RNA–Protein interactions for RNA: ENST00000479107.1

HLA-DPA1-247, Transcript of major histocompatibility complex, class II, DP alpha 1, humanhuman

Gene HLA-DPA1, Length 5,025 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DPA1-247ENST00000479107 TARBP1Q13395 1621 aaKnown RBP11.13□□□□□ -0.63
HLA-DPA1-247ENST00000479107 SETD5Q9C0A6 1442 aa11.13□□□□□ -0.63
HLA-DPA1-247ENST00000479107 SENP3-EIF4A1A0A087X0R7 540 aa11.13□□□□□ -0.63
HLA-DPA1-247ENST00000479107 NCLP19338 710 aaKnown RBP11.11□□□□□ -0.63
HLA-DPA1-247ENST00000479107 PNNQ9H307 717 aaKnown RBP11.11□□□□□ -0.63
HLA-DPA1-247ENST00000479107 POGKQ9P215 609 aa11.11□□□□□ -0.63
HLA-DPA1-247ENST00000479107 PTMAP06454 111 aaKnown RBP11.11□□□□□ -0.63
HLA-DPA1-247ENST00000479107 RSPH6AQ9H0K4 717 aa11.1□□□□□ -0.63
HLA-DPA1-247ENST00000479107 DNTTIP2Q5QJE6 756 aaKnown RBP11.1□□□□□ -0.63
HLA-DPA1-247ENST00000479107 MYH16Q9H6N6 1097 aa11.09□□□□□ -0.63
HLA-DPA1-247ENST00000479107 NCKAP5LQ9HCH0 1330 aa11.09□□□□□ -0.63
HLA-DPA1-247ENST00000479107 TSPOAP1O95153 1857 aa11.08□□□□□ -0.64
HLA-DPA1-247ENST00000479107 CNTLNQ9NXG0 1405 aa11.08□□□□□ -0.64
HLA-DPA1-247ENST00000479107 PLEKHH2Q8IVE3 1493 aa11.08□□□□□ -0.64
HLA-DPA1-247ENST00000479107 HSPA5P11021 654 aaKnown RBP11.07□□□□□ -0.64
HLA-DPA1-247ENST00000479107 CARD11Q9BXL7 1154 aa11.07□□□□□ -0.64
HLA-DPA1-247ENST00000479107 CLASP1Q7Z460 1538 aa11.07□□□□□ -0.64
HLA-DPA1-247ENST00000479107 NGLY1Q96IV0 654 aa11.06□□□□□ -0.64
HLA-DPA1-247ENST00000479107 NUDCQ9Y266 331 aa11.06□□□□□ -0.64
HLA-DPA1-247ENST00000479107 RAB3GAP2Q9H2M9 1393 aa11.06□□□□□ -0.64
HLA-DPA1-247ENST00000479107 PBRM1Q86U86 1689 aa11.06□□□□□ -0.64
HLA-DPA1-247ENST00000479107 EPRSP07814 1512 aaKnown RBP11.06□□□□□ -0.64
HLA-DPA1-247ENST00000479107 MSNP26038 577 aaKnown RBP11.06□□□□□ -0.64
HLA-DPA1-247ENST00000479107 DHX57Q6P158 1386 aaKnown RBP11.05□□□□□ -0.64
HLA-DPA1-247ENST00000479107 SLC24A1O60721 1099 aa11.04□□□□□ -0.64
HLA-DPA1-247ENST00000479107 RCAN3Q9UKA8 241 aa11.04□□□□□ -0.64
HLA-DPA1-247ENST00000479107 KNSTRNQ9Y448 316 aa11.04□□□□□ -0.64
HLA-DPA1-247ENST00000479107 NEO1Q92859 1461 aa11.03□□□□□ -0.64
HLA-DPA1-247ENST00000479107 GSE1Q14687 1217 aa11.03□□□□□ -0.64
HLA-DPA1-247ENST00000479107 PPP1R1BQ9UD71 204 aaPredicted RBP11.03□□□□□ -0.64
HLA-DPA1-247ENST00000479107 ANKRD30AQ9BXX3 1397 aa11.03□□□□□ -0.64
HLA-DPA1-247ENST00000479107 CDCA8Q53HL2 280 aa11.03□□□□□ -0.64
HLA-DPA1-247ENST00000479107 HSCBQ8IWL3 235 aa11.02□□□□□ -0.64
HLA-DPA1-247ENST00000479107 HSP90AB1P08238 724 aaKnown RBP11.02□□□□□ -0.64
HLA-DPA1-247ENST00000479107 MSH6P52701 1360 aa11.02□□□□□ -0.65
HLA-DPA1-247ENST00000479107 CDK11BP21127 795 aaKnown RBP11.01□□□□□ -0.65
HLA-DPA1-247ENST00000479107 UHRF1BP1LA0JNW5 1464 aa11.01□□□□□ -0.65
HLA-DPA1-247ENST00000479107 KANK4Q5T7N3 995 aaPredicted RBP11.01□□□□□ -0.65
HLA-DPA1-247ENST00000479107 FTSJ3Q8IY81 847 aaKnown RBP11.01□□□□□ -0.65
HLA-DPA1-247ENST00000479107 PAK3O75914 559 aaPredicted RBP11.01□□□□□ -0.65
HLA-DPA1-247ENST00000479107 TNRQ92752 1358 aa11.01□□□□□ -0.65
HLA-DPA1-247ENST00000479107 C9orf84Q5VXU9 1444 aa11.01□□□□□ -0.65
HLA-DPA1-247ENST00000479107 GOLGA6L3A6NEY3 463 aa11□□□□□ -0.65
HLA-DPA1-247ENST00000479107 HSP90AA2PQ14568 343 aaPredicted RBP11□□□□□ -0.65
HLA-DPA1-247ENST00000479107 ATP10AO60312 1499 aa11□□□□□ -0.65
HLA-DPA1-247ENST00000479107 PTMSP20962 102 aa11□□□□□ -0.65
HLA-DPA1-247ENST00000479107 FAM135AQ9P2D6 1515 aa11□□□□□ -0.65
HLA-DPA1-247ENST00000479107 EVA1CP58658 441 aa11□□□□□ -0.65
HLA-DPA1-247ENST00000479107 TROQ12816 1431 aaPredicted RBP10.99□□□□□ -0.65
HLA-DPA1-247ENST00000479107 MS4A1P11836 297 aa10.99□□□□□ -0.65
HLA-DPA1-247ENST00000479107 MAPKBP1O60336 1514 aa10.99□□□□□ -0.65
HLA-DPA1-247ENST00000479107 CADPS2Q86UW7 1296 aa10.99□□□□□ -0.65
HLA-DPA1-247ENST00000479107 ZNF772Q68DY9 489 aaPredicted RBP10.98□□□□□ -0.65
HLA-DPA1-247ENST00000479107 CASC1Q6TDU7 716 aa10.98□□□□□ -0.65
HLA-DPA1-247ENST00000479107 YEATS2Q9ULM3 1422 aa10.98□□□□□ -0.65
HLA-DPA1-247ENST00000479107 RGL3Q3MIN7 710 aa10.98□□□□□ -0.65
HLA-DPA1-247ENST00000479107 FRAT1Q92837 279 aaPredicted RBP10.97□□□□□ -0.65
HLA-DPA1-247ENST00000479107 CFAP53Q96M91 514 aa10.97□□□□□ -0.65
HLA-DPA1-247ENST00000479107 SLC26A8Q96RN1 970 aa10.97□□□□□ -0.65
HLA-DPA1-247ENST00000479107 ABCA5Q8WWZ7 1642 aa10.97□□□□□ -0.65
HLA-DPA1-247ENST00000479107 PDE4AP27815 886 aa10.97□□□□□ -0.65
HLA-DPA1-247ENST00000479107 ZNF518AQ6AHZ1 1483 aa10.97□□□□□ -0.65
HLA-DPA1-247ENST00000479107 SLKQ9H2G2 1235 aaPredicted RBP10.97□□□□□ -0.65
HLA-DPA1-247ENST00000479107 STK26Q9P289 416 aa10.97□□□□□ -0.65
HLA-DPA1-247ENST00000479107 CSB-PGBD3P0DP91 1061 aa10.96□□□□□ -0.65
HLA-DPA1-247ENST00000479107 GBP4Q96PP9 640 aa10.96□□□□□ -0.65
HLA-DPA1-247ENST00000479107 ZBED9Q6R2W3 1325 aa10.96□□□□□ -0.65
HLA-DPA1-247ENST00000479107 EFCAB5A4FU69 1503 aa10.96□□□□□ -0.65
HLA-DPA1-247ENST00000479107 PDE3BQ13370 1112 aa10.96□□□□□ -0.66
HLA-DPA1-247ENST00000479107 VSIG10Q8N0Z9 540 aa10.96□□□□□ -0.66
HLA-DPA1-247ENST00000479107 CHAF1AQ13111 956 aaPredicted RBP10.95□□□□□ -0.66
HLA-DPA1-247ENST00000479107 RALBP1Q15311 655 aa10.95□□□□□ -0.66
HLA-DPA1-247ENST00000479107 ADAMTS2O95450 1211 aa10.95□□□□□ -0.66
HLA-DPA1-247ENST00000479107 KLHL34Q8N239 644 aa10.95□□□□□ -0.66
HLA-DPA1-247ENST00000479107 GZF1Q9H116 711 aaPredicted RBP10.95□□□□□ -0.66
HLA-DPA1-247ENST00000479107 CHMP4BQ9H444 224 aaKnown RBP10.95□□□□□ -0.66
HLA-DPA1-247ENST00000479107 ZRANB1Q9UGI0 708 aa10.95□□□□□ -0.66
HLA-DPA1-247ENST00000479107 PSME1Q06323 249 aa10.94□□□□□ -0.66
HLA-DPA1-247ENST00000479107 CC2D1BQ5T0F9 858 aaKnown RBP10.94□□□□□ -0.66
HLA-DPA1-247ENST00000479107 SLC52A1Q9NWF4 448 aa10.94□□□□□ -0.66
HLA-DPA1-247ENST00000479107 ATP10BO94823 1461 aa10.94□□□□□ -0.66
HLA-DPA1-247ENST00000479107 ARHGAP35Q9NRY4 1499 aa10.94□□□□□ -0.66
HLA-DPA1-247ENST00000479107 ZFYVE16Q7Z3T8 1539 aa10.94□□□□□ -0.66
HLA-DPA1-247ENST00000479107 ERCC6L2Q5T890 1561 aa10.94□□□□□ -0.66
HLA-DPA1-247ENST00000479107 PRKCSHP14314 528 aaPredicted RBP10.94□□□□□ -0.66
HLA-DPA1-247ENST00000479107 PLCH2O75038 1416 aa10.93□□□□□ -0.66
HLA-DPA1-247ENST00000479107 ZMYM3Q14202 1370 aa10.93□□□□□ -0.66
HLA-DPA1-247ENST00000479107 SOCS7O14512 581 aa10.93□□□□□ -0.66
HLA-DPA1-247ENST00000479107 NGDNQ8NEJ9 315 aaKnown RBP10.93□□□□□ -0.66
HLA-DPA1-247ENST00000479107 TRAPPC8Q9Y2L5 1435 aa10.93□□□□□ -0.66
HLA-DPA1-247ENST00000479107 VGFO15240 615 aaPredicted RBP10.93□□□□□ -0.66
HLA-DPA1-247ENST00000479107 SPRYD3Q8NCJ5 442 aa10.93□□□□□ -0.66
HLA-DPA1-247ENST00000479107 KTN1Q86UP2 1357 aaKnown RBP10.93□□□□□ -0.66
HLA-DPA1-247ENST00000479107 MAGI3Q5TCQ9 1506 aa10.92□□□□□ -0.66
HLA-DPA1-247ENST00000479107 UGGT2Q9NYU1 1516 aa10.92□□□□□ -0.66
HLA-DPA1-247ENST00000479107 KDM5BQ9UGL1 1544 aa10.91□□□□□ -0.66
HLA-DPA1-247ENST00000479107 PTPRMP28827 1452 aa10.91□□□□□ -0.66
HLA-DPA1-247ENST00000479107 BIVM-ERCC5R4GMW8 1640 aa10.91□□□□□ -0.66
HLA-DPA1-247ENST00000479107 RXRBP28702 533 aa10.91□□□□□ -0.66
HLA-DPA1-247ENST00000479107 NEUROD2Q15784 382 aa10.91□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms