RNA–Protein interactions for RNA: ENST00000473171.5

LSAMP-202, Transcript of limbic system associated membrane protein, humanhuman

TSL 3

Gene LSAMP, Length 640 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSAMP-202ENST00000473171 C9orf84Q5VXU9 1444 aa13.06□□□□□ -0.32
LSAMP-202ENST00000473171 ATP10AO60312 1499 aa13.06□□□□□ -0.32
LSAMP-202ENST00000473171 GALR2O43603 387 aaPredicted RBP13.06□□□□□ -0.32
LSAMP-202ENST00000473171 UHRF1BP1Q6BDS2 1440 aa13.05□□□□□ -0.32
LSAMP-202ENST00000473171 DCBLD2Q96PD2 775 aa13.05□□□□□ -0.32
LSAMP-202ENST00000473171 PLCH2O75038 1416 aa13.05□□□□□ -0.32
LSAMP-202ENST00000473171 SPATA31D1Q6ZQQ2 1576 aa13.04□□□□□ -0.32
LSAMP-202ENST00000473171 GSE1Q14687 1217 aa13.03□□□□□ -0.32
LSAMP-202ENST00000473171 ATP1B4Q9UN42 357 aaPredicted RBP13.03□□□□□ -0.32
LSAMP-202ENST00000473171 PREX1Q8TCU6 1659 aa13.02□□□□□ -0.32
LSAMP-202ENST00000473171 KIF12Q96FN5 646 aa13.02□□□□□ -0.33
LSAMP-202ENST00000473171 PLSCR2Q9NRY7 297 aa13.02□□□□□ -0.33
LSAMP-202ENST00000473171 MYT1LQ9UL68 1186 aa13.02□□□□□ -0.33
LSAMP-202ENST00000473171 EFCAB2Q5VUJ9 269 aa13.01□□□□□ -0.33
LSAMP-202ENST00000473171 MS4A3Q96HJ5 214 aa13.01□□□□□ -0.33
LSAMP-202ENST00000473171 AFAP1Q8N556 730 aa13□□□□□ -0.33
LSAMP-202ENST00000473171 MAP3K13O43283 966 aa12.99□□□□□ -0.33
LSAMP-202ENST00000473171 CIZ1Q9ULV3 898 aaPredicted RBP12.99□□□□□ -0.33
LSAMP-202ENST00000473171 STRCQ7RTU9 1775 aa12.99□□□□□ -0.33
LSAMP-202ENST00000473171 ZNF518AQ6AHZ1 1483 aa12.97□□□□□ -0.33
LSAMP-202ENST00000473171 PTPRTO14522 1441 aa12.97□□□□□ -0.33
LSAMP-202ENST00000473171 PYGBP11216 843 aa12.96□□□□□ -0.33
LSAMP-202ENST00000473171 ARHGAP5Q13017 1502 aa12.95□□□□□ -0.34
LSAMP-202ENST00000473171 ESF1Q9H501 851 aaKnown RBP12.95□□□□□ -0.34
LSAMP-202ENST00000473171 PCDHB13Q9Y5F0 798 aa12.95□□□□□ -0.34
LSAMP-202ENST00000473171 LTBP4Q8N2S1 1624 aa12.95□□□□□ -0.34
LSAMP-202ENST00000473171 DIP2CQ9Y2E4 1556 aa12.94□□□□□ -0.34
LSAMP-202ENST00000473171 KIF14Q15058 1648 aa12.93□□□□□ -0.34
LSAMP-202ENST00000473171 KDM5CP41229 1560 aa12.93□□□□□ -0.34
LSAMP-202ENST00000473171 EEA1Q15075 1411 aa12.92□□□□□ -0.34
LSAMP-202ENST00000473171 NCOA1Q15788 1441 aa12.92□□□□□ -0.34
LSAMP-202ENST00000473171 TRAPPC8Q9Y2L5 1435 aa12.92□□□□□ -0.34
LSAMP-202ENST00000473171 SGIP1Q9BQI5 828 aa12.91□□□□□ -0.34
LSAMP-202ENST00000473171 CDK11AQ9UQ88 783 aaPredicted RBP12.91□□□□□ -0.34
LSAMP-202ENST00000473171 ZNF335Q9H4Z2 1342 aaPredicted RBP12.9□□□□□ -0.34
LSAMP-202ENST00000473171 TROQ12816 1431 aaPredicted RBP12.9□□□□□ -0.34
LSAMP-202ENST00000473171 ABCA6Q8N139 1617 aa12.9□□□□□ -0.34
LSAMP-202ENST00000473171 MYO5CQ9NQX4 1742 aa12.9□□□□□ -0.34
LSAMP-202ENST00000473171 NCKAP5LQ9HCH0 1330 aa12.89□□□□□ -0.35
LSAMP-202ENST00000473171 UBAP1LF5GYI3 381 aa12.89□□□□□ -0.35
LSAMP-202ENST00000473171 POTEIP0CG38 1075 aa12.89□□□□□ -0.35
LSAMP-202ENST00000473171 C3P01024 1663 aa12.89□□□□□ -0.35
LSAMP-202ENST00000473171 CLIP1P30622 1438 aa12.88□□□□□ -0.35
LSAMP-202ENST00000473171 FMN1Q68DA7 1419 aa12.88□□□□□ -0.35
LSAMP-202ENST00000473171 IQSEC2Q5JU85 1478 aa12.88□□□□□ -0.35
LSAMP-202ENST00000473171 REREQ9P2R6 1566 aa12.87□□□□□ -0.35
LSAMP-202ENST00000473171 MLH3Q9UHC1 1453 aa12.87□□□□□ -0.35
LSAMP-202ENST00000473171 UBTFP17480 764 aaKnown RBP12.87□□□□□ -0.35
LSAMP-202ENST00000473171 CAMSAP1Q5T5Y3 1602 aa12.86□□□□□ -0.35
LSAMP-202ENST00000473171 AGLP35573 1532 aa12.86□□□□□ -0.35
LSAMP-202ENST00000473171 ARHGAP35Q9NRY4 1499 aa12.85□□□□□ -0.35
LSAMP-202ENST00000473171 IFNL1Q8IU54 200 aa12.85□□□□□ -0.35
LSAMP-202ENST00000473171 CNTLNQ9NXG0 1405 aa12.85□□□□□ -0.35
LSAMP-202ENST00000473171 ABCC1P33527 1531 aa12.83□□□□□ -0.35
LSAMP-202ENST00000473171 ZMYM3Q14202 1370 aa12.82□□□□□ -0.36
LSAMP-202ENST00000473171 NPATQ14207 1427 aa12.82□□□□□ -0.36
LSAMP-202ENST00000473171 LHX8Q68G74 356 aa12.82□□□□□ -0.36
LSAMP-202ENST00000473171 CHRM1P11229 460 aaPredicted RBP12.81□□□□□ -0.36
LSAMP-202ENST00000473171 ZNF777Q9ULD5 760 aaPredicted RBP12.81□□□□□ -0.36
LSAMP-202ENST00000473171 TRPC6Q9Y210 931 aa12.81□□□□□ -0.36
LSAMP-202ENST00000473171 ATMINO43313 823 aaPredicted RBP12.8□□□□□ -0.36
LSAMP-202ENST00000473171 TIE1P35590 1138 aa12.8□□□□□ -0.36
LSAMP-202ENST00000473171 PIP4K2BP78356 416 aa12.8□□□□□ -0.36
LSAMP-202ENST00000473171 SETD1BQ9UPS6 1966 aaKnown RBP12.8□□□□□ -0.36
LSAMP-202ENST00000473171 HSPA1LP34931 641 aa12.79□□□□□ -0.36
LSAMP-202ENST00000473171 ASTLQ6HA08 431 aaPredicted RBP12.79□□□□□ -0.36
LSAMP-202ENST00000473171 ZNF467Q7Z7K2 595 aaPredicted RBP12.79□□□□□ -0.36
LSAMP-202ENST00000473171 PCDHB8Q9UN66 801 aa12.79□□□□□ -0.36
LSAMP-202ENST00000473171 PREX2Q70Z35 1606 aa12.78□□□□□ -0.36
LSAMP-202ENST00000473171 PKD2Q13563 968 aa12.78□□□□□ -0.36
LSAMP-202ENST00000473171 BMP2KQ9NSY1 1161 aaPredicted RBP12.78□□□□□ -0.36
LSAMP-202ENST00000473171 CDC42BPBQ9Y5S2 1711 aa12.78□□□□□ -0.36
LSAMP-202ENST00000473171 KIDINS220Q9ULH0 1771 aa12.78□□□□□ -0.36
LSAMP-202ENST00000473171 ITSN2Q9NZM3 1697 aa12.77□□□□□ -0.36
LSAMP-202ENST00000473171 HNRNPMP52272 730 aaKnown RBP eCLIP12.77□□□□□ -0.37
LSAMP-202ENST00000473171 SPAG9O60271 1321 aaKnown RBP12.77□□□□□ -0.37
LSAMP-202ENST00000473171 SAMD9LQ8IVG5 1584 aa12.77□□□□□ -0.37
LSAMP-202ENST00000473171 GGT6Q6P531 493 aa12.76□□□□□ -0.37
LSAMP-202ENST00000473171 PLA2R1Q13018 1463 aa12.76□□□□□ -0.37
LSAMP-202ENST00000473171 TCOF1Q13428 1488 aaKnown RBP12.76□□□□□ -0.37
LSAMP-202ENST00000473171 ATN1P54259 1190 aaPredicted RBP12.75□□□□□ -0.37
LSAMP-202ENST00000473171 PTPRKQ15262 1439 aa12.75□□□□□ -0.37
LSAMP-202ENST00000473171 MED1Q15648 1581 aaPredicted RBP12.75□□□□□ -0.37
LSAMP-202ENST00000473171 SYCP2Q9BX26 1530 aa12.75□□□□□ -0.37
LSAMP-202ENST00000473171 MYO3AQ8NEV4 1616 aa12.74□□□□□ -0.37
LSAMP-202ENST00000473171 CEP170BQ9Y4F5 1589 aaPredicted RBP12.74□□□□□ -0.37
LSAMP-202ENST00000473171 TTLL13PA6NNM8 815 aa12.74□□□□□ -0.37
LSAMP-202ENST00000473171 TMEM106CQ9BVX2 250 aa12.74□□□□□ -0.37
LSAMP-202ENST00000473171 LRRIQ1Q96JM4 1722 aa12.74□□□□□ -0.37
LSAMP-202ENST00000473171 PELP1Q8IZL8 1130 aaKnown RBP12.73□□□□□ -0.37
LSAMP-202ENST00000473171 MROH2AA6NES4 1674 aa12.73□□□□□ -0.37
LSAMP-202ENST00000473171 CCDC18Q5T9S5 1454 aa12.72□□□□□ -0.37
LSAMP-202ENST00000473171 A2MP01023 1474 aa12.72□□□□□ -0.37
LSAMP-202ENST00000473171 CASKIN1Q8WXD9 1431 aa12.71□□□□□ -0.37
LSAMP-202ENST00000473171 CLTCQ00610 1675 aaKnown RBP12.71□□□□□ -0.37
LSAMP-202ENST00000473171 SLC39A7Q92504 469 aa12.71□□□□□ -0.37
LSAMP-202ENST00000473171 ATP7AQ04656 1500 aa12.71□□□□□ -0.38
LSAMP-202ENST00000473171 SUPT6HQ7KZ85 1726 aaKnown RBP12.71□□□□□ -0.38
LSAMP-202ENST00000473171 ZNF142P52746 1687 aaPredicted RBP12.7□□□□□ -0.38
LSAMP-202ENST00000473171 TOM1O60784 492 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms