RNA–Protein interactions for RNA: ENST00000471165.1

CLIP4-209, Transcript of CAP-Gly domain containing linker protein family member 4, humanhuman

TSL 2

Gene CLIP4, Length 377 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4-209ENST00000471165 KIAA1468Q9P260 1216 aa11.82□□□□□ -0.52
CLIP4-209ENST00000471165 CRISPLD2Q9H0B8 497 aa11.8□□□□□ -0.52
CLIP4-209ENST00000471165 TSR3Q9UJK0 312 aaKnown RBP11.8□□□□□ -0.52
CLIP4-209ENST00000471165 V9GY48 417 aaPredicted RBP11.79□□□□□ -0.52
CLIP4-209ENST00000471165 SEPT9Q9UHD8 586 aaPredicted RBP11.78□□□□□ -0.52
CLIP4-209ENST00000471165 HPS5Q9UPZ3 1129 aa11.78□□□□□ -0.52
CLIP4-209ENST00000471165 PCDHGA10Q9Y5H3 936 aa11.77□□□□□ -0.53
CLIP4-209ENST00000471165 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.76□□□□□ -0.53
CLIP4-209ENST00000471165 PDZRN3Q9UPQ7 1066 aa11.75□□□□□ -0.53
CLIP4-209ENST00000471165 ONECUT3O60422 494 aaPredicted RBP11.73□□□□□ -0.53
CLIP4-209ENST00000471165 LRCH3Q96II8 777 aa11.73□□□□□ -0.53
CLIP4-209ENST00000471165 FAM98CQ17RN3 349 aaKnown RBP11.72□□□□□ -0.53
CLIP4-209ENST00000471165 TJAP1Q5JTD0 557 aa11.72□□□□□ -0.53
CLIP4-209ENST00000471165 PPP1R18Q6NYC8 613 aa11.71□□□□□ -0.53
CLIP4-209ENST00000471165 FBXW7Q969H0 707 aa11.69□□□□□ -0.54
CLIP4-209ENST00000471165 MAP3K9P80192 1104 aa11.68□□□□□ -0.54
CLIP4-209ENST00000471165 PKD2Q13563 968 aa11.68□□□□□ -0.54
CLIP4-209ENST00000471165 TYW1BQ6NUM6 668 aa11.68□□□□□ -0.54
CLIP4-209ENST00000471165 NCKAP5LQ9HCH0 1330 aa11.66□□□□□ -0.54
CLIP4-209ENST00000471165 TRIM6-TRIM34B2RNG4 842 aa11.65□□□□□ -0.54
CLIP4-209ENST00000471165 PPP4CP60510 307 aa11.64□□□□□ -0.55
CLIP4-209ENST00000471165 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.64□□□□□ -0.55
CLIP4-209ENST00000471165 PHF14O94880 888 aa11.63□□□□□ -0.55
CLIP4-209ENST00000471165 PDE4AP27815 886 aa11.63□□□□□ -0.55
CLIP4-209ENST00000471165 MTRQ99707 1265 aa11.62□□□□□ -0.55
CLIP4-209ENST00000471165 IL21Q9HBE4 155 aa11.62□□□□□ -0.55
CLIP4-209ENST00000471165 HS6ST3Q8IZP7 471 aa11.61□□□□□ -0.55
CLIP4-209ENST00000471165 C6orf132Q5T0Z8 1188 aa11.6□□□□□ -0.55
CLIP4-209ENST00000471165 POTECB2RU33 542 aa11.59□□□□□ -0.55
CLIP4-209ENST00000471165 ZNF516Q92618 1163 aa11.56□□□□□ -0.56
CLIP4-209ENST00000471165 EMILIN3Q9NT22 766 aa11.56□□□□□ -0.56
CLIP4-209ENST00000471165 LCE2AQ5TA79 106 aaPredicted RBP11.55□□□□□ -0.56
CLIP4-209ENST00000471165 TREML4Q6UXN2 200 aa11.55□□□□□ -0.56
CLIP4-209ENST00000471165 MYT1Q01538 1121 aa11.54□□□□□ -0.56
CLIP4-209ENST00000471165 DDX27Q96GQ7 796 aaKnown RBP11.54□□□□□ -0.56
CLIP4-209ENST00000471165 LARP6Q9BRS8 491 aaKnown RBP11.54□□□□□ -0.56
CLIP4-209ENST00000471165 TRIM67Q6ZTA4 783 aa11.52□□□□□ -0.57
CLIP4-209ENST00000471165 PKDCCQ504Y2 493 aa11.51□□□□□ -0.57
CLIP4-209ENST00000471165 NKX2-3Q8TAU0 364 aa11.51□□□□□ -0.57
CLIP4-209ENST00000471165 EPAS1Q99814 870 aa11.51□□□□□ -0.57
CLIP4-209ENST00000471165 SAMD7Q7Z3H4 446 aa11.5□□□□□ -0.57
CLIP4-209ENST00000471165 NKX1-1Q15270 411 aaPredicted RBP11.49□□□□□ -0.57
CLIP4-209ENST00000471165 PACS2Q86VP3 889 aa11.49□□□□□ -0.57
CLIP4-209ENST00000471165 DGAT1O75907 488 aa11.48□□□□□ -0.57
CLIP4-209ENST00000471165 TSKSQ9UJT2 592 aa11.48□□□□□ -0.57
CLIP4-209ENST00000471165 GGCXP38435 758 aa11.47□□□□□ -0.57
CLIP4-209ENST00000471165 MFSD10Q14728 455 aa11.46□□□□□ -0.57
CLIP4-209ENST00000471165 RBM33Q96EV2 1170 aaKnown RBP11.46□□□□□ -0.57
CLIP4-209ENST00000471165 RYDENQ9NUL5 291 aaKnown RBP11.46□□□□□ -0.57
CLIP4-209ENST00000471165 CHGAP10645 457 aaKnown RBP11.42□□□□□ -0.58
CLIP4-209ENST00000471165 TMUB1Q9BVT8 246 aa11.42□□□□□ -0.58
CLIP4-209ENST00000471165 SMAPO00193 183 aa11.41□□□□□ -0.58
CLIP4-209ENST00000471165 APLP1P51693 650 aa11.41□□□□□ -0.58
CLIP4-209ENST00000471165 DNAJC5Q9H3Z4 198 aa11.41□□□□□ -0.58
CLIP4-209ENST00000471165 STK17AQ9UEE5 414 aa11.39□□□□□ -0.59
CLIP4-209ENST00000471165 SLC19A1P41440 591 aa11.38□□□□□ -0.59
CLIP4-209ENST00000471165 EMID1Q96A84 441 aaPredicted RBP11.38□□□□□ -0.59
CLIP4-209ENST00000471165 LOC100996750A0A140TA64 210 aa11.37□□□□□ -0.59
CLIP4-209ENST00000471165 PRR20EP86478 221 aa11.37□□□□□ -0.59
CLIP4-209ENST00000471165 PRR20CP86479 221 aa11.37□□□□□ -0.59
CLIP4-209ENST00000471165 PRR20DP86480 221 aa11.37□□□□□ -0.59
CLIP4-209ENST00000471165 PRR20BP86481 221 aa11.37□□□□□ -0.59
CLIP4-209ENST00000471165 PRR20AP86496 221 aa11.37□□□□□ -0.59
CLIP4-209ENST00000471165 KRTAP4-6Q9BYQ5 205 aa11.37□□□□□ -0.59
CLIP4-209ENST00000471165 FAM187AA6NFU0 413 aa11.35□□□□□ -0.59
CLIP4-209ENST00000471165 COPS2P61201 443 aa11.35□□□□□ -0.59
CLIP4-209ENST00000471165 TSR1Q2NL82 804 aaKnown RBP11.34□□□□□ -0.59
CLIP4-209ENST00000471165 C3orf80F5H4A9 247 aa11.33□□□□□ -0.6
CLIP4-209ENST00000471165 ST8SIA5O15466 376 aa11.33□□□□□ -0.6
CLIP4-209ENST00000471165 RNF40O75150 1001 aa11.33□□□□□ -0.6
CLIP4-209ENST00000471165 SPRYD7Q5W111 196 aa11.33□□□□□ -0.6
CLIP4-209ENST00000471165 DDX12PQ92771 950 aa11.33□□□□□ -0.6
CLIP4-209ENST00000471165 FAM198AQ9UFP1 575 aa11.33□□□□□ -0.6
CLIP4-209ENST00000471165 WFS1O76024 890 aa11.32□□□□□ -0.6
CLIP4-209ENST00000471165 ZNF598Q86UK7 904 aaKnown RBP11.32□□□□□ -0.6
CLIP4-209ENST00000471165 CDCA7LQ96GN5 454 aa11.32□□□□□ -0.6
CLIP4-209ENST00000471165 RNF223E7ERA6 249 aa11.31□□□□□ -0.6
CLIP4-209ENST00000471165 AAASQ9NRG9 546 aa11.31□□□□□ -0.6
CLIP4-209ENST00000471165 EN1Q05925 392 aaPredicted RBP11.3□□□□□ -0.6
CLIP4-209ENST00000471165 ZPR1O75312 459 aa11.29□□□□□ -0.6
CLIP4-209ENST00000471165 TATDN2Q93075 761 aa11.29□□□□□ -0.6
CLIP4-209ENST00000471165 DPYSL4O14531 572 aa11.28□□□□□ -0.6
CLIP4-209ENST00000471165 MAP3K7O43318 606 aa11.28□□□□□ -0.6
CLIP4-209ENST00000471165 PRSS12P56730 875 aa11.28□□□□□ -0.6
CLIP4-209ENST00000471165 PNMA3Q9UL41 463 aa11.28□□□□□ -0.6
CLIP4-209ENST00000471165 NBPF26B4DH59 902 aa11.26□□□□□ -0.61
CLIP4-209ENST00000471165 TNFRSF10AO00220 468 aa11.26□□□□□ -0.61
CLIP4-209ENST00000471165 WIPF1O43516 503 aa11.26□□□□□ -0.61
CLIP4-209ENST00000471165 HDGFP51858 240 aaKnown RBP11.26□□□□□ -0.61
CLIP4-209ENST00000471165 GDF9O60383 454 aa11.25□□□□□ -0.61
CLIP4-209ENST00000471165 INSM1Q01101 510 aaPredicted RBP11.25□□□□□ -0.61
CLIP4-209ENST00000471165 NBR1Q14596 966 aa11.25□□□□□ -0.61
CLIP4-209ENST00000471165 ZNF697Q5TEC3 545 aa11.25□□□□□ -0.61
CLIP4-209ENST00000471165 LIAT1Q6ZQX7 453 aa11.23□□□□□ -0.61
CLIP4-209ENST00000471165 NFX1Q12986 1120 aaKnown RBP11.22□□□□□ -0.61
CLIP4-209ENST00000471165 CAMK2BQ13554 666 aa11.22□□□□□ -0.61
CLIP4-209ENST00000471165 NECTIN2Q92692 538 aa11.22□□□□□ -0.61
CLIP4-209ENST00000471165 GTPBP6O43824 516 aaPredicted RBP11.2□□□□□ -0.62
CLIP4-209ENST00000471165 ANKLE1Q8NAG6 615 aa11.2□□□□□ -0.62
CLIP4-209ENST00000471165 NUDT18Q6ZVK8 323 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms