RNA–Protein interactions for RNA: ENST00000471702.2

NPHP3-ACAD11-201, Transcript of NPHP3-ACAD11 readthrough (NMD candidate), humanhuman

TSL 2 BASIC

Gene NPHP3-ACAD11, Length 7,784 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-ACAD11-201ENST00000471702 RILPL2Q969X0 211 aa16.44■□□□□ 0.22
NPHP3-ACAD11-201ENST00000471702 CALD1Q05682 793 aaKnown RBP16.44■□□□□ 0.22
NPHP3-ACAD11-201ENST00000471702 H3BQV1 296 aa16.43■□□□□ 0.22
NPHP3-ACAD11-201ENST00000471702 IFFO2Q5TF58 517 aa16.43■□□□□ 0.22
NPHP3-ACAD11-201ENST00000471702 EID1Q9Y6B2 187 aa16.43■□□□□ 0.22
NPHP3-ACAD11-201ENST00000471702 DHX16O60231 1041 aaKnown RBP16.43■□□□□ 0.22
NPHP3-ACAD11-201ENST00000471702 AKAP17AQ02040 695 aaKnown RBP16.43■□□□□ 0.22
NPHP3-ACAD11-201ENST00000471702 TSR1Q2NL82 804 aaKnown RBP16.42■□□□□ 0.22
NPHP3-ACAD11-201ENST00000471702 KIF16BQ96L93 1317 aa16.42■□□□□ 0.22
NPHP3-ACAD11-201ENST00000471702 ELL2O00472 640 aaPredicted RBP16.42■□□□□ 0.22
NPHP3-ACAD11-201ENST00000471702 MCTP1Q6DN14 999 aa16.41■□□□□ 0.22
NPHP3-ACAD11-201ENST00000471702 RWDD1Q9H446 243 aaPredicted RBP16.41■□□□□ 0.22
NPHP3-ACAD11-201ENST00000471702 NECTIN2Q92692 538 aa16.4■□□□□ 0.22
NPHP3-ACAD11-201ENST00000471702 VPS37DQ86XT2 251 aa16.4■□□□□ 0.22
NPHP3-ACAD11-201ENST00000471702 PCMTD1Q96MG8 357 aaPredicted RBP16.4■□□□□ 0.22
NPHP3-ACAD11-201ENST00000471702 PPM1FP49593 454 aaPredicted RBP16.4■□□□□ 0.22
NPHP3-ACAD11-201ENST00000471702 APPP05067 770 aa16.4■□□□□ 0.22
NPHP3-ACAD11-201ENST00000471702 ROCK2O75116 1388 aaKnown RBP16.38■□□□□ 0.21
NPHP3-ACAD11-201ENST00000471702 FAM184AQ8NB25 1140 aa16.38■□□□□ 0.21
NPHP3-ACAD11-201ENST00000471702 WDR70Q9NW82 654 aa16.38■□□□□ 0.21
NPHP3-ACAD11-201ENST00000471702 HMMRO75330 724 aa16.38■□□□□ 0.21
NPHP3-ACAD11-201ENST00000471702 DCAF1Q9Y4B6 1507 aa16.38■□□□□ 0.21
NPHP3-ACAD11-201ENST00000471702 NOL10Q9BSC4 688 aaKnown RBP16.37■□□□□ 0.21
NPHP3-ACAD11-201ENST00000471702 RCAN3Q9UKA8 241 aa16.37■□□□□ 0.21
NPHP3-ACAD11-201ENST00000471702 KTN1Q86UP2 1357 aaKnown RBP16.37■□□□□ 0.21
NPHP3-ACAD11-201ENST00000471702 PKD2Q13563 968 aa16.37■□□□□ 0.21
NPHP3-ACAD11-201ENST00000471702 PPP1R1BQ9UD71 204 aaPredicted RBP16.37■□□□□ 0.21
NPHP3-ACAD11-201ENST00000471702 RRP7AQ9Y3A4 280 aaKnown RBP16.36■□□□□ 0.21
NPHP3-ACAD11-201ENST00000471702 CEP162Q5TB80 1403 aa16.36■□□□□ 0.21
NPHP3-ACAD11-201ENST00000471702 EIF2S2P20042 333 aaKnown RBP16.34■□□□□ 0.21
NPHP3-ACAD11-201ENST00000471702 CCDC43Q96MW1 224 aaKnown RBP16.34■□□□□ 0.21
NPHP3-ACAD11-201ENST00000471702 C1orf141Q5JVX7 400 aa16.34■□□□□ 0.21
NPHP3-ACAD11-201ENST00000471702 CSPP1Q1MSJ5 1256 aa16.33■□□□□ 0.21
NPHP3-ACAD11-201ENST00000471702 MTMR7Q9Y216 660 aa16.33■□□□□ 0.21
NPHP3-ACAD11-201ENST00000471702 BCL2L13Q9BXK5 485 aa16.33■□□□□ 0.21
NPHP3-ACAD11-201ENST00000471702 BCL11BQ9C0K0 894 aaPredicted RBP16.33■□□□□ 0.2
NPHP3-ACAD11-201ENST00000471702 AMOTL1Q8IY63 956 aa16.33■□□□□ 0.2
NPHP3-ACAD11-201ENST00000471702 GOLGA3Q08378 1498 aa16.33■□□□□ 0.2
NPHP3-ACAD11-201ENST00000471702 KIF3BO15066 747 aa16.32■□□□□ 0.2
NPHP3-ACAD11-201ENST00000471702 CCDC97Q96F63 343 aaPredicted RBP16.32■□□□□ 0.2
NPHP3-ACAD11-201ENST00000471702 GOLGA6L19H0YKK7 550 aa16.32■□□□□ 0.2
NPHP3-ACAD11-201ENST00000471702 FOSBP53539 338 aa16.32■□□□□ 0.2
NPHP3-ACAD11-201ENST00000471702 SYNE3Q6ZMZ3 975 aa16.31■□□□□ 0.2
NPHP3-ACAD11-201ENST00000471702 SLC4A3P48751 1232 aa16.31■□□□□ 0.2
NPHP3-ACAD11-201ENST00000471702 FYB1O15117 783 aa16.31■□□□□ 0.2
NPHP3-ACAD11-201ENST00000471702 ODF2Q5BJF6 829 aa16.31■□□□□ 0.2
NPHP3-ACAD11-201ENST00000471702 TPM2P07951 284 aa16.31■□□□□ 0.2
NPHP3-ACAD11-201ENST00000471702 ZNF592Q92610 1267 aa16.31■□□□□ 0.2
NPHP3-ACAD11-201ENST00000471702 HDAC5Q9UQL6 1122 aa16.31■□□□□ 0.2
NPHP3-ACAD11-201ENST00000471702 TERF2IPQ9NYB0 399 aa16.31■□□□□ 0.2
NPHP3-ACAD11-201ENST00000471702 HSPA5P11021 654 aaKnown RBP16.31■□□□□ 0.2
NPHP3-ACAD11-201ENST00000471702 TRAK1Q9UPV9 953 aa16.3■□□□□ 0.2
NPHP3-ACAD11-201ENST00000471702 CHMP4AQ9BY43 222 aa16.3■□□□□ 0.2
NPHP3-ACAD11-201ENST00000471702 PMFBP1Q8TBY8 1022 aa16.29■□□□□ 0.2
NPHP3-ACAD11-201ENST00000471702 ST18O60284 1047 aa16.29■□□□□ 0.2
NPHP3-ACAD11-201ENST00000471702 KIF3AQ9Y496 699 aa16.29■□□□□ 0.2
NPHP3-ACAD11-201ENST00000471702 GOLGA6L3A6NEY3 463 aa16.29■□□□□ 0.2
NPHP3-ACAD11-201ENST00000471702 ZFYVE27Q5T4F4 411 aa16.29■□□□□ 0.2
NPHP3-ACAD11-201ENST00000471702 BECN2A8MW95 431 aa16.28■□□□□ 0.2
NPHP3-ACAD11-201ENST00000471702 WASHC2CQ9Y4E1 1318 aa16.28■□□□□ 0.2
NPHP3-ACAD11-201ENST00000471702 KIF27Q86VH2 1401 aa16.28■□□□□ 0.2
NPHP3-ACAD11-201ENST00000471702 PTMSP20962 102 aa16.28■□□□□ 0.2
NPHP3-ACAD11-201ENST00000471702 C9orf78Q9NZ63 289 aaPredicted RBP16.28■□□□□ 0.2
NPHP3-ACAD11-201ENST00000471702 ANKRD45Q5TZF3 282 aa16.27■□□□□ 0.2
NPHP3-ACAD11-201ENST00000471702 R3HCC1Q9Y3T6 440 aaKnown RBP16.27■□□□□ 0.2
NPHP3-ACAD11-201ENST00000471702 TPM1P09493 284 aa16.27■□□□□ 0.19
NPHP3-ACAD11-201ENST00000471702 KDM4AO75164 1064 aa16.26■□□□□ 0.19
NPHP3-ACAD11-201ENST00000471702 TEFQ10587 303 aa16.26■□□□□ 0.19
NPHP3-ACAD11-201ENST00000471702 TTC5Q8N0Z6 440 aa16.26■□□□□ 0.19
NPHP3-ACAD11-201ENST00000471702 PHF14O94880 888 aa16.26■□□□□ 0.19
NPHP3-ACAD11-201ENST00000471702 CT47A1Q5JQC4 288 aaPredicted RBP16.25■□□□□ 0.19
NPHP3-ACAD11-201ENST00000471702 RBM19Q9Y4C8 960 aaKnown RBP16.25■□□□□ 0.19
NPHP3-ACAD11-201ENST00000471702 NAP1L1P55209 391 aaKnown RBP16.25■□□□□ 0.19
NPHP3-ACAD11-201ENST00000471702 TCERG1O14776 1098 aaKnown RBP16.25■□□□□ 0.19
NPHP3-ACAD11-201ENST00000471702 TRIM29Q14134 588 aa16.25■□□□□ 0.19
NPHP3-ACAD11-201ENST00000471702 CCDC180Q9P1Z9 1646 aa16.24■□□□□ 0.19
NPHP3-ACAD11-201ENST00000471702 IKQ13123 557 aaPredicted RBP16.23■□□□□ 0.19
NPHP3-ACAD11-201ENST00000471702 CCAR1Q8IX12 1150 aaKnown RBP16.23■□□□□ 0.19
NPHP3-ACAD11-201ENST00000471702 NFXL1Q6ZNB6 911 aa16.23■□□□□ 0.19
NPHP3-ACAD11-201ENST00000471702 PLIN1O60240 522 aa16.23■□□□□ 0.19
NPHP3-ACAD11-201ENST00000471702 WWC2Q6AWC2 1192 aa16.23■□□□□ 0.19
NPHP3-ACAD11-201ENST00000471702 RBM33Q96EV2 1170 aaKnown RBP16.22■□□□□ 0.19
NPHP3-ACAD11-201ENST00000471702 NEXNQ0ZGT2 675 aa16.22■□□□□ 0.19
NPHP3-ACAD11-201ENST00000471702 CCDC27Q2M243 656 aa16.22■□□□□ 0.19
NPHP3-ACAD11-201ENST00000471702 NUP155O75694 1391 aa16.22■□□□□ 0.19
NPHP3-ACAD11-201ENST00000471702 CCDC70Q6NSX1 233 aa16.22■□□□□ 0.19
NPHP3-ACAD11-201ENST00000471702 HNRNPMP52272 730 aaKnown RBP eCLIP16.22■□□□□ 0.19
NPHP3-ACAD11-201ENST00000471702 BAZ1BQ9UIG0 1483 aaKnown RBP16.21■□□□□ 0.19
NPHP3-ACAD11-201ENST00000471702 CENPJQ9HC77 1338 aaPredicted RBP16.21■□□□□ 0.19
NPHP3-ACAD11-201ENST00000471702 FAM177BA6PVY3 158 aa16.21■□□□□ 0.18
NPHP3-ACAD11-201ENST00000471702 IPO7O95373 1038 aaKnown RBP16.21■□□□□ 0.18
NPHP3-ACAD11-201ENST00000471702 TMEM132AQ24JP5 1023 aa16.21■□□□□ 0.18
NPHP3-ACAD11-201ENST00000471702 DIAPH3Q9NSV4 1193 aa16.21■□□□□ 0.18
NPHP3-ACAD11-201ENST00000471702 CPLX1O14810 134 aa16.2■□□□□ 0.18
NPHP3-ACAD11-201ENST00000471702 PSME1Q06323 249 aa16.2■□□□□ 0.18
NPHP3-ACAD11-201ENST00000471702 LMOD3Q0VAK6 560 aa16.19■□□□□ 0.18
NPHP3-ACAD11-201ENST00000471702 CPLX2Q6PUV4 134 aaKnown RBP16.19■□□□□ 0.18
NPHP3-ACAD11-201ENST00000471702 TRDNQ13061 729 aa16.18■□□□□ 0.18
NPHP3-ACAD11-201ENST00000471702 SKIDA1Q1XH10 827 aa16.17■□□□□ 0.18
NPHP3-ACAD11-201ENST00000471702 DDX49Q9Y6V7 483 aaKnown RBP16.17■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms