RNA–Protein interactions for RNA: ENST00000490135.6

SYNE1-228, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 5,707 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-228ENST00000490135 TEX35Q5T0J7 233 aa8.99□□□□□ -0.97
SYNE1-228ENST00000490135 GPATCH11Q8N954 259 aa8.98□□□□□ -0.97
SYNE1-228ENST00000490135 RRAGDQ9NQL2 400 aaPredicted RBP8.98□□□□□ -0.97
SYNE1-228ENST00000490135 ZNF526Q8TF50 670 aaPredicted RBP8.98□□□□□ -0.97
SYNE1-228ENST00000490135 FAM161AQ3B820 660 aa8.97□□□□□ -0.97
SYNE1-228ENST00000490135 RGL3Q3MIN7 710 aa8.97□□□□□ -0.97
SYNE1-228ENST00000490135 GORABQ5T7V8 394 aa8.97□□□□□ -0.97
SYNE1-228ENST00000490135 CNPY4Q8N129 248 aa8.97□□□□□ -0.97
SYNE1-228ENST00000490135 RTF1Q92541 710 aaKnown RBP8.96□□□□□ -0.97
SYNE1-228ENST00000490135 SIN3AQ96ST3 1273 aa8.96□□□□□ -0.97
SYNE1-228ENST00000490135 GRPEL1Q9HAV7 217 aa8.96□□□□□ -0.98
SYNE1-228ENST00000490135 CWC15Q9P013 229 aaKnown RBP8.96□□□□□ -0.98
SYNE1-228ENST00000490135 ZNF330Q9Y3S2 320 aaPredicted RBP8.96□□□□□ -0.98
SYNE1-228ENST00000490135 BAZ1BQ9UIG0 1483 aaKnown RBP8.96□□□□□ -0.98
SYNE1-228ENST00000490135 GTF2A1P52655 376 aaPredicted RBP8.96□□□□□ -0.98
SYNE1-228ENST00000490135 HDAC5Q9UQL6 1122 aa8.95□□□□□ -0.98
SYNE1-228ENST00000490135 CEP162Q5TB80 1403 aa8.95□□□□□ -0.98
SYNE1-228ENST00000490135 CCDC70Q6NSX1 233 aa8.95□□□□□ -0.98
SYNE1-228ENST00000490135 CCDC39Q9UFE4 941 aa8.95□□□□□ -0.98
SYNE1-228ENST00000490135 KIF3AQ9Y496 699 aa8.95□□□□□ -0.98
SYNE1-228ENST00000490135 ERICH4A6NGS2 130 aa8.95□□□□□ -0.98
SYNE1-228ENST00000490135 TSR1Q2NL82 804 aaKnown RBP8.95□□□□□ -0.98
SYNE1-228ENST00000490135 TEX2Q8IWB9 1127 aa8.95□□□□□ -0.98
SYNE1-228ENST00000490135 LMOD3Q0VAK6 560 aa8.94□□□□□ -0.98
SYNE1-228ENST00000490135 CCDC94Q9BW85 323 aaPredicted RBP8.94□□□□□ -0.98
SYNE1-228ENST00000490135 NASPP49321 788 aaPredicted RBP8.94□□□□□ -0.98
SYNE1-228ENST00000490135 TNNT1P13805 278 aa8.94□□□□□ -0.98
SYNE1-228ENST00000490135 CALCOCO1Q9P1Z2 691 aa8.94□□□□□ -0.98
SYNE1-228ENST00000490135 MTUS2Q5JR59 1369 aa8.94□□□□□ -0.98
SYNE1-228ENST00000490135 PES1O00541 588 aaKnown RBP8.94□□□□□ -0.98
SYNE1-228ENST00000490135 TIGD1Q96MW7 591 aa8.94□□□□□ -0.98
SYNE1-228ENST00000490135 TCEAL9Q9UHQ7 104 aa8.94□□□□□ -0.98
SYNE1-228ENST00000490135 RSPH4AQ5TD94 716 aa8.93□□□□□ -0.98
SYNE1-228ENST00000490135 TPD52L1Q16890 204 aaPredicted RBP8.93□□□□□ -0.98
SYNE1-228ENST00000490135 GPATCH3Q96I76 525 aa8.93□□□□□ -0.98
SYNE1-228ENST00000490135 HMGB1P09429 215 aaKnown RBP8.92□□□□□ -0.98
SYNE1-228ENST00000490135 SASS6Q6UVJ0 657 aa8.92□□□□□ -0.98
SYNE1-228ENST00000490135 DYNC1I1O14576 645 aa8.92□□□□□ -0.98
SYNE1-228ENST00000490135 GPS2Q13227 327 aa8.92□□□□□ -0.98
SYNE1-228ENST00000490135 UTP3Q9NQZ2 479 aaKnown RBP eCLIP8.92□□□□□ -0.98
SYNE1-228ENST00000490135 SOX12O15370 315 aa8.92□□□□□ -0.98
SYNE1-228ENST00000490135 TRAK2O60296 914 aa8.92□□□□□ -0.98
SYNE1-228ENST00000490135 KIF20AO95235 890 aa8.92□□□□□ -0.98
SYNE1-228ENST00000490135 ABCF1Q8NE71 845 aaKnown RBP eCLIP8.92□□□□□ -0.98
SYNE1-228ENST00000490135 APBB1O00213 710 aa8.91□□□□□ -0.98
SYNE1-228ENST00000490135 CSB-PGBD3P0DP91 1061 aa8.91□□□□□ -0.98
SYNE1-228ENST00000490135 HDGFP51858 240 aaKnown RBP8.91□□□□□ -0.98
SYNE1-228ENST00000490135 DEF6Q9H4E7 631 aa8.91□□□□□ -0.98
SYNE1-228ENST00000490135 ZNF622Q969S3 477 aaKnown RBP eCLIP8.91□□□□□ -0.98
SYNE1-228ENST00000490135 HMGN5P82970 282 aaKnown RBP8.91□□□□□ -0.98
SYNE1-228ENST00000490135 CHMP7Q8WUX9 453 aaPredicted RBP8.91□□□□□ -0.98
SYNE1-228ENST00000490135 CARD11Q9BXL7 1154 aa8.91□□□□□ -0.98
SYNE1-228ENST00000490135 RCAN3Q9UKA8 241 aa8.91□□□□□ -0.98
SYNE1-228ENST00000490135 CHMP3Q9Y3E7 222 aa8.91□□□□□ -0.98
SYNE1-228ENST00000490135 CTDP1Q9Y5B0 961 aaPredicted RBP8.91□□□□□ -0.98
SYNE1-228ENST00000490135 CENPJQ9HC77 1338 aaPredicted RBP8.9□□□□□ -0.98
SYNE1-228ENST00000490135 ZSCAN30Q86W11 494 aa8.9□□□□□ -0.98
SYNE1-228ENST00000490135 TRIM6-TRIM34B2RNG4 842 aa8.9□□□□□ -0.98
SYNE1-228ENST00000490135 PDCL2Q8N4E4 241 aa8.9□□□□□ -0.98
SYNE1-228ENST00000490135 SECISBP2LQ93073 1101 aaKnown RBP8.9□□□□□ -0.98
SYNE1-228ENST00000490135 PLCD4Q9BRC7 762 aa8.9□□□□□ -0.98
SYNE1-228ENST00000490135 TRIM34Q9BYJ4 488 aa8.9□□□□□ -0.98
SYNE1-228ENST00000490135 TPM1P09493 284 aa8.9□□□□□ -0.98
SYNE1-228ENST00000490135 TOMM22Q9NS69 142 aa8.9□□□□□ -0.98
SYNE1-228ENST00000490135 DMTNQ08495 405 aa8.89□□□□□ -0.99
SYNE1-228ENST00000490135 STAC3Q96MF2 364 aa8.89□□□□□ -0.99
SYNE1-228ENST00000490135 EXOC6Q8TAG9 804 aa8.89□□□□□ -0.99
SYNE1-228ENST00000490135 BACH2Q9BYV9 841 aa8.89□□□□□ -0.99
SYNE1-228ENST00000490135 DIAPH3Q9NSV4 1193 aa8.89□□□□□ -0.99
SYNE1-228ENST00000490135 ZBED9Q6R2W3 1325 aa8.89□□□□□ -0.99
SYNE1-228ENST00000490135 CERS3Q8IU89 383 aa8.89□□□□□ -0.99
SYNE1-228ENST00000490135 RRP7BPQ9NSQ0 103 aa8.89□□□□□ -0.99
SYNE1-228ENST00000490135 IPO8O15397 1037 aaKnown RBP8.89□□□□□ -0.99
SYNE1-228ENST00000490135 HMMRO75330 724 aa8.89□□□□□ -0.99
SYNE1-228ENST00000490135 CCAR2Q8N163 923 aaKnown RBP8.89□□□□□ -0.99
SYNE1-228ENST00000490135 TRERF1Q96PN7 1200 aa8.89□□□□□ -0.99
SYNE1-228ENST00000490135 SF3A1Q15459 793 aaKnown RBP8.88□□□□□ -0.99
SYNE1-228ENST00000490135 UTP14CQ5TAP6 766 aaKnown RBP8.88□□□□□ -0.99
SYNE1-228ENST00000490135 NBPF1Q3BBV0 1214 aa8.88□□□□□ -0.99
SYNE1-228ENST00000490135 CHMP5Q9NZZ3 219 aa8.88□□□□□ -0.99
SYNE1-228ENST00000490135 DDX49Q9Y6V7 483 aaKnown RBP8.88□□□□□ -0.99
SYNE1-228ENST00000490135 PHF14O94880 888 aa8.87□□□□□ -0.99
SYNE1-228ENST00000490135 SPDYE4A6NLX3 237 aa8.87□□□□□ -0.99
SYNE1-228ENST00000490135 CWC22Q9HCG8 908 aaKnown RBP8.87□□□□□ -0.99
SYNE1-228ENST00000490135 PLEKHD1A6NEE1 506 aa8.87□□□□□ -0.99
SYNE1-228ENST00000490135 CDR1P51861 262 aa8.87□□□□□ -0.99
SYNE1-228ENST00000490135 BANK1Q8NDB2 785 aa8.86□□□□□ -0.99
SYNE1-228ENST00000490135 GTF2E1P29083 439 aaPredicted RBP8.86□□□□□ -0.99
SYNE1-228ENST00000490135 RRP1P56182 461 aaKnown RBP8.86□□□□□ -0.99
SYNE1-228ENST00000490135 TDO2P48775 406 aa8.85□□□□□ -0.99
SYNE1-228ENST00000490135 SSR1P43307 286 aaKnown RBP8.85□□□□□ -0.99
SYNE1-228ENST00000490135 RBM25P49756 843 aaKnown RBP8.85□□□□□ -0.99
SYNE1-228ENST00000490135 CENPQQ7L2Z9 268 aaPredicted RBP8.85□□□□□ -0.99
SYNE1-228ENST00000490135 IPO7O95373 1038 aaKnown RBP8.85□□□□□ -0.99
SYNE1-228ENST00000490135 SRPK2P78362 688 aaKnown RBP8.85□□□□□ -0.99
SYNE1-228ENST00000490135 AKAP17AQ02040 695 aaKnown RBP8.85□□□□□ -0.99
SYNE1-228ENST00000490135 PCMTD1Q96MG8 357 aaPredicted RBP8.85□□□□□ -0.99
SYNE1-228ENST00000490135 KTN1Q86UP2 1357 aaKnown RBP8.84□□□□□ -0.99
SYNE1-228ENST00000490135 CCDC47Q96A33 483 aaKnown RBP8.84□□□□□ -0.99
SYNE1-228ENST00000490135 FOXD4L1Q9NU39 408 aa8.84□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms