RNA–Protein interactions for RNA: ENST00000471307.6

CCDC39-202, Transcript of coiled-coil domain containing 39, humanhuman

TSL 3

Gene CCDC39, Length 783 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-202ENST00000471307 SLC4A5Q9BY07 1137 aa14.62□□□□□ -0.07
CCDC39-202ENST00000471307 DMRTA1Q5VZB9 504 aa14.61□□□□□ -0.07
CCDC39-202ENST00000471307 ADGRD1Q6QNK2 874 aa14.6□□□□□ -0.07
CCDC39-202ENST00000471307 EN1Q05925 392 aaPredicted RBP14.59□□□□□ -0.07
CCDC39-202ENST00000471307 GRXCR2A6NFK2 248 aa14.58□□□□□ -0.08
CCDC39-202ENST00000471307 PPP1R3GB7ZBB8 358 aa14.58□□□□□ -0.08
CCDC39-202ENST00000471307 MMRN1Q13201 1228 aa14.58□□□□□ -0.08
CCDC39-202ENST00000471307 C6orf132Q5T0Z8 1188 aa14.57□□□□□ -0.08
CCDC39-202ENST00000471307 ZBED2Q9BTP6 218 aa14.54□□□□□ -0.08
CCDC39-202ENST00000471307 VPS9D1Q9Y2B5 631 aa14.54□□□□□ -0.08
CCDC39-202ENST00000471307 MAP3K7O43318 606 aa14.53□□□□□ -0.08
CCDC39-202ENST00000471307 OSBPP22059 807 aa14.53□□□□□ -0.08
CCDC39-202ENST00000471307 RBM33Q96EV2 1170 aaKnown RBP14.53□□□□□ -0.08
CCDC39-202ENST00000471307 HRO43593 1189 aa14.52□□□□□ -0.09
CCDC39-202ENST00000471307 MYT1LQ9UL68 1186 aa14.51□□□□□ -0.09
CCDC39-202ENST00000471307 COL9A1P20849 921 aa14.49□□□□□ -0.09
CCDC39-202ENST00000471307 CERKQ8TCT0 537 aa14.48□□□□□ -0.09
CCDC39-202ENST00000471307 ONECUT3O60422 494 aaPredicted RBP14.47□□□□□ -0.09
CCDC39-202ENST00000471307 MLLT3P42568 568 aaPredicted RBP14.47□□□□□ -0.09
CCDC39-202ENST00000471307 SEMA3EO15041 775 aa14.46□□□□□ -0.09
CCDC39-202ENST00000471307 PRIM1P49642 420 aaKnown RBP14.46□□□□□ -0.09
CCDC39-202ENST00000471307 TSR1Q2NL82 804 aaKnown RBP14.46□□□□□ -0.09
CCDC39-202ENST00000471307 RNF166Q96A37 237 aaPredicted RBP14.45□□□□□ -0.1
CCDC39-202ENST00000471307 STAC3Q96MF2 364 aa14.44□□□□□ -0.1
CCDC39-202ENST00000471307 RABGEF1Q9UJ41 708 aa14.44□□□□□ -0.1
CCDC39-202ENST00000471307 BHMG1C9JSJ3 638 aaPredicted RBP14.43□□□□□ -0.1
CCDC39-202ENST00000471307 TESPA1A2RU30 521 aaPredicted RBP14.42□□□□□ -0.1
CCDC39-202ENST00000471307 SMYD5Q6GMV2 418 aa14.42□□□□□ -0.1
CCDC39-202ENST00000471307 NBPF3Q9H094 633 aa14.42□□□□□ -0.1
CCDC39-202ENST00000471307 TRIM6-TRIM34B2RNG4 842 aa14.4□□□□□ -0.1
CCDC39-202ENST00000471307 PROX2Q3B8N5 592 aa14.4□□□□□ -0.1
CCDC39-202ENST00000471307 RBM27Q9P2N5 1060 aaKnown RBP14.38□□□□□ -0.11
CCDC39-202ENST00000471307 MRPL50Q8N5N7 158 aaKnown RBP14.36□□□□□ -0.11
CCDC39-202ENST00000471307 CDHR5Q9HBB8 845 aa14.36□□□□□ -0.11
CCDC39-202ENST00000471307 PRSS12P56730 875 aa14.35□□□□□ -0.11
CCDC39-202ENST00000471307 LAPTM4BQ86VI4 370 aa14.34□□□□□ -0.11
CCDC39-202ENST00000471307 CDCA7LQ96GN5 454 aa14.34□□□□□ -0.11
CCDC39-202ENST00000471307 KIAA1468Q9P260 1216 aa14.34□□□□□ -0.11
CCDC39-202ENST00000471307 PACS2Q86VP3 889 aa14.33□□□□□ -0.12
CCDC39-202ENST00000471307 NPDC1Q9NQX5 325 aaPredicted RBP14.32□□□□□ -0.12
CCDC39-202ENST00000471307 TSKSQ9UJT2 592 aa14.31□□□□□ -0.12
CCDC39-202ENST00000471307 GOLGA8CPA6NN73 597 aa14.29□□□□□ -0.12
CCDC39-202ENST00000471307 PTGDRQ13258 359 aa14.28□□□□□ -0.12
CCDC39-202ENST00000471307 TULP1O00294 542 aaPredicted RBP14.27□□□□□ -0.13
CCDC39-202ENST00000471307 NUTM2FA1L443 756 aa14.26□□□□□ -0.13
CCDC39-202ENST00000471307 TTC13Q8NBP0 860 aa14.25□□□□□ -0.13
CCDC39-202ENST00000471307 KCTD12Q96CX2 325 aaKnown RBP14.25□□□□□ -0.13
CCDC39-202ENST00000471307 NBPF26B4DH59 902 aa14.24□□□□□ -0.13
CCDC39-202ENST00000471307 FAM98CQ17RN3 349 aaKnown RBP14.24□□□□□ -0.13
CCDC39-202ENST00000471307 HCSTQ9UBK5 93 aa14.24□□□□□ -0.13
CCDC39-202ENST00000471307 FCHSD2O94868 740 aa14.23□□□□□ -0.13
CCDC39-202ENST00000471307 WNT2BQ93097 391 aa14.23□□□□□ -0.13
CCDC39-202ENST00000471307 RBM26Q5T8P6 1007 aaKnown RBP14.22□□□□□ -0.13
CCDC39-202ENST00000471307 PADI6Q6TGC4 694 aa14.22□□□□□ -0.13
CCDC39-202ENST00000471307 FAM198AQ9UFP1 575 aa14.22□□□□□ -0.13
CCDC39-202ENST00000471307 SEPT9Q9UHD8 586 aaPredicted RBP14.21□□□□□ -0.13
CCDC39-202ENST00000471307 ANKK1Q8NFD2 765 aa14.2□□□□□ -0.14
CCDC39-202ENST00000471307 TATDN2Q93075 761 aa14.2□□□□□ -0.14
CCDC39-202ENST00000471307 ZFRQ96KR1 1074 aaKnown RBP14.2□□□□□ -0.14
CCDC39-202ENST00000471307 SLC24A1O60721 1099 aa14.19□□□□□ -0.14
CCDC39-202ENST00000471307 THSD4Q6ZMP0 1018 aa14.19□□□□□ -0.14
CCDC39-202ENST00000471307 HIC1Q14526 733 aa14.18□□□□□ -0.14
CCDC39-202ENST00000471307 PNMA3Q9UL41 463 aa14.18□□□□□ -0.14
CCDC39-202ENST00000471307 NUDT18Q6ZVK8 323 aa14.15□□□□□ -0.14
CCDC39-202ENST00000471307 SOWAHBA6NEL2 793 aa14.13□□□□□ -0.15
CCDC39-202ENST00000471307 GPIHBP1Q8IV16 184 aa14.13□□□□□ -0.15
CCDC39-202ENST00000471307 SMAPO00193 183 aa14.11□□□□□ -0.15
CCDC39-202ENST00000471307 GNPATO15228 680 aa14.11□□□□□ -0.15
CCDC39-202ENST00000471307 GPR37O15354 613 aa14.11□□□□□ -0.15
CCDC39-202ENST00000471307 C3orf80F5H4A9 247 aa14.1□□□□□ -0.15
CCDC39-202ENST00000471307 LRCH3Q96II8 777 aa14.1□□□□□ -0.15
CCDC39-202ENST00000471307 EYA1Q99502 592 aa14.09□□□□□ -0.15
CCDC39-202ENST00000471307 CDKN2AIPQ9NXV6 580 aaPredicted RBP14.09□□□□□ -0.15
CCDC39-202ENST00000471307 HDGFP51858 240 aaKnown RBP14.08□□□□□ -0.16
CCDC39-202ENST00000471307 PTPN5P54829 565 aa14.08□□□□□ -0.16
CCDC39-202ENST00000471307 RBM46Q8TBY0 533 aaKnown RBP14.08□□□□□ -0.16
CCDC39-202ENST00000471307 ADGRG1Q9Y653 693 aa14.08□□□□□ -0.16
CCDC39-202ENST00000471307 NYAP1Q6ZVC0 841 aa14.07□□□□□ -0.16
CCDC39-202ENST00000471307 BCAMP50895 628 aa14.06□□□□□ -0.16
CCDC39-202ENST00000471307 DHX30Q7L2E3 1194 aaKnown RBP eCLIP14.06□□□□□ -0.16
CCDC39-202ENST00000471307 OATP04181 439 aa14.04□□□□□ -0.16
CCDC39-202ENST00000471307 SAMD7Q7Z3H4 446 aa14.04□□□□□ -0.16
CCDC39-202ENST00000471307 TSR3Q9UJK0 312 aaKnown RBP14.04□□□□□ -0.16
CCDC39-202ENST00000471307 DNAJB2P25686 324 aa14.01□□□□□ -0.17
CCDC39-202ENST00000471307 NECTIN2Q92692 538 aa14.01□□□□□ -0.17
CCDC39-202ENST00000471307 SLC4A3P48751 1232 aa14□□□□□ -0.17
CCDC39-202ENST00000471307 LMOD2Q6P5Q4 547 aa13.99□□□□□ -0.17
CCDC39-202ENST00000471307 HPS5Q9UPZ3 1129 aa13.99□□□□□ -0.17
CCDC39-202ENST00000471307 FECHP22830 423 aa13.98□□□□□ -0.17
CCDC39-202ENST00000471307 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.97□□□□□ -0.17
CCDC39-202ENST00000471307 SLF2Q8IX21 1173 aa13.97□□□□□ -0.17
CCDC39-202ENST00000471307 PXYLP1Q8TE99 480 aa13.97□□□□□ -0.17
CCDC39-202ENST00000471307 WBP1LQ9NX94 342 aa13.97□□□□□ -0.17
CCDC39-202ENST00000471307 PPP4CP60510 307 aa13.96□□□□□ -0.17
CCDC39-202ENST00000471307 SWT1Q5T5J6 900 aaKnown RBP13.96□□□□□ -0.17
CCDC39-202ENST00000471307 METTL3Q86U44 580 aaKnown RBP13.96□□□□□ -0.17
CCDC39-202ENST00000471307 TMEM134Q9H6X4 195 aa13.96□□□□□ -0.17
CCDC39-202ENST00000471307 RCCD1A6NED2 376 aa13.95□□□□□ -0.18
CCDC39-202ENST00000471307 FAM161AQ3B820 660 aa13.95□□□□□ -0.18
CCDC39-202ENST00000471307 MAP2K5Q13163 448 aa13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms