RNA–Protein interactions for RNA: ENST00000471414.1

COPS3-206, Transcript of COP9 signalosome subunit 3, humanhuman

TSL 2

Gene COPS3, Length 455 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS3-206ENST00000471414 VPS9D1Q9Y2B5 631 aa8.82□□□□□ -1
COPS3-206ENST00000471414 DDX12PQ92771 950 aa8.81□□□□□ -1
COPS3-206ENST00000471414 PPP1R3GB7ZBB8 358 aa8.8□□□□□ -1
COPS3-206ENST00000471414 COL9A1P20849 921 aa8.8□□□□□ -1
COPS3-206ENST00000471414 PRIM1P49642 420 aaKnown RBP8.8□□□□□ -1
COPS3-206ENST00000471414 RNF166Q96A37 237 aaPredicted RBP8.8□□□□□ -1
COPS3-206ENST00000471414 KCNH8Q96L42 1107 aa8.8□□□□□ -1
COPS3-206ENST00000471414 BHMG1C9JSJ3 638 aaPredicted RBP8.79□□□□□ -1
COPS3-206ENST00000471414 EN1Q05925 392 aaPredicted RBP8.79□□□□□ -1
COPS3-206ENST00000471414 C6orf132Q5T0Z8 1188 aa8.78□□□□□ -1
COPS3-206ENST00000471414 OSBPP22059 807 aa8.77□□□□□ -1.01
COPS3-206ENST00000471414 NBR1Q14596 966 aa8.77□□□□□ -1.01
COPS3-206ENST00000471414 P3H3Q8IVL6 736 aa8.77□□□□□ -1.01
COPS3-206ENST00000471414 KDM2AQ9Y2K7 1162 aa8.77□□□□□ -1.01
COPS3-206ENST00000471414 HAP1P54257 671 aaPredicted RBP8.75□□□□□ -1.01
COPS3-206ENST00000471414 TSR1Q2NL82 804 aaKnown RBP8.74□□□□□ -1.01
COPS3-206ENST00000471414 RBM33Q96EV2 1170 aaKnown RBP8.73□□□□□ -1.01
COPS3-206ENST00000471414 GRXCR2A6NFK2 248 aa8.72□□□□□ -1.01
COPS3-206ENST00000471414 ONECUT3O60422 494 aaPredicted RBP8.72□□□□□ -1.01
COPS3-206ENST00000471414 PROX2Q3B8N5 592 aa8.72□□□□□ -1.01
COPS3-206ENST00000471414 MAP3K7O43318 606 aa8.71□□□□□ -1.02
COPS3-206ENST00000471414 MLLT3P42568 568 aaPredicted RBP8.71□□□□□ -1.02
COPS3-206ENST00000471414 RABGEF1Q9UJ41 708 aa8.71□□□□□ -1.02
COPS3-206ENST00000471414 VSIG10Q8N0Z9 540 aa8.7□□□□□ -1.02
COPS3-206ENST00000471414 TRIM6-TRIM34B2RNG4 842 aa8.69□□□□□ -1.02
COPS3-206ENST00000471414 CDHR5Q9HBB8 845 aa8.68□□□□□ -1.02
COPS3-206ENST00000471414 CERKQ8TCT0 537 aa8.67□□□□□ -1.02
COPS3-206ENST00000471414 NPDC1Q9NQX5 325 aaPredicted RBP8.67□□□□□ -1.02
COPS3-206ENST00000471414 SEMA3EO15041 775 aa8.66□□□□□ -1.02
COPS3-206ENST00000471414 NBPF3Q9H094 633 aa8.66□□□□□ -1.02
COPS3-206ENST00000471414 KIAA1468Q9P260 1216 aa8.66□□□□□ -1.02
COPS3-206ENST00000471414 RBM27Q9P2N5 1060 aaKnown RBP8.66□□□□□ -1.02
COPS3-206ENST00000471414 TSKSQ9UJT2 592 aa8.66□□□□□ -1.02
COPS3-206ENST00000471414 LAPTM4BQ86VI4 370 aa8.65□□□□□ -1.02
COPS3-206ENST00000471414 MRPL50Q8N5N7 158 aaKnown RBP8.65□□□□□ -1.02
COPS3-206ENST00000471414 FAM198AQ9UFP1 575 aa8.65□□□□□ -1.02
COPS3-206ENST00000471414 TESPA1A2RU30 521 aaPredicted RBP8.64□□□□□ -1.03
COPS3-206ENST00000471414 PRSS12P56730 875 aa8.64□□□□□ -1.03
COPS3-206ENST00000471414 TTC13Q8NBP0 860 aa8.64□□□□□ -1.03
COPS3-206ENST00000471414 CDCA7LQ96GN5 454 aa8.63□□□□□ -1.03
COPS3-206ENST00000471414 KCTD12Q96CX2 325 aaKnown RBP8.62□□□□□ -1.03
COPS3-206ENST00000471414 STAC3Q96MF2 364 aa8.62□□□□□ -1.03
COPS3-206ENST00000471414 HCSTQ9UBK5 93 aa8.62□□□□□ -1.03
COPS3-206ENST00000471414 THSD4Q6ZMP0 1018 aa8.61□□□□□ -1.03
COPS3-206ENST00000471414 C3orf80F5H4A9 247 aa8.6□□□□□ -1.03
COPS3-206ENST00000471414 PTGDRQ13258 359 aa8.59□□□□□ -1.03
COPS3-206ENST00000471414 FAM98CQ17RN3 349 aaKnown RBP8.59□□□□□ -1.03
COPS3-206ENST00000471414 WNT2BQ93097 391 aa8.59□□□□□ -1.03
COPS3-206ENST00000471414 PACS2Q86VP3 889 aa8.58□□□□□ -1.04
COPS3-206ENST00000471414 ZFRQ96KR1 1074 aaKnown RBP8.58□□□□□ -1.04
COPS3-206ENST00000471414 SEPT9Q9UHD8 586 aaPredicted RBP8.58□□□□□ -1.04
COPS3-206ENST00000471414 PADI6Q6TGC4 694 aa8.56□□□□□ -1.04
COPS3-206ENST00000471414 SOWAHBA6NEL2 793 aa8.55□□□□□ -1.04
COPS3-206ENST00000471414 GOLGA8CPA6NN73 597 aa8.55□□□□□ -1.04
COPS3-206ENST00000471414 TATDN2Q93075 761 aa8.55□□□□□ -1.04
COPS3-206ENST00000471414 NBPF26B4DH59 902 aa8.54□□□□□ -1.04
COPS3-206ENST00000471414 GPR37O15354 613 aa8.54□□□□□ -1.04
COPS3-206ENST00000471414 ANKK1Q8NFD2 765 aa8.54□□□□□ -1.04
COPS3-206ENST00000471414 RBM26Q5T8P6 1007 aaKnown RBP8.53□□□□□ -1.04
COPS3-206ENST00000471414 SMAPO00193 183 aa8.52□□□□□ -1.05
COPS3-206ENST00000471414 BCAMP50895 628 aa8.52□□□□□ -1.05
COPS3-206ENST00000471414 NUDT18Q6ZVK8 323 aa8.52□□□□□ -1.05
COPS3-206ENST00000471414 EYA1Q99502 592 aa8.52□□□□□ -1.05
COPS3-206ENST00000471414 SMYD5Q6GMV2 418 aa8.51□□□□□ -1.05
COPS3-206ENST00000471414 PNMA3Q9UL41 463 aa8.51□□□□□ -1.05
COPS3-206ENST00000471414 NUTM2FA1L443 756 aa8.5□□□□□ -1.05
COPS3-206ENST00000471414 FCHSD2O94868 740 aa8.5□□□□□ -1.05
COPS3-206ENST00000471414 PTPN5P54829 565 aa8.5□□□□□ -1.05
COPS3-206ENST00000471414 ADGRG1Q9Y653 693 aa8.49□□□□□ -1.05
COPS3-206ENST00000471414 IFFO2Q5TF58 517 aa8.48□□□□□ -1.05
COPS3-206ENST00000471414 NYAP1Q6ZVC0 841 aa8.48□□□□□ -1.05
COPS3-206ENST00000471414 CDKN2AIPQ9NXV6 580 aaPredicted RBP8.48□□□□□ -1.05
COPS3-206ENST00000471414 HIC1Q14526 733 aa8.47□□□□□ -1.05
COPS3-206ENST00000471414 SAMD7Q7Z3H4 446 aa8.47□□□□□ -1.05
COPS3-206ENST00000471414 LRCH3Q96II8 777 aa8.47□□□□□ -1.05
COPS3-206ENST00000471414 WBP1LQ9NX94 342 aa8.47□□□□□ -1.05
COPS3-206ENST00000471414 PLA2G2EQ9NZK7 142 aa8.47□□□□□ -1.05
COPS3-206ENST00000471414 TSR3Q9UJK0 312 aaKnown RBP8.47□□□□□ -1.05
COPS3-206ENST00000471414 HPS5Q9UPZ3 1129 aa8.44□□□□□ -1.06
COPS3-206ENST00000471414 GNPATO15228 680 aa8.43□□□□□ -1.06
COPS3-206ENST00000471414 ITGBL1O95965 494 aaPredicted RBP8.43□□□□□ -1.06
COPS3-206ENST00000471414 FECHP22830 423 aa8.43□□□□□ -1.06
COPS3-206ENST00000471414 FAM161AQ3B820 660 aa8.41□□□□□ -1.06
COPS3-206ENST00000471414 SWT1Q5T5J6 900 aaKnown RBP8.41□□□□□ -1.06
COPS3-206ENST00000471414 GPIHBP1Q8IV16 184 aa8.41□□□□□ -1.06
COPS3-206ENST00000471414 RBM46Q8TBY0 533 aaKnown RBP8.41□□□□□ -1.06
COPS3-206ENST00000471414 PXYLP1Q8TE99 480 aa8.41□□□□□ -1.06
COPS3-206ENST00000471414 TMEM134Q9H6X4 195 aa8.41□□□□□ -1.06
COPS3-206ENST00000471414 DNAJB2P25686 324 aa8.4□□□□□ -1.06
COPS3-206ENST00000471414 RCCD1A6NED2 376 aa8.39□□□□□ -1.07
COPS3-206ENST00000471414 METTL3Q86U44 580 aaKnown RBP8.39□□□□□ -1.07
COPS3-206ENST00000471414 OATP04181 439 aa8.38□□□□□ -1.07
COPS3-206ENST00000471414 PPP4CP60510 307 aa8.38□□□□□ -1.07
COPS3-206ENST00000471414 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.38□□□□□ -1.07
COPS3-206ENST00000471414 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP8.37□□□□□ -1.07
COPS3-206ENST00000471414 SLF2Q8IX21 1173 aa8.37□□□□□ -1.07
COPS3-206ENST00000471414 APLP1P51693 650 aa8.36□□□□□ -1.07
COPS3-206ENST00000471414 HDGFP51858 240 aaKnown RBP8.35□□□□□ -1.07
COPS3-206ENST00000471414 NECTIN2Q92692 538 aa8.35□□□□□ -1.07
COPS3-206ENST00000471414 PHOX2BQ99453 314 aa8.35□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms