RNA–Protein interactions for RNA: ENST00000487620.1

ZNF3-215, Transcript of zinc finger protein 3, human

TSL 2

Gene ZNF3, Length 2,660 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ZNF3-215	ENST00000487620	PLEKHD1	A6NEE1	506 aa		13.08	□□□□□ -0.32
ZNF3-215	ENST00000487620	EXOC6	Q8TAG9	804 aa		13.08	□□□□□ -0.32
ZNF3-215	ENST00000487620	NPM2	Q86SE8	214 aa	Known RBP	13.07	□□□□□ -0.32
ZNF3-215	ENST00000487620	CEP170	Q5SW79	1584 aa		13.07	□□□□□ -0.32
ZNF3-215	ENST00000487620	RCAN3	Q9UKA8	241 aa		13.06	□□□□□ -0.32
ZNF3-215	ENST00000487620		E9PCH4	1651 aa		13.06	□□□□□ -0.32
ZNF3-215	ENST00000487620	KTN1	Q86UP2	1357 aa	Known RBP	13.06	□□□□□ -0.32
ZNF3-215	ENST00000487620	CARMIL2	Q6F5E8	1435 aa		13.05	□□□□□ -0.32
ZNF3-215	ENST00000487620	HNRNPM	P52272	730 aa	Known RBP eCLIP	13.05	□□□□□ -0.32
ZNF3-215	ENST00000487620	RTL5	Q5HYW3	569 aa	Predicted RBP	13.05	□□□□□ -0.32
ZNF3-215	ENST00000487620	SHANK2	Q9UPX8	1470 aa		13.04	□□□□□ -0.32
ZNF3-215	ENST00000487620	NLRP13	Q86W25	1043 aa		13.04	□□□□□ -0.32
ZNF3-215	ENST00000487620	JPH4	Q96JJ6	628 aa		13.04	□□□□□ -0.32
ZNF3-215	ENST00000487620	KDM5D	Q9BY66	1539 aa		13.03	□□□□□ -0.32
ZNF3-215	ENST00000487620	RGL3	Q3MIN7	710 aa		13.03	□□□□□ -0.32
ZNF3-215	ENST00000487620	MAGI1	Q96QZ7	1491 aa	Predicted RBP	13.02	□□□□□ -0.32
ZNF3-215	ENST00000487620	ABCC10	Q5T3U5	1492 aa		13.02	□□□□□ -0.33
ZNF3-215	ENST00000487620	CDCA7L	Q96GN5	454 aa		13.01	□□□□□ -0.33
ZNF3-215	ENST00000487620	SYNJ2	O15056	1496 aa		13.01	□□□□□ -0.33
ZNF3-215	ENST00000487620	PARD3	Q8TEW0	1356 aa		13	□□□□□ -0.33
ZNF3-215	ENST00000487620	TCERG1	O14776	1098 aa	Known RBP	13	□□□□□ -0.33
ZNF3-215	ENST00000487620	NBPF1	Q3BBV0	1214 aa		13	□□□□□ -0.33
ZNF3-215	ENST00000487620	CC2D1B	Q5T0F9	858 aa	Known RBP	13	□□□□□ -0.33
ZNF3-215	ENST00000487620	TRPM1	Q7Z4N2	1603 aa		13	□□□□□ -0.33
ZNF3-215	ENST00000487620	ATP10B	O94823	1461 aa		12.99	□□□□□ -0.33
ZNF3-215	ENST00000487620	PDE3B	Q13370	1112 aa		12.99	□□□□□ -0.33
ZNF3-215	ENST00000487620	FAM135A	Q9P2D6	1515 aa		12.99	□□□□□ -0.33
ZNF3-215	ENST00000487620	CCDC144A	A2RUR9	1427 aa		12.99	□□□□□ -0.33
ZNF3-215	ENST00000487620	PTPRG	P23470	1445 aa		12.99	□□□□□ -0.33
ZNF3-215	ENST00000487620	PLIN1	O60240	522 aa		12.99	□□□□□ -0.33
ZNF3-215	ENST00000487620	PDE4A	P27815	886 aa		12.99	□□□□□ -0.33
ZNF3-215	ENST00000487620	ABCA8	O94911	1581 aa		12.98	□□□□□ -0.33
ZNF3-215	ENST00000487620	PRAG1	Q86YV5	1406 aa		12.98	□□□□□ -0.33
ZNF3-215	ENST00000487620	PER1	O15534	1290 aa	Predicted RBP	12.97	□□□□□ -0.33
ZNF3-215	ENST00000487620	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	12.97	□□□□□ -0.33	1e-7	■■□□□ 12.6
ZNF3-215	ENST00000487620	ERCC6	Q03468	1493 aa		12.96	□□□□□ -0.34
ZNF3-215	ENST00000487620	ARHGEF5	Q12774	1597 aa		12.96	□□□□□ -0.34
ZNF3-215	ENST00000487620	BACH2	Q9BYV9	841 aa		12.96	□□□□□ -0.34
ZNF3-215	ENST00000487620	LAS1L	Q9Y4W2	734 aa	Known RBP	12.96	□□□□□ -0.34
ZNF3-215	ENST00000487620	DISP3	Q9P2K9	1392 aa		12.95	□□□□□ -0.34
ZNF3-215	ENST00000487620	CCDC141	Q6ZP82	1450 aa		12.95	□□□□□ -0.34
ZNF3-215	ENST00000487620	PANK3	Q9H999	370 aa		12.94	□□□□□ -0.34
ZNF3-215	ENST00000487620	NUP160	Q12769	1436 aa		12.94	□□□□□ -0.34
ZNF3-215	ENST00000487620	SAMD9L	Q8IVG5	1584 aa		12.94	□□□□□ -0.34
ZNF3-215	ENST00000487620	SKAP1	Q86WV1	359 aa		12.94	□□□□□ -0.34
ZNF3-215	ENST00000487620	CDC42BPB	Q9Y5S2	1711 aa		12.93	□□□□□ -0.34
ZNF3-215	ENST00000487620	MS4A1	P11836	297 aa		12.93	□□□□□ -0.34
ZNF3-215	ENST00000487620	CRBN	Q96SW2	442 aa		12.93	□□□□□ -0.34
ZNF3-215	ENST00000487620	COL17A1	Q9UMD9	1497 aa	Predicted RBP	12.93	□□□□□ -0.34
ZNF3-215	ENST00000487620	MYO5C	Q9NQX4	1742 aa		12.92	□□□□□ -0.34
ZNF3-215	ENST00000487620	A2M	P01023	1474 aa		12.92	□□□□□ -0.34
ZNF3-215	ENST00000487620	TESK2	Q96S53	571 aa		12.92	□□□□□ -0.34
ZNF3-215	ENST00000487620	NEFM	P07197	916 aa		12.91	□□□□□ -0.34
ZNF3-215	ENST00000487620	BLM	P54132	1417 aa	Predicted RBP	12.9	□□□□□ -0.34
ZNF3-215	ENST00000487620	TMF1	P82094	1093 aa		12.9	□□□□□ -0.34
ZNF3-215	ENST00000487620	WASHC2C	Q9Y4E1	1318 aa		12.9	□□□□□ -0.34
ZNF3-215	ENST00000487620	GPRASP1	Q5JY77	1395 aa		12.9	□□□□□ -0.34
ZNF3-215	ENST00000487620	ERBIN	Q96RT1	1412 aa		12.9	□□□□□ -0.34
ZNF3-215	ENST00000487620	PRDM15	P57071	1507 aa	Predicted RBP	12.9	□□□□□ -0.34
ZNF3-215	ENST00000487620	PREX2	Q70Z35	1606 aa		12.9	□□□□□ -0.34
ZNF3-215	ENST00000487620	PLA2R1	Q13018	1463 aa		12.9	□□□□□ -0.35
ZNF3-215	ENST00000487620	SYCP2	Q9BX26	1530 aa		12.89	□□□□□ -0.35
ZNF3-215	ENST00000487620	C20orf194	Q5TEA3	1177 aa		12.88	□□□□□ -0.35
ZNF3-215	ENST00000487620	RSPH4A	Q5TD94	716 aa		12.88	□□□□□ -0.35
ZNF3-215	ENST00000487620	ADAMTS8	Q9UP79	889 aa		12.88	□□□□□ -0.35
ZNF3-215	ENST00000487620	LAMC1	P11047	1609 aa		12.87	□□□□□ -0.35
ZNF3-215	ENST00000487620	ZMYM4	Q5VZL5	1548 aa		12.87	□□□□□ -0.35
ZNF3-215	ENST00000487620	UNC13B	O14795	1591 aa		12.87	□□□□□ -0.35
ZNF3-215	ENST00000487620	EIF2AK4	Q9P2K8	1649 aa	Known RBP	12.86	□□□□□ -0.35
ZNF3-215	ENST00000487620	ARHGAP5	Q13017	1502 aa		12.86	□□□□□ -0.35
ZNF3-215	ENST00000487620	PLEKHH2	Q8IVE3	1493 aa		12.85	□□□□□ -0.35
ZNF3-215	ENST00000487620	WDR43	Q15061	677 aa	Known RBP eCLIP	12.85	□□□□□ -0.35
ZNF3-215	ENST00000487620	DNAJC5	Q9H3Z4	198 aa		12.85	□□□□□ -0.35
ZNF3-215	ENST00000487620	INSR	P06213	1382 aa		12.84	□□□□□ -0.35
ZNF3-215	ENST00000487620	PPM1G	O15355	546 aa	Predicted RBP	12.84	□□□□□ -0.35
ZNF3-215	ENST00000487620	USP35	Q9P2H5	1018 aa		12.84	□□□□□ -0.35
ZNF3-215	ENST00000487620	IQGAP3	Q86VI3	1631 aa		12.84	□□□□□ -0.35
ZNF3-215	ENST00000487620	DDRGK1	Q96HY6	314 aa		12.84	□□□□□ -0.35
ZNF3-215	ENST00000487620	KNSTRN	Q9Y448	316 aa		12.84	□□□□□ -0.35
ZNF3-215	ENST00000487620	TTC37	Q6PGP7	1564 aa		12.83	□□□□□ -0.36
ZNF3-215	ENST00000487620	PLEKHH1	Q9ULM0	1364 aa		12.82	□□□□□ -0.36
ZNF3-215	ENST00000487620	PPP2R1A	P30153	589 aa		12.82	□□□□□ -0.36
ZNF3-215	ENST00000487620	MAST1	Q9Y2H9	1570 aa		12.81	□□□□□ -0.36
ZNF3-215	ENST00000487620	IL27	Q8NEV9	243 aa		12.81	□□□□□ -0.36
ZNF3-215	ENST00000487620	MAGI2	Q86UL8	1455 aa		12.81	□□□□□ -0.36
ZNF3-215	ENST00000487620	SLC4A3	P48751	1232 aa		12.81	□□□□□ -0.36
ZNF3-215	ENST00000487620	DUSP27	Q5VZP5	1158 aa		12.81	□□□□□ -0.36
ZNF3-215	ENST00000487620	KDM2B	Q8NHM5	1336 aa		12.81	□□□□□ -0.36
ZNF3-215	ENST00000487620	CENPQ	Q7L2Z9	268 aa	Predicted RBP	12.8	□□□□□ -0.36
ZNF3-215	ENST00000487620	DAXX	Q9UER7	740 aa	Predicted RBP	12.8	□□□□□ -0.36
ZNF3-215	ENST00000487620	RNF17	Q9BXT8	1623 aa	Known RBP	12.8	□□□□□ -0.36
ZNF3-215	ENST00000487620	GEMIN5	Q8TEQ6	1508 aa	Known RBP eCLIP	12.8	□□□□□ -0.36
ZNF3-215	ENST00000487620	PLXNC1	O60486	1568 aa		12.79	□□□□□ -0.36
ZNF3-215	ENST00000487620	GOLGA2	Q08379	1002 aa		12.79	□□□□□ -0.36
ZNF3-215	ENST00000487620	WDR7	Q9Y4E6	1490 aa		12.79	□□□□□ -0.36
ZNF3-215	ENST00000487620	RTN4	Q9NQC3	1192 aa	Known RBP	12.79	□□□□□ -0.36
ZNF3-215	ENST00000487620	CCDC146	Q8IYE0	955 aa		12.78	□□□□□ -0.36
ZNF3-215	ENST00000487620	DUOX2	Q9NRD8	1548 aa		12.78	□□□□□ -0.36
ZNF3-215	ENST00000487620	GOLGA6L2	Q8N9W4	650 aa	Predicted RBP	12.77	□□□□□ -0.36
ZNF3-215	ENST00000487620	RGS3	P49796	1198 aa		12.77	□□□□□ -0.37

Retrieved 100 of 20,778 RNA–protein pairs in 64.2 ms