RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 ROCK2O75116 1388 aaKnown RBP24.38■■□□□ 1.49
VIM-206ENST00000487938 ABCC2Q92887 1545 aa24.37■■□□□ 1.49
VIM-206ENST00000487938 RSPH4AQ5TD94 716 aa24.37■■□□□ 1.49
VIM-206ENST00000487938 PNISRQ8TF01 805 aaKnown RBP24.37■■□□□ 1.49
VIM-206ENST00000487938 PREX2Q70Z35 1606 aa24.37■■□□□ 1.49
VIM-206ENST00000487938 FAM135AQ9P2D6 1515 aa24.37■■□□□ 1.49
VIM-206ENST00000487938 SMG6Q86US8 1419 aaKnown RBP24.34■■□□□ 1.49
VIM-206ENST00000487938 NUDCQ9Y266 331 aa24.32■■□□□ 1.48
VIM-206ENST00000487938 SYCP2Q9BX26 1530 aa24.32■■□□□ 1.48
VIM-206ENST00000487938 CLASP1Q7Z460 1538 aa24.31■■□□□ 1.48
VIM-206ENST00000487938 MSH5O43196 834 aa24.31■■□□□ 1.48
VIM-206ENST00000487938 ARHGAP5Q13017 1502 aa24.31■■□□□ 1.48
VIM-206ENST00000487938 NBPF1Q3BBV0 1214 aa24.31■■□□□ 1.48
VIM-206ENST00000487938 CCDC144AA2RUR9 1427 aa24.31■■□□□ 1.48
VIM-206ENST00000487938 TTC37Q6PGP7 1564 aa24.3■■□□□ 1.48
VIM-206ENST00000487938 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP24.3■■□□□ 1.484e-7■■□□□ 11.4
VIM-206ENST00000487938 PRAG1Q86YV5 1406 aa24.25■■□□□ 1.47
VIM-206ENST00000487938 MYBBP1AQ9BQG0 1328 aaKnown RBP24.25■■□□□ 1.47
VIM-206ENST00000487938 PLA2R1Q13018 1463 aa24.25■■□□□ 1.47
VIM-206ENST00000487938 RALBP1Q15311 655 aa24.24■■□□□ 1.47
VIM-206ENST00000487938 PLEKHH2Q8IVE3 1493 aa24.23■■□□□ 1.47
VIM-206ENST00000487938 FANCIQ9NVI1 1328 aa24.22■■□□□ 1.47
VIM-206ENST00000487938 UHRF1BP1LA0JNW5 1464 aa24.22■■□□□ 1.47
VIM-206ENST00000487938 TRPM1Q7Z4N2 1603 aa24.21■■□□□ 1.47
VIM-206ENST00000487938 BRD4O60885 1362 aaPredicted RBP24.21■■□□□ 1.47
VIM-206ENST00000487938 MYO5CQ9NQX4 1742 aa24.2■■□□□ 1.46
VIM-206ENST00000487938 RNF123Q5XPI4 1314 aa24.19■■□□□ 1.46
VIM-206ENST00000487938 MAST1Q9Y2H9 1570 aa24.19■■□□□ 1.46
VIM-206ENST00000487938 LRPPRCP42704 1394 aaKnown RBP24.19■■□□□ 1.46
VIM-206ENST00000487938 A2MP01023 1474 aa24.18■■□□□ 1.46
VIM-206ENST00000487938 ZCCHC11Q5TAX3 1644 aaKnown RBP24.18■■□□□ 1.46
VIM-206ENST00000487938 UNC13BO14795 1591 aa24.18■■□□□ 1.46
VIM-206ENST00000487938 SALL2Q9Y467 1007 aaPredicted RBP24.17■■□□□ 1.46
VIM-206ENST00000487938 KTN1Q86UP2 1357 aaKnown RBP24.17■■□□□ 1.46
VIM-206ENST00000487938 E9PCH4 1651 aa24.16■■□□□ 1.46
VIM-206ENST00000487938 PLCH2O75038 1416 aa24.14■■□□□ 1.46
VIM-206ENST00000487938 PER1O15534 1290 aaPredicted RBP24.14■■□□□ 1.46
VIM-206ENST00000487938 CCDC136Q96JN2 1154 aa24.13■■□□□ 1.45
VIM-206ENST00000487938 NLRP13Q86W25 1043 aa24.12■■□□□ 1.45
VIM-206ENST00000487938 GPRASP1Q5JY77 1395 aa24.12■■□□□ 1.45
VIM-206ENST00000487938 CC2D1BQ5T0F9 858 aaKnown RBP24.12■■□□□ 1.45
VIM-206ENST00000487938 TESK2Q96S53 571 aa24.12■■□□□ 1.45
VIM-206ENST00000487938 DISP3Q9P2K9 1392 aa24.11■■□□□ 1.45
VIM-206ENST00000487938 IQGAP3Q86VI3 1631 aa24.11■■□□□ 1.45
VIM-206ENST00000487938 EFCAB2Q5VUJ9 269 aa24.11■■□□□ 1.45
VIM-206ENST00000487938 PLXNC1O60486 1568 aa24.1■■□□□ 1.45
VIM-206ENST00000487938 PARD3Q8TEW0 1356 aa24.1■■□□□ 1.45
VIM-206ENST00000487938 DUOX2Q9NRD8 1548 aa24.09■■□□□ 1.45
VIM-206ENST00000487938 PANK3Q9H999 370 aa24.08■■□□□ 1.45
VIM-206ENST00000487938 COL17A1Q9UMD9 1497 aaPredicted RBP24.05■■□□□ 1.44
VIM-206ENST00000487938 PRDM15P57071 1507 aaPredicted RBP24.05■■□□□ 1.44
VIM-206ENST00000487938 ERICH6Q7L0X2 663 aa24.05■■□□□ 1.44
VIM-206ENST00000487938 ERBINQ96RT1 1412 aa24.04■■□□□ 1.44
VIM-206ENST00000487938 TRAPPC8Q9Y2L5 1435 aa24.04■■□□□ 1.44
VIM-206ENST00000487938 TMF1P82094 1093 aa24.04■■□□□ 1.44
VIM-206ENST00000487938 ABCC1P33527 1531 aa24.02■■□□□ 1.44
VIM-206ENST00000487938 AFAP1Q8N556 730 aa24.01■■□□□ 1.43
VIM-206ENST00000487938 ATP10AO60312 1499 aa24.01■■□□□ 1.43
VIM-206ENST00000487938 MAGI2Q86UL8 1455 aa24■■□□□ 1.43
VIM-206ENST00000487938 RRP1P56182 461 aaKnown RBP24■■□□□ 1.43
VIM-206ENST00000487938 RCAN3Q9UKA8 241 aa23.99■■□□□ 1.43
VIM-206ENST00000487938 LAMC1P11047 1609 aa23.99■■□□□ 1.43
VIM-206ENST00000487938 CDCA7LQ96GN5 454 aa23.99■■□□□ 1.43
VIM-206ENST00000487938 SPAG9O60271 1321 aaKnown RBP23.98■■□□□ 1.43
VIM-206ENST00000487938 EIF2AK4Q9P2K8 1649 aaKnown RBP23.98■■□□□ 1.43
VIM-206ENST00000487938 WASHC2CQ9Y4E1 1318 aa23.98■■□□□ 1.43
VIM-206ENST00000487938 ARAP3Q8WWN8 1544 aa23.97■■□□□ 1.43
VIM-206ENST00000487938 WDR7Q9Y4E6 1490 aa23.96■■□□□ 1.43
VIM-206ENST00000487938 EXOC6Q8TAG9 804 aa23.96■■□□□ 1.43
VIM-206ENST00000487938 PDE3BQ13370 1112 aa23.94■■□□□ 1.42
VIM-206ENST00000487938 RTEL1-TNFRSF6BF6WH68 1400 aa23.9■■□□□ 1.42
VIM-206ENST00000487938 MYT1LQ9UL68 1186 aa23.88■■□□□ 1.41
VIM-206ENST00000487938 RNF17Q9BXT8 1623 aaKnown RBP23.86■■□□□ 1.41
VIM-206ENST00000487938 KNSTRNQ9Y448 316 aa23.86■■□□□ 1.41
VIM-206ENST00000487938 FANCAO15360 1455 aa23.85■■□□□ 1.41
VIM-206ENST00000487938 PLIN1O60240 522 aa23.85■■□□□ 1.41
VIM-206ENST00000487938 ADAMTS8Q9UP79 889 aa23.85■■□□□ 1.41
VIM-206ENST00000487938 ZFYVE16Q7Z3T8 1539 aa23.85■■□□□ 1.41
VIM-206ENST00000487938 MADDQ8WXG6 1647 aa23.84■■□□□ 1.41
VIM-206ENST00000487938 BLMP54132 1417 aaPredicted RBP23.84■■□□□ 1.41
VIM-206ENST00000487938 ABCA9Q8IUA7 1624 aa23.84■■□□□ 1.41
VIM-206ENST00000487938 KIF3BO15066 747 aa23.82■■□□□ 1.4
VIM-206ENST00000487938 ASXL2Q76L83 1435 aa23.82■■□□□ 1.4
VIM-206ENST00000487938 PPP2R1AP30153 589 aa23.81■■□□□ 1.4
VIM-206ENST00000487938 TRPM2O94759 1503 aa23.81■■□□□ 1.4
VIM-206ENST00000487938 OSCARQ8IYS5 282 aa23.81■■□□□ 1.4
VIM-206ENST00000487938 PTPRTO14522 1441 aa23.8■■□□□ 1.4
VIM-206ENST00000487938 NOP58Q9Y2X3 529 aaKnown RBP23.8■■□□□ 1.4
VIM-206ENST00000487938 CLTCL1P53675 1640 aa23.8■■□□□ 1.4
VIM-206ENST00000487938 PAK3O75914 559 aaPredicted RBP23.79■■□□□ 1.4
VIM-206ENST00000487938 AMER1Q5JTC6 1135 aaPredicted RBP23.79■■□□□ 1.4
VIM-206ENST00000487938 IQGAP1P46940 1657 aa23.78■■□□□ 1.4
VIM-206ENST00000487938 SPHKAPQ2M3C7 1700 aa23.78■■□□□ 1.4
VIM-206ENST00000487938 SCAF11Q99590 1463 aaKnown RBP23.78■■□□□ 1.4
VIM-206ENST00000487938 INSRP06213 1382 aa23.78■■□□□ 1.4
VIM-206ENST00000487938 ADGRL1O94910 1474 aa23.77■■□□□ 1.4
VIM-206ENST00000487938 KANK1Q14678 1352 aa23.77■■□□□ 1.4
VIM-206ENST00000487938 CEP152O94986 1710 aa23.77■■□□□ 1.4
VIM-206ENST00000487938 CDCA8Q53HL2 280 aa23.77■■□□□ 1.4
VIM-206ENST00000487938 ATP7AQ04656 1500 aa23.77■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms