RNA–Protein interactions for RNA: ENST00000479958.6

COMMD3-212, Transcript of COMM domain containing 3, humanhuman

TSL 2

Gene COMMD3, Length 1,443 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD3-212ENST00000479958 NBR1Q14596 966 aa13.45□□□□□ -0.26
COMMD3-212ENST00000479958 TK2O00142 265 aa13.44□□□□□ -0.26
COMMD3-212ENST00000479958 DMRTA1Q5VZB9 504 aa13.42□□□□□ -0.26
COMMD3-212ENST00000479958 RBM33Q96EV2 1170 aaKnown RBP13.42□□□□□ -0.26
COMMD3-212ENST00000479958 C6orf132Q5T0Z8 1188 aa13.41□□□□□ -0.26
COMMD3-212ENST00000479958 STAC3Q96MF2 364 aa13.41□□□□□ -0.26
COMMD3-212ENST00000479958 ADGRD1Q6QNK2 874 aa13.4□□□□□ -0.26
COMMD3-212ENST00000479958 MAP3K7O43318 606 aa13.39□□□□□ -0.27
COMMD3-212ENST00000479958 SLC4A5Q9BY07 1137 aa13.39□□□□□ -0.27
COMMD3-212ENST00000479958 EN1Q05925 392 aaPredicted RBP13.39□□□□□ -0.27
COMMD3-212ENST00000479958 PPP1R3GB7ZBB8 358 aa13.37□□□□□ -0.27
COMMD3-212ENST00000479958 MYT1LQ9UL68 1186 aa13.35□□□□□ -0.27
COMMD3-212ENST00000479958 VPS9D1Q9Y2B5 631 aa13.35□□□□□ -0.27
COMMD3-212ENST00000479958 OSBPP22059 807 aa13.34□□□□□ -0.27
COMMD3-212ENST00000479958 ZBED2Q9BTP6 218 aa13.34□□□□□ -0.27
COMMD3-212ENST00000479958 SMYD5Q6GMV2 418 aa13.32□□□□□ -0.28
COMMD3-212ENST00000479958 CERKQ8TCT0 537 aa13.31□□□□□ -0.28
COMMD3-212ENST00000479958 SEMA3EO15041 775 aa13.3□□□□□ -0.28
COMMD3-212ENST00000479958 COL9A1P20849 921 aa13.3□□□□□ -0.28
COMMD3-212ENST00000479958 MLLT3P42568 568 aaPredicted RBP13.3□□□□□ -0.28
COMMD3-212ENST00000479958 HRO43593 1189 aa13.3□□□□□ -0.28
COMMD3-212ENST00000479958 ONECUT3O60422 494 aaPredicted RBP13.29□□□□□ -0.28
COMMD3-212ENST00000479958 TSR1Q2NL82 804 aaKnown RBP13.29□□□□□ -0.28
COMMD3-212ENST00000479958 RNF166Q96A37 237 aaPredicted RBP13.28□□□□□ -0.28
COMMD3-212ENST00000479958 NBPF3Q9H094 633 aa13.27□□□□□ -0.29
COMMD3-212ENST00000479958 RABGEF1Q9UJ41 708 aa13.26□□□□□ -0.29
COMMD3-212ENST00000479958 PRIM1P49642 420 aaKnown RBP13.24□□□□□ -0.29
COMMD3-212ENST00000479958 MRPL50Q8N5N7 158 aaKnown RBP13.24□□□□□ -0.29
COMMD3-212ENST00000479958 TESPA1A2RU30 521 aaPredicted RBP13.23□□□□□ -0.29
COMMD3-212ENST00000479958 GOLGA8CPA6NN73 597 aa13.23□□□□□ -0.29
COMMD3-212ENST00000479958 PROX2Q3B8N5 592 aa13.23□□□□□ -0.29
COMMD3-212ENST00000479958 BHMG1C9JSJ3 638 aaPredicted RBP13.22□□□□□ -0.29
COMMD3-212ENST00000479958 PACS2Q86VP3 889 aa13.22□□□□□ -0.29
COMMD3-212ENST00000479958 TRIM6-TRIM34B2RNG4 842 aa13.22□□□□□ -0.29
COMMD3-212ENST00000479958 KIAA1468Q9P260 1216 aa13.22□□□□□ -0.29
COMMD3-212ENST00000479958 PRSS12P56730 875 aa13.21□□□□□ -0.3
COMMD3-212ENST00000479958 TULP1O00294 542 aaPredicted RBP13.2□□□□□ -0.3
COMMD3-212ENST00000479958 CDCA7LQ96GN5 454 aa13.2□□□□□ -0.3
COMMD3-212ENST00000479958 NUTM2FA1L443 756 aa13.19□□□□□ -0.3
COMMD3-212ENST00000479958 CDHR5Q9HBB8 845 aa13.17□□□□□ -0.3
COMMD3-212ENST00000479958 LAPTM4BQ86VI4 370 aa13.16□□□□□ -0.3
COMMD3-212ENST00000479958 RBM27Q9P2N5 1060 aaKnown RBP13.15□□□□□ -0.3
COMMD3-212ENST00000479958 KCTD12Q96CX2 325 aaKnown RBP13.13□□□□□ -0.31
COMMD3-212ENST00000479958 NPDC1Q9NQX5 325 aaPredicted RBP13.13□□□□□ -0.31
COMMD3-212ENST00000479958 TSKSQ9UJT2 592 aa13.13□□□□□ -0.31
COMMD3-212ENST00000479958 FCHSD2O94868 740 aa13.11□□□□□ -0.31
COMMD3-212ENST00000479958 WNT2BQ93097 391 aa13.11□□□□□ -0.31
COMMD3-212ENST00000479958 HCSTQ9UBK5 93 aa13.11□□□□□ -0.31
COMMD3-212ENST00000479958 PTGDRQ13258 359 aa13.1□□□□□ -0.31
COMMD3-212ENST00000479958 NBPF26B4DH59 902 aa13.09□□□□□ -0.31
COMMD3-212ENST00000479958 FAM98CQ17RN3 349 aaKnown RBP13.09□□□□□ -0.31
COMMD3-212ENST00000479958 RBM26Q5T8P6 1007 aaKnown RBP13.09□□□□□ -0.31
COMMD3-212ENST00000479958 SLC24A1O60721 1099 aa13.08□□□□□ -0.32
COMMD3-212ENST00000479958 ANKK1Q8NFD2 765 aa13.08□□□□□ -0.32
COMMD3-212ENST00000479958 SEPT9Q9UHD8 586 aaPredicted RBP13.08□□□□□ -0.32
COMMD3-212ENST00000479958 TATDN2Q93075 761 aa13.07□□□□□ -0.32
COMMD3-212ENST00000479958 PNMA3Q9UL41 463 aa13.07□□□□□ -0.32
COMMD3-212ENST00000479958 PADI6Q6TGC4 694 aa13.06□□□□□ -0.32
COMMD3-212ENST00000479958 ZFRQ96KR1 1074 aaKnown RBP13.06□□□□□ -0.32
COMMD3-212ENST00000479958 HDGFP51858 240 aaKnown RBP13.05□□□□□ -0.32
COMMD3-212ENST00000479958 FAM198AQ9UFP1 575 aa13.05□□□□□ -0.32
COMMD3-212ENST00000479958 TTC13Q8NBP0 860 aa13.05□□□□□ -0.32
COMMD3-212ENST00000479958 NUDT18Q6ZVK8 323 aa13.04□□□□□ -0.32
COMMD3-212ENST00000479958 HIC1Q14526 733 aa13.03□□□□□ -0.32
COMMD3-212ENST00000479958 THSD4Q6ZMP0 1018 aa13.03□□□□□ -0.32
COMMD3-212ENST00000479958 PTPN5P54829 565 aa13.02□□□□□ -0.33
COMMD3-212ENST00000479958 SMAPO00193 183 aa13.01□□□□□ -0.33
COMMD3-212ENST00000479958 GPIHBP1Q8IV16 184 aa13□□□□□ -0.33
COMMD3-212ENST00000479958 LRCH3Q96II8 777 aa12.99□□□□□ -0.33
COMMD3-212ENST00000479958 SOWAHBA6NEL2 793 aa12.98□□□□□ -0.33
COMMD3-212ENST00000479958 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.98□□□□□ -0.33
COMMD3-212ENST00000479958 GNPATO15228 680 aa12.97□□□□□ -0.33
COMMD3-212ENST00000479958 RBM46Q8TBY0 533 aaKnown RBP12.97□□□□□ -0.33
COMMD3-212ENST00000479958 SLC4A3P48751 1232 aa12.95□□□□□ -0.34
COMMD3-212ENST00000479958 OATP04181 439 aa12.94□□□□□ -0.34
COMMD3-212ENST00000479958 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.94□□□□□ -0.34
COMMD3-212ENST00000479958 EYA1Q99502 592 aa12.94□□□□□ -0.34
COMMD3-212ENST00000479958 C3orf80F5H4A9 247 aa12.93□□□□□ -0.34
COMMD3-212ENST00000479958 BCAMP50895 628 aa12.93□□□□□ -0.34
COMMD3-212ENST00000479958 NYAP1Q6ZVC0 841 aa12.92□□□□□ -0.34
COMMD3-212ENST00000479958 SAMD7Q7Z3H4 446 aa12.92□□□□□ -0.34
COMMD3-212ENST00000479958 TSR3Q9UJK0 312 aaKnown RBP12.92□□□□□ -0.34
COMMD3-212ENST00000479958 ADGRG1Q9Y653 693 aa12.92□□□□□ -0.34
COMMD3-212ENST00000479958 PPP4CP60510 307 aa12.9□□□□□ -0.34
COMMD3-212ENST00000479958 NECTIN2Q92692 538 aa12.89□□□□□ -0.35
COMMD3-212ENST00000479958 HPS5Q9UPZ3 1129 aa12.89□□□□□ -0.35
COMMD3-212ENST00000479958 DNAJB2P25686 324 aa12.88□□□□□ -0.35
COMMD3-212ENST00000479958 GPR37O15354 613 aa12.88□□□□□ -0.35
COMMD3-212ENST00000479958 LMOD2Q6P5Q4 547 aa12.88□□□□□ -0.35
COMMD3-212ENST00000479958 SLF2Q8IX21 1173 aa12.87□□□□□ -0.35
COMMD3-212ENST00000479958 FAM161AQ3B820 660 aa12.86□□□□□ -0.35
COMMD3-212ENST00000479958 WBP1LQ9NX94 342 aa12.86□□□□□ -0.35
COMMD3-212ENST00000479958 RNF40O75150 1001 aa12.85□□□□□ -0.35
COMMD3-212ENST00000479958 FECHP22830 423 aa12.85□□□□□ -0.35
COMMD3-212ENST00000479958 SWT1Q5T5J6 900 aaKnown RBP12.85□□□□□ -0.35
COMMD3-212ENST00000479958 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.84□□□□□ -0.35
COMMD3-212ENST00000479958 RCCD1A6NED2 376 aa12.84□□□□□ -0.35
COMMD3-212ENST00000479958 PXYLP1Q8TE99 480 aa12.83□□□□□ -0.36
COMMD3-212ENST00000479958 TMEM134Q9H6X4 195 aa12.81□□□□□ -0.36
COMMD3-212ENST00000479958 PLA2G2EQ9NZK7 142 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms