RNA–Protein interactions for RNA: ENST00000480943.5

VPS50-215, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 801 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-215ENST00000480943 ZFRQ96KR1 1074 aaKnown RBP12.8□□□□□ -0.36
VPS50-215ENST00000480943 RB1CC1Q8TDY2 1594 aa12.79□□□□□ -0.36
VPS50-215ENST00000480943 TSR3Q9UJK0 312 aaKnown RBP12.75□□□□□ -0.37
VPS50-215ENST00000480943 PROX2Q3B8N5 592 aa12.73□□□□□ -0.37
VPS50-215ENST00000480943 ONECUT3O60422 494 aaPredicted RBP12.72□□□□□ -0.37
VPS50-215ENST00000480943 EVI5O60447 810 aa12.72□□□□□ -0.37
VPS50-215ENST00000480943 PDZRN3Q9UPQ7 1066 aa12.72□□□□□ -0.37
VPS50-215ENST00000480943 NACADO15069 1562 aa12.71□□□□□ -0.37
VPS50-215ENST00000480943 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.7□□□□□ -0.38
VPS50-215ENST00000480943 LRCH3Q96II8 777 aa12.68□□□□□ -0.38
VPS50-215ENST00000480943 KIAA1468Q9P260 1216 aa12.68□□□□□ -0.38
VPS50-215ENST00000480943 HPS5Q9UPZ3 1129 aa12.68□□□□□ -0.38
VPS50-215ENST00000480943 PPP1R15BQ5SWA1 713 aa12.67□□□□□ -0.38
VPS50-215ENST00000480943 FAM98CQ17RN3 349 aaKnown RBP12.65□□□□□ -0.38
VPS50-215ENST00000480943 FBXW7Q969H0 707 aa12.64□□□□□ -0.39
VPS50-215ENST00000480943 UNC13AQ9UPW8 1703 aa12.64□□□□□ -0.39
VPS50-215ENST00000480943 COL9A1P20849 921 aa12.63□□□□□ -0.39
VPS50-215ENST00000480943 DCAF8L2P0C7V8 631 aa12.61□□□□□ -0.39
VPS50-215ENST00000480943 PPP1R18Q6NYC8 613 aa12.6□□□□□ -0.39
VPS50-215ENST00000480943 SEPT9Q9UHD8 586 aaPredicted RBP12.6□□□□□ -0.39
VPS50-215ENST00000480943 AMER1Q5JTC6 1135 aaPredicted RBP12.59□□□□□ -0.39
VPS50-215ENST00000480943 CRISPLD2Q9H0B8 497 aa12.59□□□□□ -0.39
VPS50-215ENST00000480943 PPP4CP60510 307 aa12.58□□□□□ -0.4
VPS50-215ENST00000480943 MAP3K9P80192 1104 aa12.58□□□□□ -0.4
VPS50-215ENST00000480943 TYW1BQ6NUM6 668 aa12.58□□□□□ -0.4
VPS50-215ENST00000480943 HS6ST3Q8IZP7 471 aa12.58□□□□□ -0.4
VPS50-215ENST00000480943 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.58□□□□□ -0.4
VPS50-215ENST00000480943 TJAP1Q5JTD0 557 aa12.57□□□□□ -0.4
VPS50-215ENST00000480943 PCDHGA10Q9Y5H3 936 aa12.57□□□□□ -0.4
VPS50-215ENST00000480943 CHGAP10645 457 aaKnown RBP12.56□□□□□ -0.4
VPS50-215ENST00000480943 IL21Q9HBE4 155 aa12.56□□□□□ -0.4
VPS50-215ENST00000480943 ZCCHC6Q5VYS8 1495 aaKnown RBP12.54□□□□□ -0.4
VPS50-215ENST00000480943 MYO15BQ96JP2 1530 aa12.54□□□□□ -0.4
VPS50-215ENST00000480943 TRIM6-TRIM34B2RNG4 842 aa12.53□□□□□ -0.4
VPS50-215ENST00000480943 PDE4AP27815 886 aa12.53□□□□□ -0.4
VPS50-215ENST00000480943 GGCXP38435 758 aa12.53□□□□□ -0.4
VPS50-215ENST00000480943 PHF14O94880 888 aa12.52□□□□□ -0.41
VPS50-215ENST00000480943 TREML4Q6UXN2 200 aa12.52□□□□□ -0.41
VPS50-215ENST00000480943 RTN4Q9NQC3 1192 aaKnown RBP12.52□□□□□ -0.41
VPS50-215ENST00000480943 PKDCCQ504Y2 493 aa12.51□□□□□ -0.41
VPS50-215ENST00000480943 MTRQ99707 1265 aa12.49□□□□□ -0.41
VPS50-215ENST00000480943 RYDENQ9NUL5 291 aaKnown RBP12.49□□□□□ -0.41
VPS50-215ENST00000480943 DGAT1O75907 488 aa12.47□□□□□ -0.41
VPS50-215ENST00000480943 STK17AQ9UEE5 414 aa12.46□□□□□ -0.41
VPS50-215ENST00000480943 DCAF1Q9Y4B6 1507 aa12.45□□□□□ -0.42
VPS50-215ENST00000480943 C6orf132Q5T0Z8 1188 aa12.44□□□□□ -0.42
VPS50-215ENST00000480943 MYT1Q01538 1121 aa12.43□□□□□ -0.42
VPS50-215ENST00000480943 PACS2Q86VP3 889 aa12.43□□□□□ -0.42
VPS50-215ENST00000480943 EPAS1Q99814 870 aa12.43□□□□□ -0.42
VPS50-215ENST00000480943 DNAJC5Q9H3Z4 198 aa12.42□□□□□ -0.42
VPS50-215ENST00000480943 TMUB1Q9BVT8 246 aa12.41□□□□□ -0.42
VPS50-215ENST00000480943 BICRAQ9NZM4 1560 aa12.41□□□□□ -0.42
VPS50-215ENST00000480943 NKX1-1Q15270 411 aaPredicted RBP12.39□□□□□ -0.43
VPS50-215ENST00000480943 DDX27Q96GQ7 796 aaKnown RBP12.39□□□□□ -0.43
VPS50-215ENST00000480943 LCE2AQ5TA79 106 aaPredicted RBP12.38□□□□□ -0.43
VPS50-215ENST00000480943 NCKAP5LQ9HCH0 1330 aa12.37□□□□□ -0.43
VPS50-215ENST00000480943 SCRIBQ14160 1630 aa12.36□□□□□ -0.43
VPS50-215ENST00000480943 POTECB2RU33 542 aa12.35□□□□□ -0.43
VPS50-215ENST00000480943 ZNF516Q92618 1163 aa12.34□□□□□ -0.43
VPS50-215ENST00000480943 INSM1Q01101 510 aaPredicted RBP12.33□□□□□ -0.44
VPS50-215ENST00000480943 PRR20EP86478 221 aa12.32□□□□□ -0.44
VPS50-215ENST00000480943 PRR20CP86479 221 aa12.32□□□□□ -0.44
VPS50-215ENST00000480943 PRR20DP86480 221 aa12.32□□□□□ -0.44
VPS50-215ENST00000480943 PRR20BP86481 221 aa12.32□□□□□ -0.44
VPS50-215ENST00000480943 PRR20AP86496 221 aa12.32□□□□□ -0.44
VPS50-215ENST00000480943 SAMD7Q7Z3H4 446 aa12.32□□□□□ -0.44
VPS50-215ENST00000480943 NECTIN2Q92692 538 aa12.32□□□□□ -0.44
VPS50-215ENST00000480943 LARP6Q9BRS8 491 aaKnown RBP12.32□□□□□ -0.44
VPS50-215ENST00000480943 TRIM67Q6ZTA4 783 aa12.3□□□□□ -0.44
VPS50-215ENST00000480943 SLC19A1P41440 591 aa12.29□□□□□ -0.44
VPS50-215ENST00000480943 HDGFP51858 240 aaKnown RBP12.29□□□□□ -0.44
VPS50-215ENST00000480943 WFS1O76024 890 aa12.28□□□□□ -0.44
VPS50-215ENST00000480943 LOC100996750A0A140TA64 210 aa12.27□□□□□ -0.45
VPS50-215ENST00000480943 KRTAP4-6Q9BYQ5 205 aa12.27□□□□□ -0.45
VPS50-215ENST00000480943 FAM187AA6NFU0 413 aa12.26□□□□□ -0.45
VPS50-215ENST00000480943 EMILIN3Q9NT22 766 aa12.26□□□□□ -0.45
VPS50-215ENST00000480943 MFSD10Q14728 455 aa12.25□□□□□ -0.45
VPS50-215ENST00000480943 NKX2-3Q8TAU0 364 aa12.25□□□□□ -0.45
VPS50-215ENST00000480943 GTPBP6O43824 516 aaPredicted RBP12.24□□□□□ -0.45
VPS50-215ENST00000480943 ZNF598Q86UK7 904 aaKnown RBP12.24□□□□□ -0.45
VPS50-215ENST00000480943 TSKSQ9UJT2 592 aa12.24□□□□□ -0.45
VPS50-215ENST00000480943 RBM33Q96EV2 1170 aaKnown RBP12.23□□□□□ -0.45
VPS50-215ENST00000480943 SHROOM4Q9ULL8 1493 aa12.22□□□□□ -0.45
VPS50-215ENST00000480943 WIPF1O43516 503 aa12.22□□□□□ -0.45
VPS50-215ENST00000480943 SPRYD7Q5W111 196 aa12.21□□□□□ -0.45
VPS50-215ENST00000480943 BBXQ8WY36 941 aaPredicted RBP12.21□□□□□ -0.45
VPS50-215ENST00000480943 RNF40O75150 1001 aa12.2□□□□□ -0.46
VPS50-215ENST00000480943 APLP1P51693 650 aa12.2□□□□□ -0.46
VPS50-215ENST00000480943 NBPF26B4DH59 902 aa12.18□□□□□ -0.46
VPS50-215ENST00000480943 AAASQ9NRG9 546 aa12.17□□□□□ -0.46
VPS50-215ENST00000480943 COPS2P61201 443 aa12.16□□□□□ -0.46
VPS50-215ENST00000480943 ZPR1O75312 459 aa12.15□□□□□ -0.46
VPS50-215ENST00000480943 SMAPO00193 183 aa12.14□□□□□ -0.47
VPS50-215ENST00000480943 ZNF697Q5TEC3 545 aa12.14□□□□□ -0.47
VPS50-215ENST00000480943 FAM181BA6NEQ2 426 aa12.13□□□□□ -0.47
VPS50-215ENST00000480943 RNF223E7ERA6 249 aa12.13□□□□□ -0.47
VPS50-215ENST00000480943 ST8SIA5O15466 376 aa12.13□□□□□ -0.47
VPS50-215ENST00000480943 CERKQ8TCT0 537 aa12.13□□□□□ -0.47
VPS50-215ENST00000480943 CDCA7LQ96GN5 454 aa12.13□□□□□ -0.47
VPS50-215ENST00000480943 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms