 aa6.03□□□□□ -1.44
TRA2B-215ENST00000492417 LTV1Q96GA3 475 aaPredicted RBP6.03□□□□□ -1.44
TRA2B-215ENST00000492417 PPP6R1Q9UPN7 881 aa6.02□□□□□ -1.45
TRA2B-215ENST00000492417 U2SURPO15042 1029 aaKnown RBP6.02□□□□□ -1.45
TRA2B-215ENST00000492417 PSME1Q06323 249 aa6.02□□□□□ -1.45
TRA2B-215ENST00000492417 WDR43Q15061 677 aaKnown RBP eCLIP6.02□□□□□ -1.45
TRA2B-215ENST00000492417 ITSN2Q9NZM3 1697 aa6.02□□□□□ -1.45
TRA2B-215ENST00000492417 CSB-PGBD3P0DP91 1061 aa6.02□□□□□ -1.45
TRA2B-215ENST00000492417 MORC1Q86VD1 984 aa6.01□□□□□ -1.45
TRA2B-215ENST00000492417 CENPJQ9HC77 1338 aaPredicted RBP6.01□□□□□ -1.45
TRA2B-215ENST00000492417 MIER1Q8N108 512 aa6.01□□□□□ -1.45
TRA2B-215ENST00000492417 AMOTL2Q9Y2J4 779 aa6.01□□□□□ -1.45
TRA2B-215ENST00000492417 CFAP43Q8NDM7 1665 aa6.01□□□□□ -1.45
TRA2B-215ENST00000492417 ATP7AQ04656 1500 aa6.01□□□□□ -1.45
TRA2B-215ENST00000492417 ARHGEF12Q9NZN5 1544 aa6.01□□□□□ -1.45
TRA2B-215ENST00000492417 RTN4Q9NQC3 1192 aaKnown RBP6.01□□□□□ -1.45
TRA2B-215ENST00000492417 SHROOM2Q13796 1616 aa6□□□□□ -1.45
TRA2B-215ENST00000492417 EIF3AQ14152 1382 aaKnown RBP6□□□□□ -1.45
TRA2B-215ENST00000492417 MBD5Q9P267 1494 aa6□□□□□ -1.45
TRA2B-215ENST00000492417 KDM6BO15054 1643 aa6□□□□□ -1.45
TRA2B-215ENST00000492417 EVC2Q86UK5 1308 aa6□□□□□ -1.45
TRA2B-215ENST00000492417 USP47Q96K76 1375 aa6□□□□□ -1.45
TRA2B-215ENST00000492417 ZFYVE16Q7Z3T8 1539 aa6□□□□□ -1.45
TRA2B-215ENST00000492417 DUOX2Q9NRD8 1548 aa6□□□□□ -1.45
TRA2B-215ENST00000492417 NUTM2BA6NNL0 878 aaPredicted RBP6□□□□□ -1.45
TRA2B-215ENST00000492417 NUTM2EB1AL46 878 aaPredicted RBP6□□□□□ -1.45
TRA2B-215ENST00000492417 HNRNPUQ00839 825 aaKnown RBP eCLIP6□□□□□ -1.45
TRA2B-215ENST00000492417 NUTM2AQ8IVF1 878 aaPredicted RBP6□□□□□ -1.45
TRA2B-215ENST00000492417 TERF2IPQ9NYB0 399 aa6□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms