RNA–Protein interactions for RNA: ENST00000471439.1

VPS13A-210, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 510 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-210ENST00000471439 TYW1BQ6NUM6 668 aa9.67□□□□□ -0.86
VPS13A-210ENST00000471439 MLLT3P42568 568 aaPredicted RBP9.66□□□□□ -0.86
VPS13A-210ENST00000471439 ADGRD1Q6QNK2 874 aa9.66□□□□□ -0.86
VPS13A-210ENST00000471439 PTPREP23469 700 aa9.65□□□□□ -0.86
VPS13A-210ENST00000471439 TSR1Q2NL82 804 aaKnown RBP9.65□□□□□ -0.86
VPS13A-210ENST00000471439 ARHGEF1Q92888 912 aaKnown RBP9.65□□□□□ -0.86
VPS13A-210ENST00000471439 EN1Q05925 392 aaPredicted RBP9.64□□□□□ -0.87
VPS13A-210ENST00000471439 OSBPP22059 807 aa9.62□□□□□ -0.87
VPS13A-210ENST00000471439 PROX2Q3B8N5 592 aa9.62□□□□□ -0.87
VPS13A-210ENST00000471439 P3H3Q8IVL6 736 aa9.62□□□□□ -0.87
VPS13A-210ENST00000471439 FBXW7Q969H0 707 aa9.62□□□□□ -0.87
VPS13A-210ENST00000471439 EPAS1Q99814 870 aa9.62□□□□□ -0.87
VPS13A-210ENST00000471439 ZBED2Q9BTP6 218 aa9.62□□□□□ -0.87
VPS13A-210ENST00000471439 CDHR5Q9HBB8 845 aa9.62□□□□□ -0.87
VPS13A-210ENST00000471439 SEMA3EO15041 775 aa9.61□□□□□ -0.87
VPS13A-210ENST00000471439 C6orf132Q5T0Z8 1188 aa9.61□□□□□ -0.87
VPS13A-210ENST00000471439 VPS9D1Q9Y2B5 631 aa9.61□□□□□ -0.87
VPS13A-210ENST00000471439 MAP3K7O43318 606 aa9.6□□□□□ -0.87
VPS13A-210ENST00000471439 HRO43593 1189 aa9.6□□□□□ -0.87
VPS13A-210ENST00000471439 KCNH8Q96L42 1107 aa9.6□□□□□ -0.87
VPS13A-210ENST00000471439 MYT1LQ9UL68 1186 aa9.6□□□□□ -0.87
VPS13A-210ENST00000471439 PPP1R3GB7ZBB8 358 aa9.59□□□□□ -0.87
VPS13A-210ENST00000471439 VSIG10Q8N0Z9 540 aa9.59□□□□□ -0.87
VPS13A-210ENST00000471439 TK2O00142 265 aa9.57□□□□□ -0.88
VPS13A-210ENST00000471439 RNF166Q96A37 237 aaPredicted RBP9.57□□□□□ -0.88
VPS13A-210ENST00000471439 SLC4A5Q9BY07 1137 aa9.53□□□□□ -0.88
VPS13A-210ENST00000471439 BHMG1C9JSJ3 638 aaPredicted RBP9.52□□□□□ -0.89
VPS13A-210ENST00000471439 C3orf80F5H4A9 247 aa9.51□□□□□ -0.89
VPS13A-210ENST00000471439 FAM198AQ9UFP1 575 aa9.51□□□□□ -0.89
VPS13A-210ENST00000471439 TSKSQ9UJT2 592 aa9.51□□□□□ -0.89
VPS13A-210ENST00000471439 TESPA1A2RU30 521 aaPredicted RBP9.5□□□□□ -0.89
VPS13A-210ENST00000471439 NPDC1Q9NQX5 325 aaPredicted RBP9.49□□□□□ -0.89
VPS13A-210ENST00000471439 KIAA1468Q9P260 1216 aa9.49□□□□□ -0.89
VPS13A-210ENST00000471439 SEPT9Q9UHD8 586 aaPredicted RBP9.49□□□□□ -0.89
VPS13A-210ENST00000471439 TRIM6-TRIM34B2RNG4 842 aa9.48□□□□□ -0.89
VPS13A-210ENST00000471439 RBM26Q5T8P6 1007 aaKnown RBP9.48□□□□□ -0.89
VPS13A-210ENST00000471439 KCTD12Q96CX2 325 aaKnown RBP9.48□□□□□ -0.89
VPS13A-210ENST00000471439 CDCA7LQ96GN5 454 aa9.47□□□□□ -0.89
VPS13A-210ENST00000471439 RABGEF1Q9UJ41 708 aa9.47□□□□□ -0.89
VPS13A-210ENST00000471439 SMAPO00193 183 aa9.45□□□□□ -0.9
VPS13A-210ENST00000471439 PRSS12P56730 875 aa9.45□□□□□ -0.9
VPS13A-210ENST00000471439 MRPL50Q8N5N7 158 aaKnown RBP9.45□□□□□ -0.9
VPS13A-210ENST00000471439 PADI6Q6TGC4 694 aa9.44□□□□□ -0.9
VPS13A-210ENST00000471439 STAC3Q96MF2 364 aa9.44□□□□□ -0.9
VPS13A-210ENST00000471439 NBPF3Q9H094 633 aa9.44□□□□□ -0.9
VPS13A-210ENST00000471439 NUTM2FA1L443 756 aa9.43□□□□□ -0.9
VPS13A-210ENST00000471439 PTGDRQ13258 359 aa9.42□□□□□ -0.9
VPS13A-210ENST00000471439 WNT2BQ93097 391 aa9.4□□□□□ -0.9
VPS13A-210ENST00000471439 GPR37O15354 613 aa9.39□□□□□ -0.91
