RNA–Protein interactions for RNA: ENST00000482590.1

CLK1-212, Transcript of CDC like kinase 1, humanhuman

TSL 2

Gene CLK1, Length 626 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-212ENST00000482590 FBXW7Q969H0 707 aa13.8□□□□□ -0.2
CLK1-212ENST00000482590 GOLGA8CPA6NN73 597 aa13.78□□□□□ -0.2
CLK1-212ENST00000482590 PROX2Q3B8N5 592 aa13.78□□□□□ -0.2
CLK1-212ENST00000482590 WNT2BQ93097 391 aa13.78□□□□□ -0.2
CLK1-212ENST00000482590 NBPF3Q9H094 633 aa13.78□□□□□ -0.2
CLK1-212ENST00000482590 RABGEF1Q9UJ41 708 aa13.75□□□□□ -0.21
CLK1-212ENST00000482590 SPRYD3Q8NCJ5 442 aa13.73□□□□□ -0.21
CLK1-212ENST00000482590 EPAS1Q99814 870 aa13.73□□□□□ -0.21
CLK1-212ENST00000482590 C6orf132Q5T0Z8 1188 aa13.71□□□□□ -0.21
CLK1-212ENST00000482590 AMER1Q5JTC6 1135 aaPredicted RBP13.69□□□□□ -0.22
CLK1-212ENST00000482590 DDX12PQ92771 950 aa13.69□□□□□ -0.22
CLK1-212ENST00000482590 RBM33Q96EV2 1170 aaKnown RBP13.67□□□□□ -0.22
CLK1-212ENST00000482590 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.67□□□□□ -0.22
CLK1-212ENST00000482590 KIAA1468Q9P260 1216 aa13.67□□□□□ -0.22
CLK1-212ENST00000482590 RTN4Q9NQC3 1192 aaKnown RBP13.66□□□□□ -0.22
CLK1-212ENST00000482590 PDIA6Q15084 440 aa13.64□□□□□ -0.23
CLK1-212ENST00000482590 IFFO2Q5TF58 517 aa13.64□□□□□ -0.23
CLK1-212ENST00000482590 ANKK1Q8NFD2 765 aa13.64□□□□□ -0.23
CLK1-212ENST00000482590 ONECUT3O60422 494 aaPredicted RBP13.63□□□□□ -0.23
CLK1-212ENST00000482590 LAPTM4BQ86VI4 370 aa13.63□□□□□ -0.23
CLK1-212ENST00000482590 TRIM6-TRIM34B2RNG4 842 aa13.61□□□□□ -0.23
CLK1-212ENST00000482590 BCAMP50895 628 aa13.6□□□□□ -0.23
CLK1-212ENST00000482590 PAXIP1Q6ZW49 1069 aaPredicted RBP13.6□□□□□ -0.23
CLK1-212ENST00000482590 ZFRQ96KR1 1074 aaKnown RBP13.6□□□□□ -0.23
CLK1-212ENST00000482590 EN1Q05925 392 aaPredicted RBP13.59□□□□□ -0.23
CLK1-212ENST00000482590 NBR1Q14596 966 aa13.59□□□□□ -0.23
CLK1-212ENST00000482590 CFAP44Q96MT7 982 aa13.59□□□□□ -0.23
CLK1-212ENST00000482590 SEPT9Q9UHD8 586 aaPredicted RBP13.59□□□□□ -0.23
CLK1-212ENST00000482590 SOWAHBA6NEL2 793 aa13.58□□□□□ -0.24
CLK1-212ENST00000482590 SPDYE16A6NNV3 312 aaPredicted RBP13.58□□□□□ -0.24
CLK1-212ENST00000482590 E2F4Q16254 413 aa13.58□□□□□ -0.24
CLK1-212ENST00000482590 TSR1Q2NL82 804 aaKnown RBP13.57□□□□□ -0.24
CLK1-212ENST00000482590 MAP3K7O43318 606 aa13.56□□□□□ -0.24
CLK1-212ENST00000482590 A0A0G2JS52 829 aa13.53□□□□□ -0.24
CLK1-212ENST00000482590 FAM98CQ17RN3 349 aaKnown RBP13.53□□□□□ -0.24
CLK1-212ENST00000482590 ARIH1Q9Y4X5 557 aaPredicted RBP13.53□□□□□ -0.24
CLK1-212ENST00000482590 PRIM1P49642 420 aaKnown RBP13.52□□□□□ -0.25
CLK1-212ENST00000482590 TSKSQ9UJT2 592 aa13.52□□□□□ -0.25
CLK1-212ENST00000482590 WDR70Q9NW82 654 aa13.51□□□□□ -0.25
CLK1-212ENST00000482590 WBP1LQ9NX94 342 aa13.51□□□□□ -0.25
CLK1-212ENST00000482590 ITGBL1O95965 494 aaPredicted RBP13.5□□□□□ -0.25
CLK1-212ENST00000482590 RGS20O76081 388 aa13.49□□□□□ -0.25
CLK1-212ENST00000482590 NYAP1Q6ZVC0 841 aa13.48□□□□□ -0.25
CLK1-212ENST00000482590 GRXCR2A6NFK2 248 aa13.47□□□□□ -0.25
CLK1-212ENST00000482590 PACS2Q86VP3 889 aa13.47□□□□□ -0.25
CLK1-212ENST00000482590 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.46□□□□□ -0.25
CLK1-212ENST00000482590 CDCA7LQ96GN5 454 aa13.45□□□□□ -0.26
CLK1-212ENST00000482590 LRCH3Q96II8 777 aa13.45□□□□□ -0.26
CLK1-212ENST00000482590 FAM198AQ9UFP1 575 aa13.44□□□□□ -0.26
CLK1-212ENST00000482590 PRSS12P56730 875 aa13.43□□□□□ -0.26
CLK1-212ENST00000482590 TSR3Q9UJK0 312 aaKnown RBP13.43□□□□□ -0.26
CLK1-212ENST00000482590 HPS5Q9UPZ3 1129 aa13.43□□□□□ -0.26
CLK1-212ENST00000482590 OSBPP22059 807 aa13.42□□□□□ -0.26
CLK1-212ENST00000482590 SMAPO00193 183 aa13.41□□□□□ -0.26
CLK1-212ENST00000482590 C3orf80F5H4A9 247 aa13.4□□□□□ -0.26
CLK1-212ENST00000482590 CERKQ8TCT0 537 aa13.4□□□□□ -0.26
CLK1-212ENST00000482590 CDHR5Q9HBB8 845 aa13.39□□□□□ -0.27
CLK1-212ENST00000482590 KCNC4Q03721 635 aa13.36□□□□□ -0.27
CLK1-212ENST00000482590 SAMD7Q7Z3H4 446 aa13.35□□□□□ -0.27
CLK1-212ENST00000482590 TATDN2Q93075 761 aa13.35□□□□□ -0.27
CLK1-212ENST00000482590 NBPF26B4DH59 902 aa13.33□□□□□ -0.28
CLK1-212ENST00000482590 PPP4CP60510 307 aa13.33□□□□□ -0.28
CLK1-212ENST00000482590 IRX2Q9BZI1 471 aaPredicted RBP13.33□□□□□ -0.28
CLK1-212ENST00000482590 PNMA3Q9UL41 463 aa13.33□□□□□ -0.28
CLK1-212ENST00000482590 RB1CC1Q8TDY2 1594 aa13.32□□□□□ -0.28
CLK1-212ENST00000482590 NPDC1Q9NQX5 325 aaPredicted RBP13.3□□□□□ -0.28
CLK1-212ENST00000482590 TSHZ2Q9NRE2 1034 aa13.3□□□□□ -0.28
CLK1-212ENST00000482590 RBM27Q9P2N5 1060 aaKnown RBP13.3□□□□□ -0.28
CLK1-212ENST00000482590 NUDT18Q6ZVK8 323 aa13.29□□□□□ -0.28
CLK1-212ENST00000482590 TTC13Q8NBP0 860 aa13.27□□□□□ -0.29
CLK1-212ENST00000482590 TJAP1Q5JTD0 557 aa13.25□□□□□ -0.29
CLK1-212ENST00000482590 PADI6Q6TGC4 694 aa13.24□□□□□ -0.29
CLK1-212ENST00000482590 MLLT3P42568 568 aaPredicted RBP13.23□□□□□ -0.29
CLK1-212ENST00000482590 ARHGEF1Q92888 912 aaKnown RBP13.23□□□□□ -0.29
CLK1-212ENST00000482590 KCNV2Q8TDN2 545 aa13.21□□□□□ -0.29
CLK1-212ENST00000482590 MTRQ99707 1265 aa13.2□□□□□ -0.3
CLK1-212ENST00000482590 RNF40O75150 1001 aa13.19□□□□□ -0.3
CLK1-212ENST00000482590 HDGFP51858 240 aaKnown RBP13.19□□□□□ -0.3
CLK1-212ENST00000482590 NACADO15069 1562 aa13.19□□□□□ -0.3
CLK1-212ENST00000482590 APLP1P51693 650 aa13.17□□□□□ -0.3
CLK1-212ENST00000482590 SWT1Q5T5J6 900 aaKnown RBP13.16□□□□□ -0.3
CLK1-212ENST00000482590 IL21Q9HBE4 155 aa13.16□□□□□ -0.3
CLK1-212ENST00000482590 EYA1Q99502 592 aa13.15□□□□□ -0.3
CLK1-212ENST00000482590 ZNF516Q92618 1163 aa13.14□□□□□ -0.31
CLK1-212ENST00000482590 UNC13AQ9UPW8 1703 aa13.13□□□□□ -0.31
CLK1-212ENST00000482590 SLF2Q8IX21 1173 aa13.11□□□□□ -0.31
CLK1-212ENST00000482590 PTGDRQ13258 359 aa13.1□□□□□ -0.31
CLK1-212ENST00000482590 PPP1R18Q6NYC8 613 aa13.09□□□□□ -0.31
CLK1-212ENST00000482590 NECTIN2Q92692 538 aa13.08□□□□□ -0.32
CLK1-212ENST00000482590 NKX2-3Q8TAU0 364 aa13.06□□□□□ -0.32
CLK1-212ENST00000482590 COPS2P61201 443 aa13.05□□□□□ -0.32
CLK1-212ENST00000482590 Q6ZNB5 142 aa13.05□□□□□ -0.32
CLK1-212ENST00000482590 PRKD2Q9BZL6 878 aa13.05□□□□□ -0.32
CLK1-212ENST00000482590 EIF4ENIF1Q9NRA8 985 aaKnown RBP13.03□□□□□ -0.32
CLK1-212ENST00000482590 ADGRG1Q9Y653 693 aa13.03□□□□□ -0.32
CLK1-212ENST00000482590 NUTM2FA1L443 756 aa13.02□□□□□ -0.33
CLK1-212ENST00000482590 SLC4A3P48751 1232 aa13.02□□□□□ -0.33
CLK1-212ENST00000482590 DNAJB2P25686 324 aa13.01□□□□□ -0.33
CLK1-212ENST00000482590 P3H3Q8IVL6 736 aa13.01□□□□□ -0.33
CLK1-212ENST00000482590 SEMA3EO15041 775 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 943 ms