RNA–Protein interactions for RNA: ENST00000471165.1

CLIP4-209, Transcript of CAP-Gly domain containing linker protein family member 4, humanhuman

TSL 2

Gene CLIP4, Length 377 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4-209ENST00000471165 AEBP2Q6ZN18 517 aaPredicted RBP31.43■■■□□ 2.62
CLIP4-209ENST00000471165 CHIC1Q5VXU3 224 aa29.32■■■□□ 2.28
CLIP4-209ENST00000471165 SENP3Q9H4L4 574 aaPredicted RBP26.91■■□□□ 1.9
CLIP4-209ENST00000471165 PHF23Q9BUL5 403 aaPredicted RBP26.45■■□□□ 1.82
CLIP4-209ENST00000471165 FOXD1Q16676 465 aa25.21■■□□□ 1.63
CLIP4-209ENST00000471165 POTEDQ86YR6 584 aa24.81■■□□□ 1.56
CLIP4-209ENST00000471165 MSH5O43196 834 aa23.9■■□□□ 1.42
CLIP4-209ENST00000471165 PIAS4Q8N2W9 510 aaPredicted RBP23.34■■□□□ 1.33
CLIP4-209ENST00000471165 PPP6R1Q9UPN7 881 aa22.93■■□□□ 1.26
CLIP4-209ENST00000471165 ADRA2BP18089 450 aa22.8■■□□□ 1.24
CLIP4-209ENST00000471165 PLPPR3Q6T4P5 718 aa22.76■■□□□ 1.23
CLIP4-209ENST00000471165 DMRT2Q9Y5R5 561 aa21.21■□□□□ 0.99
CLIP4-209ENST00000471165 MAPK8IP2Q13387 824 aaPredicted RBP21.2■□□□□ 0.98
CLIP4-209ENST00000471165 CACNB1Q02641 598 aaPredicted RBP21.05■□□□□ 0.96
CLIP4-209ENST00000471165 SCAF1Q9H7N4 1312 aaKnown RBP20.81■□□□□ 0.92
CLIP4-209ENST00000471165 DCAF8L1A6NGE4 600 aa20.4■□□□□ 0.86
CLIP4-209ENST00000471165 RNF39Q9H2S5 420 aa20.33■□□□□ 0.85
CLIP4-209ENST00000471165 HOXD11P31277 338 aaPredicted RBP20.1■□□□□ 0.81
CLIP4-209ENST00000471165 C1QBPQ07021 282 aaKnown RBP19.97■□□□□ 0.79
CLIP4-209ENST00000471165 PPP4R3CPQ6ZMV5 832 aa19.85■□□□□ 0.77
CLIP4-209ENST00000471165 RNF216Q9NWF9 866 aaPredicted RBP19.71■□□□□ 0.75
CLIP4-209ENST00000471165 CNKSR2Q8WXI2 1034 aa19.66■□□□□ 0.74
CLIP4-209ENST00000471165 DNAJC5BQ9UF47 199 aa19.55■□□□□ 0.72
CLIP4-209ENST00000471165 POTEHQ6S545 545 aa19.27■□□□□ 0.68
CLIP4-209ENST00000471165 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.15■□□□□ 0.66
CLIP4-209ENST00000471165 NCBP3Q53F19 620 aaKnown RBP18.81■□□□□ 0.6
CLIP4-209ENST00000471165 DSG3P32926 999 aa18.75■□□□□ 0.59
CLIP4-209ENST00000471165 CAPN15O75808 1086 aa18.66■□□□□ 0.58
CLIP4-209ENST00000471165 SPINK5Q9NQ38 1064 aaPredicted RBP18.66■□□□□ 0.58
CLIP4-209ENST00000471165 U3KPZ7 1027 aaPredicted RBP18.66■□□□□ 0.58
CLIP4-209ENST00000471165 NPM3O75607 178 aaKnown RBP18.55■□□□□ 0.56
CLIP4-209ENST00000471165 ABCB7O75027 752 aa18.15■□□□□ 0.5
CLIP4-209ENST00000471165 TRHP20396 242 aaPredicted RBP18.15■□□□□ 0.5
CLIP4-209ENST00000471165 ZNF219Q9P2Y4 722 aaPredicted RBP18.06■□□□□ 0.48
CLIP4-209ENST00000471165 APLP2Q06481 763 aa18■□□□□ 0.47
CLIP4-209ENST00000471165 SLC4A2P04920 1241 aa17.96■□□□□ 0.47
CLIP4-209ENST00000471165 RBM42Q9BTD8 480 aaKnown RBP17.88■□□□□ 0.45
CLIP4-209ENST00000471165 CHRDL2Q6WN34 429 aa17.86■□□□□ 0.45
CLIP4-209ENST00000471165 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.79■□□□□ 0.44
CLIP4-209ENST00000471165 HNRNPUL2Q1KMD3 747 aaKnown RBP17.79■□□□□ 0.44
CLIP4-209ENST00000471165 SAMD1Q6SPF0 538 aaPredicted RBP17.66■□□□□ 0.42
CLIP4-209ENST00000471165 SP7Q8TDD2 431 aaPredicted RBP17.66■□□□□ 0.42
CLIP4-209ENST00000471165 POLA2Q14181 598 aa17.46■□□□□ 0.39
CLIP4-209ENST00000471165 KCNA4P22459 653 aa17.45■□□□□ 0.38
CLIP4-209ENST00000471165 AKT1S1Q96B36 256 aa17.3■□□□□ 0.36
CLIP4-209ENST00000471165 PIP4P2Q8N4L2 257 aa17.26■□□□□ 0.35
CLIP4-209ENST00000471165 HAX1O00165 279 aa17.17■□□□□ 0.34
CLIP4-209ENST00000471165 MYCNP04198 464 aaPredicted RBP17.16■□□□□ 0.34
CLIP4-209ENST00000471165 REM2Q8IYK8 340 aaPredicted RBP17.16■□□□□ 0.34
CLIP4-209ENST00000471165 FXR2P51116 673 aaKnown RBP eCLIP17.01■□□□□ 0.31
CLIP4-209ENST00000471165 ZBTB12Q9Y330 459 aaPredicted RBP17.01■□□□□ 0.31
CLIP4-209ENST00000471165 PITPNM1O00562 1244 aa16.99■□□□□ 0.31
CLIP4-209ENST00000471165 OSCARQ8IYS5 282 aa16.95■□□□□ 0.3
CLIP4-209ENST00000471165 EVX2Q03828 476 aa16.92■□□□□ 0.3
CLIP4-209ENST00000471165 ATF5Q9Y2D1 282 aaPredicted RBP16.88■□□□□ 0.29
CLIP4-209ENST00000471165 LHX8Q68G74 356 aa16.56■□□□□ 0.24
CLIP4-209ENST00000471165 PRKAR2AP13861 404 aaKnown RBP16.53■□□□□ 0.24
CLIP4-209ENST00000471165 FOXD4L1Q9NU39 408 aa16.53■□□□□ 0.24
CLIP4-209ENST00000471165 C19orf67A6NJJ6 358 aa16.5■□□□□ 0.23
CLIP4-209ENST00000471165 GABBR2O75899 941 aa16.48■□□□□ 0.23
CLIP4-209ENST00000471165 SPDYE2BA6NHP3 402 aa16.43■□□□□ 0.22
CLIP4-209ENST00000471165 SPDYE6P0CI01 402 aa16.43■□□□□ 0.22
CLIP4-209ENST00000471165 SPDYE2Q495Y8 402 aa16.43■□□□□ 0.22
CLIP4-209ENST00000471165 CLEC11AQ9Y240 323 aa16.38■□□□□ 0.21
CLIP4-209ENST00000471165 SPDYE1Q8NFV5 336 aaPredicted RBP16.36■□□□□ 0.21
CLIP4-209ENST00000471165 SLC4A1APQ9BWU0 796 aaKnown RBP16.28■□□□□ 0.2
CLIP4-209ENST00000471165 FBLN2P98095 1184 aa16.24■□□□□ 0.19
CLIP4-209ENST00000471165 PLSCR2Q9NRY7 297 aa16.22■□□□□ 0.19
CLIP4-209ENST00000471165 CHADLQ6NUI6 762 aa16.18■□□□□ 0.18
CLIP4-209ENST00000471165 POTEIP0CG38 1075 aa16.14■□□□□ 0.17
CLIP4-209ENST00000471165 SSUH2Q9Y2M2 353 aa16.12■□□□□ 0.17
CLIP4-209ENST00000471165 ZNF692Q9BU19 519 aaPredicted RBP16.1■□□□□ 0.17
CLIP4-209ENST00000471165 ATXN8OSP0DMR3 200 aa16.09■□□□□ 0.17
CLIP4-209ENST00000471165 MKRN4PQ13434 485 aaPredicted RBP16.05■□□□□ 0.16
CLIP4-209ENST00000471165 ZBTB22O15209 634 aa16.03■□□□□ 0.16
CLIP4-209ENST00000471165 PRR29P0C7W0 189 aa15.99■□□□□ 0.15
CLIP4-209ENST00000471165 CD44P16070 742 aaKnown RBP15.96■□□□□ 0.15
CLIP4-209ENST00000471165 CLCN6P51797 869 aa15.88■□□□□ 0.13
CLIP4-209ENST00000471165 PABPN1Q86U42 306 aaKnown RBP eCLIP15.85■□□□□ 0.13
CLIP4-209ENST00000471165 FARP1Q9Y4F1 1045 aaPredicted RBP15.84■□□□□ 0.13
CLIP4-209ENST00000471165 DCBLD2Q96PD2 775 aa15.83■□□□□ 0.12
CLIP4-209ENST00000471165 OTUD5Q96G74 571 aa15.7■□□□□ 0.1
CLIP4-209ENST00000471165 ZNF579Q8NAF0 562 aaKnown RBP15.67■□□□□ 0.1
CLIP4-209ENST00000471165 POTEMA6NI47 508 aa15.64■□□□□ 0.09
CLIP4-209ENST00000471165 ZRANB1Q9UGI0 708 aa15.61■□□□□ 0.09
CLIP4-209ENST00000471165 POTEB2H3BUK9 544 aa15.59■□□□□ 0.09
CLIP4-209ENST00000471165 POTEGQ6S5H5 508 aa15.57■□□□□ 0.08
CLIP4-209ENST00000471165 GALR2O43603 387 aaPredicted RBP15.56■□□□□ 0.08
CLIP4-209ENST00000471165 CREBZFQ9NS37 354 aa15.4■□□□□ 0.06
CLIP4-209ENST00000471165 PCDH10Q9P2E7 1040 aa15.4■□□□□ 0.06
CLIP4-209ENST00000471165 PELP1Q8IZL8 1130 aaKnown RBP15.34■□□□□ 0.05
CLIP4-209ENST00000471165 PHF12Q96QT6 1004 aa15.33■□□□□ 0.04
CLIP4-209ENST00000471165 PAK3O75914 559 aaPredicted RBP15.26■□□□□ 0.03
CLIP4-209ENST00000471165 POTEJP0CG39 1038 aa15.22■□□□□ 0.03
CLIP4-209ENST00000471165 METRNQ9UJH8 293 aa15.21■□□□□ 0.03
CLIP4-209ENST00000471165 STAG3Q9UJ98 1225 aa15.2■□□□□ 0.02
CLIP4-209ENST00000471165 LCE2DQ5TA82 110 aaPredicted RBP15.19■□□□□ 0.02
CLIP4-209ENST00000471165 ASTLQ6HA08 431 aaPredicted RBP15.16■□□□□ 0.02
CLIP4-209ENST00000471165 C7P10643 843 aa15.14■□□□□ 0.01
CLIP4-209ENST00000471165 MAMSTRQ6ZN01 415 aa15.14■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms