RNA–Protein interactions for RNA: ENST00000479177.1

USP48-208, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 686 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-208ENST00000479177 ANKRD13DQ6ZTN6 518 aa10.86□□□□□ -0.67
USP48-208ENST00000479177 RAPGEF2Q9Y4G8 1499 aa10.85□□□□□ -0.67
USP48-208ENST00000479177 FBXO22Q8NEZ5 403 aa10.84□□□□□ -0.67
USP48-208ENST00000479177 CARMIL1Q5VZK9 1371 aa10.83□□□□□ -0.68
USP48-208ENST00000479177 SNAPC4Q5SXM2 1469 aa10.82□□□□□ -0.68
USP48-208ENST00000479177 MAGI1Q96QZ7 1491 aaPredicted RBP10.81□□□□□ -0.68
USP48-208ENST00000479177 LOC105371045A0A1W2PR82 267 aa10.81□□□□□ -0.68
USP48-208ENST00000479177 ZNF316A6NFI3 1004 aaPredicted RBP10.81□□□□□ -0.68
USP48-208ENST00000479177 DNAJC5Q9H3Z4 198 aa10.81□□□□□ -0.68
USP48-208ENST00000479177 FHAD1B1AJZ9 1412 aa10.81□□□□□ -0.68
USP48-208ENST00000479177 PTGER2P43116 358 aa10.78□□□□□ -0.68
USP48-208ENST00000479177 NLRP6P59044 892 aa10.78□□□□□ -0.68
USP48-208ENST00000479177 TNIKQ9UKE5 1360 aa10.77□□□□□ -0.68
USP48-208ENST00000479177 LSM11P83369 360 aaKnown RBP eCLIP10.77□□□□□ -0.69
USP48-208ENST00000479177 SYNJ2O15056 1496 aa10.76□□□□□ -0.69
USP48-208ENST00000479177 PPP1R37O75864 691 aa10.76□□□□□ -0.69
USP48-208ENST00000479177 POTEEQ6S8J3 1075 aa10.76□□□□□ -0.69
USP48-208ENST00000479177 CTTNBP2Q8WZ74 1663 aa10.75□□□□□ -0.69
USP48-208ENST00000479177 GRIN2AQ12879 1464 aa10.74□□□□□ -0.69
USP48-208ENST00000479177 GTPBP6O43824 516 aaPredicted RBP10.73□□□□□ -0.69
USP48-208ENST00000479177 BBXQ8WY36 941 aaPredicted RBP10.73□□□□□ -0.69
USP48-208ENST00000479177 KIF3CO14782 793 aa10.72□□□□□ -0.69
USP48-208ENST00000479177 NUDT7P0C024 238 aa10.72□□□□□ -0.69
USP48-208ENST00000479177 UBTFP17480 764 aaKnown RBP10.72□□□□□ -0.69
USP48-208ENST00000479177 AXIN2Q9Y2T1 843 aa10.72□□□□□ -0.69
USP48-208ENST00000479177 CHD1O14646 1710 aa10.72□□□□□ -0.69
USP48-208ENST00000479177 C2orf72A6NCS6 295 aa10.71□□□□□ -0.69
USP48-208ENST00000479177 CEP162Q5TB80 1403 aa10.71□□□□□ -0.69
USP48-208ENST00000479177 CEP170Q5SW79 1584 aa10.69□□□□□ -0.7
USP48-208ENST00000479177 NUP160Q12769 1436 aa10.69□□□□□ -0.7
USP48-208ENST00000479177 LHX6Q9UPM6 363 aa10.69□□□□□ -0.7
USP48-208ENST00000479177 IQGAP2Q13576 1575 aa10.67□□□□□ -0.7
USP48-208ENST00000479177 CLIP1P30622 1438 aa10.67□□□□□ -0.7
USP48-208ENST00000479177 KIAA0586Q9BVV6 1533 aa10.65□□□□□ -0.7
USP48-208ENST00000479177 CHMP7Q8WUX9 453 aaPredicted RBP10.65□□□□□ -0.7
USP48-208ENST00000479177 PCDHGA4Q9Y5G9 962 aa10.65□□□□□ -0.7
USP48-208ENST00000479177 PAXIP1Q6ZW49 1069 aaPredicted RBP10.64□□□□□ -0.71
USP48-208ENST00000479177 EFCAB5A4FU69 1503 aa10.63□□□□□ -0.71
USP48-208ENST00000479177 CFAP44Q96MT7 982 aa10.63□□□□□ -0.71
USP48-208ENST00000479177 SAMD9Q5K651 1589 aa10.63□□□□□ -0.71
USP48-208ENST00000479177 UGGT2Q9NYU1 1516 aa10.63□□□□□ -0.71
USP48-208ENST00000479177 ARAP1Q96P48 1450 aa10.62□□□□□ -0.71
USP48-208ENST00000479177 ARHGAP35Q9NRY4 1499 aa10.62□□□□□ -0.71
USP48-208ENST00000479177 PBX2P40425 430 aa10.62□□□□□ -0.71
USP48-208ENST00000479177 PLA2G2EQ9NZK7 142 aa10.62□□□□□ -0.71
USP48-208ENST00000479177 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.62□□□□□ -0.71
USP48-208ENST00000479177 CLASP1Q7Z460 1538 aa10.62□□□□□ -0.71
USP48-208ENST00000479177 SLC34A2O95436 690 aa10.59□□□□□ -0.71
USP48-208ENST00000479177 SPRYD3Q8NCJ5 442 aa10.59□□□□□ -0.71
USP48-208ENST00000479177 SHROOM2Q13796 1616 aa10.58□□□□□ -0.72
USP48-208ENST00000479177 RYDENQ9NUL5 291 aaKnown RBP10.58□□□□□ -0.72
USP48-208ENST00000479177 KIAA0556O60303 1618 aa10.58□□□□□ -0.72
USP48-208ENST00000479177 RANGAP1P46060 587 aaPredicted RBP10.57□□□□□ -0.72
USP48-208ENST00000479177 DISP1Q96F81 1524 aa10.57□□□□□ -0.72
USP48-208ENST00000479177 ADGRD1Q6QNK2 874 aa10.56□□□□□ -0.72
USP48-208ENST00000479177 HCSTQ9UBK5 93 aa10.56□□□□□ -0.72
USP48-208ENST00000479177 FHOD3Q2V2M9 1422 aa10.56□□□□□ -0.72
USP48-208ENST00000479177 VPS8Q8N3P4 1428 aa10.56□□□□□ -0.72
USP48-208ENST00000479177 KDM4FA0A1W2PPD8 638 aa10.54□□□□□ -0.72
USP48-208ENST00000479177 CADPS2Q86UW7 1296 aa10.54□□□□□ -0.72
USP48-208ENST00000479177 ARHGAP33O14559 1287 aa10.53□□□□□ -0.72
USP48-208ENST00000479177 DMRTA1Q5VZB9 504 aa10.53□□□□□ -0.72
USP48-208ENST00000479177 PCF11O94913 1555 aaKnown RBP10.52□□□□□ -0.72
USP48-208ENST00000479177 TMC2Q8TDI7 906 aa10.52□□□□□ -0.73
USP48-208ENST00000479177 PSEN2P49810 448 aa10.51□□□□□ -0.73
USP48-208ENST00000479177 CARMIL2Q6F5E8 1435 aa10.5□□□□□ -0.73
USP48-208ENST00000479177 HRO43593 1189 aa10.5□□□□□ -0.73
USP48-208ENST00000479177 JPH4Q96JJ6 628 aa10.5□□□□□ -0.73
USP48-208ENST00000479177 FMN1Q68DA7 1419 aa10.5□□□□□ -0.73
USP48-208ENST00000479177 PRG4Q92954 1404 aaPredicted RBP10.5□□□□□ -0.73
USP48-208ENST00000479177 ERCC6L2Q5T890 1561 aa10.49□□□□□ -0.73
USP48-208ENST00000479177 FYCO1Q9BQS8 1478 aa10.49□□□□□ -0.73
USP48-208ENST00000479177 P3H3Q8IVL6 736 aa10.48□□□□□ -0.73
USP48-208ENST00000479177 PLCB2Q00722 1185 aa10.47□□□□□ -0.73
USP48-208ENST00000479177 NCKAP5LQ9HCH0 1330 aa10.47□□□□□ -0.73
USP48-208ENST00000479177 CASKIN1Q8WXD9 1431 aa10.47□□□□□ -0.73
USP48-208ENST00000479177 TSHZ2Q9NRE2 1034 aa10.46□□□□□ -0.73
USP48-208ENST00000479177 CFAP43Q8NDM7 1665 aa10.45□□□□□ -0.74
USP48-208ENST00000479177 PTCD2Q8WV60 388 aaKnown RBP10.45□□□□□ -0.74
USP48-208ENST00000479177 HECW1Q76N89 1606 aa10.44□□□□□ -0.74
USP48-208ENST00000479177 RAPGEF6Q8TEU7 1601 aa10.44□□□□□ -0.74
USP48-208ENST00000479177 TK2O00142 265 aa10.44□□□□□ -0.74
USP48-208ENST00000479177 KCTD12Q96CX2 325 aaKnown RBP10.44□□□□□ -0.74
USP48-208ENST00000479177 LRRIQ1Q96JM4 1722 aa10.44□□□□□ -0.74
USP48-208ENST00000479177 ABCA8O94911 1581 aa10.43□□□□□ -0.74
USP48-208ENST00000479177 CRISPLD2Q9H0B8 497 aa10.43□□□□□ -0.74
USP48-208ENST00000479177 TIAM1Q13009 1591 aa10.43□□□□□ -0.74
USP48-208ENST00000479177 MAP3K1Q13233 1512 aa10.43□□□□□ -0.74
USP48-208ENST00000479177 PSDA5PKW4 1024 aaPredicted RBP10.42□□□□□ -0.74
USP48-208ENST00000479177 DSG2Q14126 1118 aa10.41□□□□□ -0.74
USP48-208ENST00000479177 GPHNQ9NQX3 736 aaPredicted RBP10.41□□□□□ -0.74
USP48-208ENST00000479177 NUP153P49790 1475 aaKnown RBP10.41□□□□□ -0.74
USP48-208ENST00000479177 PLB1Q6P1J6 1458 aa10.41□□□□□ -0.74
USP48-208ENST00000479177 PTPRGP23470 1445 aa10.41□□□□□ -0.74
USP48-208ENST00000479177 CCDC18Q5T9S5 1454 aa10.4□□□□□ -0.74
USP48-208ENST00000479177 PLPP6Q8IY26 295 aa10.39□□□□□ -0.75
USP48-208ENST00000479177 LARP6Q9BRS8 491 aaKnown RBP10.39□□□□□ -0.75
USP48-208ENST00000479177 ARHGEF11O15085 1522 aa10.38□□□□□ -0.75
USP48-208ENST00000479177 EPRSP07814 1512 aaKnown RBP10.38□□□□□ -0.75
USP48-208ENST00000479177 ABCC2Q92887 1545 aa10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 102.3 ms