VPS13A-210ENST00000471439 BCAMP50895 628 aa9.39□□□□□ -0.91
VPS13A-210ENST00000471439 PTPN5P54829 565 aa9.39□□□□□ -0.91
VPS13A-210ENST00000471439 FAM161AQ3B820 660 aa9.39□□□□□ -0.91
VPS13A-210ENST00000471439 THSD4Q6ZMP0 1018 aa9.39□□□□□ -0.91
VPS13A-210ENST00000471439 TTC13Q8NBP0 860 aa9.39□□□□□ -0.91
VPS13A-210ENST00000471439 CERKQ8TCT0 537 aa9.39□□□□□ -0.91
VPS13A-210ENST00000471439 GOLGA8CPA6NN73 597 aa9.38□□□□□ -0.91
VPS13A-210ENST00000471439 ONECUT3O60422 494 aaPredicted RBP9.38□□□□□ -0.91
VPS13A-210ENST00000471439 NUDT18Q6ZVK8 323 aa9.38□□□□□ -0.91
VPS13A-210ENST00000471439 ZFRQ96KR1 1074 aaKnown RBP9.38□□□□□ -0.91
VPS13A-210ENST00000471439 PNMA3Q9UL41 463 aa9.38□□□□□ -0.91
VPS13A-210ENST00000471439 PACS2Q86VP3 889 aa9.37□□□□□ -0.91
VPS13A-210ENST00000471439 TATDN2Q93075 761 aa9.37□□□□□ -0.91
VPS13A-210ENST00000471439 CECR2Q9BXF3 1484 aa9.36□□□□□ -0.91
VPS13A-210ENST00000471439 FECHP22830 423 aa9.36□□□□□ -0.91
VPS13A-210ENST00000471439 FAM98CQ17RN3 349 aaKnown RBP9.36□□□□□ -0.91
VPS13A-210ENST00000471439 RBM27Q9P2N5 1060 aaKnown RBP9.36□□□□□ -0.91
VPS13A-210ENST00000471439 NBPF26B4DH59 902 aa9.35□□□□□ -0.91
VPS13A-210ENST00000471439 FCHSD2O94868 740 aa9.34□□□□□ -0.91
VPS13A-210ENST00000471439 LAPTM4BQ86VI4 370 aa9.34□□□□□ -0.91
VPS13A-210ENST00000471439 ANKK1Q8NFD2 765 aa9.34□□□□□ -0.91
VPS13A-210ENST00000471439 SMYD5Q6GMV2 418 aa9.33□□□□□ -0.92
VPS13A-210ENST00000471439 HCSTQ9UBK5 93 aa9.33□□□□□ -0.92
VPS13A-210ENST00000471439 SAMD7Q7Z3H4 446 aa9.32□□□□□ -0.92
VPS13A-210ENST00000471439 SOWAHBA6NEL2 793 aa9.31□□□□□ -0.92
VPS13A-210ENST00000471439 GPIHBP1Q8IV16 184 aa9.31□□□□□ -0.92
VPS13A-210ENST00000471439 EYA1Q99502 592 aa9.3□□□□□ -0.92
VPS13A-210ENST00000471439 ADGRG1Q9Y653 693 aa9.3□□□□□ -0.92
VPS13A-210ENST00000471439 WBP1LQ9NX94 342 aa9.29□□□□□ -0.92
VPS13A-210ENST00000471439 HIC1Q14526 733 aa9.28□□□□□ -0.92
VPS13A-210ENST00000471439 LRCH3Q96II8 777 aa9.28□□□□□ -0.92
VPS13A-210ENST00000471439 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.28□□□□□ -0.92
VPS13A-210ENST00000471439 HPS5Q9UPZ3 1129 aa9.28□□□□□ -0.92
VPS13A-210ENST00000471439 GNPATO15228 680 aa9.27□□□□□ -0.93
VPS13A-210ENST00000471439 RNF40O75150 1001 aa9.27□□□□□ -0.93
VPS13A-210ENST00000471439 SWT1Q5T5J6 900 aaKnown RBP9.27□□□□□ -0.93
VPS13A-210ENST00000471439 RB1CC1Q8TDY2 1594 aa9.27□□□□□ -0.93
VPS13A-210ENST00000471439 CUX2O14529 1486 aa9.27□□□□□ -0.93
VPS13A-210ENST00000471439 NLRP7Q8WX94 980 aa9.26□□□□□ -0.93
VPS13A-210ENST00000471439 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.25□□□□□ -0.93
VPS13A-210ENST00000471439 LMOD2Q6P5Q4 547 aa9.24□□□□□ -0.93
VPS13A-210ENST00000471439 CC2D2AQ9P2K1 1620 aa9.23□□□□□ -0.93
VPS13A-210ENST00000471439 RCCD1A6NED2 376 aa9.22□□□□□ -0.93
VPS13A-210ENST00000471439 PXYLP1Q8TE99 480 aa9.22□□□□□ -0.93
VPS13A-210ENST00000471439 PHOX2BQ99453 314 aa9.22□□□□□ -0.93
VPS13A-210ENST00000471439 PLA2G2EQ9NZK7 142 aa9.22□□□□□ -0.93
VPS13A-210ENST00000471439 TSR3Q9UJK0 312 aaKnown RBP9.22□□□□□ -0.93
VPS13A-210ENST00000471439 METTL3Q86U44 580 aaKnown RBP9.21□□□□□ -0.94
VPS13A-210ENST00000471439 RBM46Q8TBY0 533 aaKnown RBP9.21□□□□□ -0.94
VPS13A-210ENST00000471439 TULP1O00294 542 aaPredicted RBP9.19□□□□□ -0.94
VPS13A-210ENST00000471439 DNAJB2P25686 324 aa9.19□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms