RNA–Protein interactions for RNA: ENST00000486016.1

GCFC2-209, Transcript of GC-rich sequence DNA-binding factor 2, humanhuman

TSL 3

Gene GCFC2, Length 595 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GCFC2-209ENST00000486016 AEBP2Q6ZN18 517 aaPredicted RBP30.26■■■□□ 2.43
GCFC2-209ENST00000486016 CHIC1Q5VXU3 224 aa28.32■■■□□ 2.12
GCFC2-209ENST00000486016 SENP3Q9H4L4 574 aaPredicted RBP25.85■■□□□ 1.73
GCFC2-209ENST00000486016 PHF23Q9BUL5 403 aaPredicted RBP25.49■■□□□ 1.67
GCFC2-209ENST00000486016 FOXD1Q16676 465 aa24.18■■□□□ 1.46
GCFC2-209ENST00000486016 POTEDQ86YR6 584 aa22.96■■□□□ 1.27
GCFC2-209ENST00000486016 MSH5O43196 834 aa22.75■■□□□ 1.23
GCFC2-209ENST00000486016 PIAS4Q8N2W9 510 aaPredicted RBP22.5■■□□□ 1.19
GCFC2-209ENST00000486016 PLPPR3Q6T4P5 718 aa22.48■■□□□ 1.19
GCFC2-209ENST00000486016 PPP6R1Q9UPN7 881 aa22.3■■□□□ 1.16
GCFC2-209ENST00000486016 ADRA2BP18089 450 aa22.22■■□□□ 1.15
GCFC2-209ENST00000486016 MAPK8IP2Q13387 824 aaPredicted RBP20.55■□□□□ 0.88
GCFC2-209ENST00000486016 DMRT2Q9Y5R5 561 aa20.43■□□□□ 0.86
GCFC2-209ENST00000486016 SCAF1Q9H7N4 1312 aaKnown RBP20.31■□□□□ 0.84
GCFC2-209ENST00000486016 CACNB1Q02641 598 aaPredicted RBP19.85■□□□□ 0.77
GCFC2-209ENST00000486016 DCAF8L1A6NGE4 600 aa19.72■□□□□ 0.75
GCFC2-209ENST00000486016 PPP4R3CPQ6ZMV5 832 aa19.63■□□□□ 0.73
GCFC2-209ENST00000486016 HOXD11P31277 338 aaPredicted RBP19.53■□□□□ 0.72
GCFC2-209ENST00000486016 RNF39Q9H2S5 420 aa19.38■□□□□ 0.69
GCFC2-209ENST00000486016 CNKSR2Q8WXI2 1034 aa19.37■□□□□ 0.69
GCFC2-209ENST00000486016 RNF216Q9NWF9 866 aaPredicted RBP19.29■□□□□ 0.68
GCFC2-209ENST00000486016 C1QBPQ07021 282 aaKnown RBP19.06■□□□□ 0.64
GCFC2-209ENST00000486016 DNAJC5BQ9UF47 199 aa18.99■□□□□ 0.63
GCFC2-209ENST00000486016 NCBP3Q53F19 620 aaKnown RBP18.81■□□□□ 0.6
GCFC2-209ENST00000486016 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.65■□□□□ 0.58
GCFC2-209ENST00000486016 NPM3O75607 178 aaKnown RBP18.49■□□□□ 0.55
GCFC2-209ENST00000486016 KCNA4P22459 653 aa18.29■□□□□ 0.52
GCFC2-209ENST00000486016 U3KPZ7 1027 aaPredicted RBP18.18■□□□□ 0.5
GCFC2-209ENST00000486016 CAPN15O75808 1086 aa18.08■□□□□ 0.48
GCFC2-209ENST00000486016 SPINK5Q9NQ38 1064 aaPredicted RBP18.08■□□□□ 0.48
GCFC2-209ENST00000486016 DSG3P32926 999 aa18.03■□□□□ 0.48
GCFC2-209ENST00000486016 POTEHQ6S545 545 aa17.91■□□□□ 0.46
GCFC2-209ENST00000486016 SLC4A2P04920 1241 aa17.75■□□□□ 0.43
GCFC2-209ENST00000486016 TRHP20396 242 aaPredicted RBP17.7■□□□□ 0.42
GCFC2-209ENST00000486016 APLP2Q06481 763 aa17.69■□□□□ 0.42
GCFC2-209ENST00000486016 ABCB7O75027 752 aa17.64■□□□□ 0.41
GCFC2-209ENST00000486016 ZNF219Q9P2Y4 722 aaPredicted RBP17.6■□□□□ 0.41
GCFC2-209ENST00000486016 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.57■□□□□ 0.4
GCFC2-209ENST00000486016 HNRNPUL2Q1KMD3 747 aaKnown RBP17.57■□□□□ 0.4
GCFC2-209ENST00000486016 SAMD1Q6SPF0 538 aaPredicted RBP17.44■□□□□ 0.38
GCFC2-209ENST00000486016 SLC4A1APQ9BWU0 796 aaKnown RBP17.26■□□□□ 0.35
GCFC2-209ENST00000486016 RBM42Q9BTD8 480 aaKnown RBP17.21■□□□□ 0.35
GCFC2-209ENST00000486016 MYCNP04198 464 aaPredicted RBP17.15■□□□□ 0.34
GCFC2-209ENST00000486016 POLA2Q14181 598 aa17.1■□□□□ 0.33
GCFC2-209ENST00000486016 CHRDL2Q6WN34 429 aa17.01■□□□□ 0.31
GCFC2-209ENST00000486016 FOXD4L1Q9NU39 408 aa16.95■□□□□ 0.3
GCFC2-209ENST00000486016 ZBTB22O15209 634 aa16.88■□□□□ 0.29
GCFC2-209ENST00000486016 ATF5Q9Y2D1 282 aaPredicted RBP16.77■□□□□ 0.28
GCFC2-209ENST00000486016 ZBTB12Q9Y330 459 aaPredicted RBP16.75■□□□□ 0.27
GCFC2-209ENST00000486016 AKT1S1Q96B36 256 aa16.72■□□□□ 0.27
GCFC2-209ENST00000486016 SP7Q8TDD2 431 aaPredicted RBP16.59■□□□□ 0.25
GCFC2-209ENST00000486016 REM2Q8IYK8 340 aaPredicted RBP16.58■□□□□ 0.24
GCFC2-209ENST00000486016 OSCARQ8IYS5 282 aa16.57■□□□□ 0.24
GCFC2-209ENST00000486016 PIP4P2Q8N4L2 257 aa16.52■□□□□ 0.24
GCFC2-209ENST00000486016 ATXN8OSP0DMR3 200 aa16.43■□□□□ 0.22
GCFC2-209ENST00000486016 PITPNM1O00562 1244 aa16.41■□□□□ 0.22
GCFC2-209ENST00000486016 HAX1O00165 279 aa16.38■□□□□ 0.21
GCFC2-209ENST00000486016 FXR2P51116 673 aaKnown RBP eCLIP16.33■□□□□ 0.2
GCFC2-209ENST00000486016 CSRNP3Q8WYN3 585 aa16.31■□□□□ 0.2
GCFC2-209ENST00000486016 SPDYE2BA6NHP3 402 aa16.18■□□□□ 0.18
GCFC2-209ENST00000486016 SPDYE6P0CI01 402 aa16.18■□□□□ 0.18
GCFC2-209ENST00000486016 SPDYE2Q495Y8 402 aa16.18■□□□□ 0.18
GCFC2-209ENST00000486016 FBLN2P98095 1184 aa16.16■□□□□ 0.18
GCFC2-209ENST00000486016 EVX2Q03828 476 aa16.13■□□□□ 0.17
GCFC2-209ENST00000486016 EHMT2Q96KQ7 1210 aa16.12■□□□□ 0.17
GCFC2-209ENST00000486016 CLEC11AQ9Y240 323 aa16.03■□□□□ 0.16
GCFC2-209ENST00000486016 PRKAR2AP13861 404 aaKnown RBP16■□□□□ 0.15
GCFC2-209ENST00000486016 SPDYE1Q8NFV5 336 aaPredicted RBP15.98■□□□□ 0.15
GCFC2-209ENST00000486016 MKRN4PQ13434 485 aaPredicted RBP15.94■□□□□ 0.14
GCFC2-209ENST00000486016 ZNF692Q9BU19 519 aaPredicted RBP15.92■□□□□ 0.14
GCFC2-209ENST00000486016 SSUH2Q9Y2M2 353 aa15.91■□□□□ 0.14
GCFC2-209ENST00000486016 C19orf67A6NJJ6 358 aa15.82■□□□□ 0.12
GCFC2-209ENST00000486016 CHADLQ6NUI6 762 aa15.77■□□□□ 0.12
GCFC2-209ENST00000486016 GABBR2O75899 941 aa15.73■□□□□ 0.11
GCFC2-209ENST00000486016 PRR29P0C7W0 189 aa15.67■□□□□ 0.1
GCFC2-209ENST00000486016 PABPN1Q86U42 306 aaKnown RBP eCLIP15.67■□□□□ 0.1
GCFC2-209ENST00000486016 LHX8Q68G74 356 aa15.57■□□□□ 0.08
GCFC2-209ENST00000486016 CD44P16070 742 aaKnown RBP15.47■□□□□ 0.07
GCFC2-209ENST00000486016 FARP1Q9Y4F1 1045 aaPredicted RBP15.44■□□□□ 0.06
GCFC2-209ENST00000486016 POTEIP0CG38 1075 aa15.38■□□□□ 0.05
GCFC2-209ENST00000486016 CLCN6P51797 869 aa15.35■□□□□ 0.05
GCFC2-209ENST00000486016 DCBLD2Q96PD2 775 aa15.23■□□□□ 0.03
GCFC2-209ENST00000486016 ZRANB1Q9UGI0 708 aa15.2■□□□□ 0.02
GCFC2-209ENST00000486016 SPDYE4A6NLX3 237 aa15.19■□□□□ 0.02
GCFC2-209ENST00000486016 STAG3Q9UJ98 1225 aa15.19■□□□□ 0.02
GCFC2-209ENST00000486016 ZNF579Q8NAF0 562 aaKnown RBP15.17■□□□□ 0.02
GCFC2-209ENST00000486016 CREBZFQ9NS37 354 aa15.16■□□□□ 0.02
GCFC2-209ENST00000486016 GALR2O43603 387 aaPredicted RBP15.06■□□□□ 0
GCFC2-209ENST00000486016 PROM2Q8N271 834 aa14.99□□□□□ -0.01
GCFC2-209ENST00000486016 PLSCR2Q9NRY7 297 aa14.98□□□□□ -0.01
GCFC2-209ENST00000486016 PAK3O75914 559 aaPredicted RBP14.97□□□□□ -0.01
GCFC2-209ENST00000486016 PHF12Q96QT6 1004 aa14.95□□□□□ -0.02
GCFC2-209ENST00000486016 NPM1P06748 294 aaKnown RBP eCLIP14.9□□□□□ -0.02
GCFC2-209ENST00000486016 OTUD5Q96G74 571 aa14.89□□□□□ -0.03
GCFC2-209ENST00000486016 POTEB2H3BUK9 544 aa14.88□□□□□ -0.03
GCFC2-209ENST00000486016 MNX1P50219 401 aaPredicted RBP14.84□□□□□ -0.03
GCFC2-209ENST00000486016 PELP1Q8IZL8 1130 aaKnown RBP14.81□□□□□ -0.04
GCFC2-209ENST00000486016 MS4A3Q96HJ5 214 aa14.72□□□□□ -0.05
GCFC2-209ENST00000486016 POTEMA6NI47 508 aa14.69□□□□□ -0.06
GCFC2-209ENST00000486016 FKBP8Q14318 412 aa14.68□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 103.1 ms