RNA–Protein interactions for RNA: ENST00000486016.1

GCFC2-209, Transcript of GC-rich sequence DNA-binding factor 2, humanhuman

TSL 3

Gene GCFC2, Length 595 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GCFC2-209ENST00000486016 ZDHHC16Q969W1 377 aa12.04□□□□□ -0.48
GCFC2-209ENST00000486016 CFAP44Q96MT7 982 aa12.03□□□□□ -0.48
GCFC2-209ENST00000486016 ADAM33Q9BZ11 813 aa12.02□□□□□ -0.49
GCFC2-209ENST00000486016 PCDHGA10Q9Y5H3 936 aa12.02□□□□□ -0.49
GCFC2-209ENST00000486016 DPYSL4O14531 572 aa12□□□□□ -0.49
GCFC2-209ENST00000486016 PPP1R3GB7ZBB8 358 aa11.96□□□□□ -0.49
GCFC2-209ENST00000486016 PHF14O94880 888 aa11.96□□□□□ -0.49
GCFC2-209ENST00000486016 ITGBL1O95965 494 aaPredicted RBP11.96□□□□□ -0.49
GCFC2-209ENST00000486016 ANKK1Q8NFD2 765 aa11.95□□□□□ -0.5
GCFC2-209ENST00000486016 RABGEF1Q9UJ41 708 aa11.95□□□□□ -0.5
GCFC2-209ENST00000486016 Q6ZNB5 142 aa11.93□□□□□ -0.5
GCFC2-209ENST00000486016 ARIH1Q9Y4X5 557 aaPredicted RBP11.93□□□□□ -0.5
GCFC2-209ENST00000486016 PROX2Q3B8N5 592 aa11.92□□□□□ -0.5
GCFC2-209ENST00000486016 TYW1BQ6NUM6 668 aa11.92□□□□□ -0.5
GCFC2-209ENST00000486016 BCAMP50895 628 aa11.91□□□□□ -0.5
GCFC2-209ENST00000486016 PDIA6Q15084 440 aa11.91□□□□□ -0.5
GCFC2-209ENST00000486016 E2F4Q16254 413 aa11.91□□□□□ -0.5
GCFC2-209ENST00000486016 FBXW7Q969H0 707 aa11.91□□□□□ -0.5
GCFC2-209ENST00000486016 COL9A1P20849 921 aa11.89□□□□□ -0.51
GCFC2-209ENST00000486016 NYAP1Q6ZVC0 841 aa11.89□□□□□ -0.51
GCFC2-209ENST00000486016 LAPTM4BQ86VI4 370 aa11.89□□□□□ -0.51
GCFC2-209ENST00000486016 EPAS1Q99814 870 aa11.89□□□□□ -0.51
GCFC2-209ENST00000486016 TSHZ2Q9NRE2 1034 aa11.87□□□□□ -0.51
GCFC2-209ENST00000486016 SOWAHBA6NEL2 793 aa11.86□□□□□ -0.51
GCFC2-209ENST00000486016 DDX12PQ92771 950 aa11.86□□□□□ -0.51
GCFC2-209ENST00000486016 SPDYE16A6NNV3 312 aaPredicted RBP11.85□□□□□ -0.51
GCFC2-209ENST00000486016 C6orf132Q5T0Z8 1188 aa11.85□□□□□ -0.51
GCFC2-209ENST00000486016 WDR70Q9NW82 654 aa11.84□□□□□ -0.51
GCFC2-209ENST00000486016 ONECUT3O60422 494 aaPredicted RBP11.83□□□□□ -0.52
GCFC2-209ENST00000486016 KCNC4Q03721 635 aa11.82□□□□□ -0.52
GCFC2-209ENST00000486016 ZFRQ96KR1 1074 aaKnown RBP11.82□□□□□ -0.52
GCFC2-209ENST00000486016 WBP1LQ9NX94 342 aa11.82□□□□□ -0.52
GCFC2-209ENST00000486016 KIAA1468Q9P260 1216 aa11.82□□□□□ -0.52
GCFC2-209ENST00000486016 PRIM1P49642 420 aaKnown RBP11.79□□□□□ -0.52
GCFC2-209ENST00000486016 EN1Q05925 392 aaPredicted RBP11.78□□□□□ -0.52
GCFC2-209ENST00000486016 RBM33Q96EV2 1170 aaKnown RBP11.78□□□□□ -0.52
GCFC2-209ENST00000486016 SEPT9Q9UHD8 586 aaPredicted RBP11.78□□□□□ -0.52
GCFC2-209ENST00000486016 NBR1Q14596 966 aa11.77□□□□□ -0.53
GCFC2-209ENST00000486016 TSR1Q2NL82 804 aaKnown RBP11.75□□□□□ -0.53
GCFC2-209ENST00000486016 LAPTM4AQ15012 233 aa11.74□□□□□ -0.53
GCFC2-209ENST00000486016 FAM98CQ17RN3 349 aaKnown RBP11.73□□□□□ -0.53
GCFC2-209ENST00000486016 TRIM6-TRIM34B2RNG4 842 aa11.72□□□□□ -0.53
GCFC2-209ENST00000486016 OSBPP22059 807 aa11.72□□□□□ -0.53
GCFC2-209ENST00000486016 TSR3Q9UJK0 312 aaKnown RBP11.72□□□□□ -0.53
GCFC2-209ENST00000486016 MAP3K7O43318 606 aa11.71□□□□□ -0.53
GCFC2-209ENST00000486016 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.71□□□□□ -0.53
GCFC2-209ENST00000486016 HPS5Q9UPZ3 1129 aa11.71□□□□□ -0.53
GCFC2-209ENST00000486016 GRXCR2A6NFK2 248 aa11.7□□□□□ -0.54
GCFC2-209ENST00000486016 LCE2BO14633 110 aa11.7□□□□□ -0.54
GCFC2-209ENST00000486016 GFRA3O60609 400 aa11.7□□□□□ -0.54
GCFC2-209ENST00000486016 TRAF7Q6Q0C0 670 aa11.69□□□□□ -0.54
GCFC2-209ENST00000486016 KCNV2Q8TDN2 545 aa11.69□□□□□ -0.54
GCFC2-209ENST00000486016 LRCH3Q96II8 777 aa11.69□□□□□ -0.54
GCFC2-209ENST00000486016 ARHGEF1Q92888 912 aaKnown RBP11.68□□□□□ -0.54
GCFC2-209ENST00000486016 TSKSQ9UJT2 592 aa11.68□□□□□ -0.54
GCFC2-209ENST00000486016 PLCB2Q00722 1185 aa11.65□□□□□ -0.54
GCFC2-209ENST00000486016 FAM198AQ9UFP1 575 aa11.65□□□□□ -0.54
GCFC2-209ENST00000486016 CDHR5Q9HBB8 845 aa11.63□□□□□ -0.55
GCFC2-209ENST00000486016 C3orf80F5H4A9 247 aa11.62□□□□□ -0.55
GCFC2-209ENST00000486016 PRSS12P56730 875 aa11.62□□□□□ -0.55
GCFC2-209ENST00000486016 CDCA7LQ96GN5 454 aa11.62□□□□□ -0.55
GCFC2-209ENST00000486016 CERKQ8TCT0 537 aa11.61□□□□□ -0.55
GCFC2-209ENST00000486016 NPDC1Q9NQX5 325 aaPredicted RBP11.61□□□□□ -0.55
GCFC2-209ENST00000486016 MLLT3P42568 568 aaPredicted RBP11.6□□□□□ -0.55
GCFC2-209ENST00000486016 PPP4CP60510 307 aa11.6□□□□□ -0.55
GCFC2-209ENST00000486016 PACS2Q86VP3 889 aa11.6□□□□□ -0.55
GCFC2-209ENST00000486016 PRKD2Q9BZL6 878 aa11.6□□□□□ -0.55
GCFC2-209ENST00000486016 TJAP1Q5JTD0 557 aa11.57□□□□□ -0.56
GCFC2-209ENST00000486016 TTC13Q8NBP0 860 aa11.57□□□□□ -0.56
GCFC2-209ENST00000486016 RBM27Q9P2N5 1060 aaKnown RBP11.56□□□□□ -0.56
GCFC2-209ENST00000486016 NRG2O14511 850 aaPredicted RBP11.55□□□□□ -0.56
GCFC2-209ENST00000486016 SMAPO00193 183 aa11.53□□□□□ -0.56
GCFC2-209ENST00000486016 PPP1R18Q6NYC8 613 aa11.53□□□□□ -0.56
GCFC2-209ENST00000486016 SAMD7Q7Z3H4 446 aa11.52□□□□□ -0.57
GCFC2-209ENST00000486016 TATDN2Q93075 761 aa11.52□□□□□ -0.57
GCFC2-209ENST00000486016 IL21Q9HBE4 155 aa11.52□□□□□ -0.57
GCFC2-209ENST00000486016 V9GY48 417 aaPredicted RBP11.52□□□□□ -0.57
GCFC2-209ENST00000486016 P3H3Q8IVL6 736 aa11.51□□□□□ -0.57
GCFC2-209ENST00000486016 MTRQ99707 1265 aa11.51□□□□□ -0.57
GCFC2-209ENST00000486016 ZNF787Q6DD87 383 aa11.49□□□□□ -0.57
GCFC2-209ENST00000486016 NBPF26B4DH59 902 aa11.48□□□□□ -0.57
GCFC2-209ENST00000486016 PADI6Q6TGC4 694 aa11.48□□□□□ -0.57
GCFC2-209ENST00000486016 PNMA3Q9UL41 463 aa11.48□□□□□ -0.57
GCFC2-209ENST00000486016 SEMA3EO15041 775 aa11.47□□□□□ -0.57
GCFC2-209ENST00000486016 NUDT18Q6ZVK8 323 aa11.47□□□□□ -0.57
GCFC2-209ENST00000486016 ZNF516Q92618 1163 aa11.47□□□□□ -0.57
GCFC2-209ENST00000486016 PTGDRQ13258 359 aa11.46□□□□□ -0.57
GCFC2-209ENST00000486016 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.46□□□□□ -0.57
GCFC2-209ENST00000486016 EYA1Q99502 592 aa11.44□□□□□ -0.58
GCFC2-209ENST00000486016 PDZRN3Q9UPQ7 1066 aa11.44□□□□□ -0.58
GCFC2-209ENST00000486016 KDM2AQ9Y2K7 1162 aa11.43□□□□□ -0.58
GCFC2-209ENST00000486016 RNF40O75150 1001 aa11.42□□□□□ -0.58
GCFC2-209ENST00000486016 NKX2-3Q8TAU0 364 aa11.41□□□□□ -0.58
GCFC2-209ENST00000486016 TESPA1A2RU30 521 aaPredicted RBP11.4□□□□□ -0.58
GCFC2-209ENST00000486016 APLP1P51693 650 aa11.39□□□□□ -0.59
GCFC2-209ENST00000486016 ZNF775Q96BV0 537 aaPredicted RBP11.39□□□□□ -0.59
GCFC2-209ENST00000486016 HDGFP51858 240 aaKnown RBP11.38□□□□□ -0.59
GCFC2-209ENST00000486016 HAP1P54257 671 aaPredicted RBP11.38□□□□□ -0.59
GCFC2-209ENST00000486016 NECTIN2Q92692 538 aa11.38□□□□□ -0.59
GCFC2-209ENST00000486016 GGCXP38435 758 aa11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms