RNA–Protein interactions for RNA: ENST00000465727.5

SDF4-205, Transcript of stromal cell derived factor 4, humanhuman

TSL 2

Gene SDF4, Length 2,095 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-205ENST00000465727 ARID3CA6NKF2 412 aa26.13■■□□□ 1.77
SDF4-205ENST00000465727 IL27Q8NEV9 243 aa26.13■■□□□ 1.77
SDF4-205ENST00000465727 PARD3Q8TEW0 1356 aa26.13■■□□□ 1.77
SDF4-205ENST00000465727 KDM5DQ9BY66 1539 aa26.12■■□□□ 1.77
SDF4-205ENST00000465727 ANO8Q9HCE9 1232 aaPredicted RBP26.12■■□□□ 1.77
SDF4-205ENST00000465727 LAS1LQ9Y4W2 734 aaKnown RBP26.12■■□□□ 1.77
SDF4-205ENST00000465727 DISP1Q96F81 1524 aa26.12■■□□□ 1.77
SDF4-205ENST00000465727 ANKRD50Q9ULJ7 1429 aa26.11■■□□□ 1.77
SDF4-205ENST00000465727 CFDP1Q9UEE9 299 aaPredicted RBP26.1■■□□□ 1.77
SDF4-205ENST00000465727 KIAA0586Q9BVV6 1533 aa26.09■■□□□ 1.77
SDF4-205ENST00000465727 GPATCH8Q9UKJ3 1502 aaKnown RBP26.09■■□□□ 1.77
SDF4-205ENST00000465727 CEP170Q5SW79 1584 aa26.09■■□□□ 1.77
SDF4-205ENST00000465727 SENP3-EIF4A1A0A087X0R7 540 aa26.08■■□□□ 1.77
SDF4-205ENST00000465727 ST20-MTHFSA0A0A6YYL1 179 aa26.08■■□□□ 1.77
SDF4-205ENST00000465727 PLEKHH2Q8IVE3 1493 aa26.07■■□□□ 1.76
SDF4-205ENST00000465727 SHANK2Q9UPX8 1470 aa26.07■■□□□ 1.76
SDF4-205ENST00000465727 OSCARQ8IYS5 282 aa26.05■■□□□ 1.76
SDF4-205ENST00000465727 SALL2Q9Y467 1007 aaPredicted RBP26.05■■□□□ 1.76
SDF4-205ENST00000465727 BLMP54132 1417 aaPredicted RBP26.04■■□□□ 1.76
SDF4-205ENST00000465727 PRG4Q92954 1404 aaPredicted RBP26.02■■□□□ 1.76
SDF4-205ENST00000465727 NUP155O75694 1391 aa25.99■■□□□ 1.75
SDF4-205ENST00000465727 CHD1O14646 1710 aa25.98■■□□□ 1.75
SDF4-205ENST00000465727 PTPRGP23470 1445 aa25.98■■□□□ 1.75
SDF4-205ENST00000465727 TRPM1Q7Z4N2 1603 aa25.98■■□□□ 1.75
SDF4-205ENST00000465727 GSE1Q14687 1217 aa25.97■■□□□ 1.75
SDF4-205ENST00000465727 CDC42BPAQ5VT25 1732 aa25.96■■□□□ 1.75
SDF4-205ENST00000465727 LAMC1P11047 1609 aa25.96■■□□□ 1.75
SDF4-205ENST00000465727 PER1O15534 1290 aaPredicted RBP25.93■■□□□ 1.74
SDF4-205ENST00000465727 CDCA7LQ96GN5 454 aa25.93■■□□□ 1.74
SDF4-205ENST00000465727 C9orf84Q5VXU9 1444 aa25.93■■□□□ 1.74
SDF4-205ENST00000465727 CRBNQ96SW2 442 aa25.92■■□□□ 1.74
SDF4-205ENST00000465727 DCAF11Q8TEB1 546 aa25.92■■□□□ 1.74
SDF4-205ENST00000465727 RTN4Q9NQC3 1192 aaKnown RBP25.91■■□□□ 1.74
SDF4-205ENST00000465727 COL17A1Q9UMD9 1497 aaPredicted RBP25.9■■□□□ 1.74
SDF4-205ENST00000465727 NFKBIBQ15653 356 aa25.9■■□□□ 1.74
SDF4-205ENST00000465727 KDM2BQ8NHM5 1336 aa25.9■■□□□ 1.74
SDF4-205ENST00000465727 PRAG1Q86YV5 1406 aa25.89■■□□□ 1.74
SDF4-205ENST00000465727 ZNF777Q9ULD5 760 aaPredicted RBP25.89■■□□□ 1.74
SDF4-205ENST00000465727 KDM2AQ9Y2K7 1162 aa25.89■■□□□ 1.74
SDF4-205ENST00000465727 GPRASP1Q5JY77 1395 aa25.88■■□□□ 1.73
SDF4-205ENST00000465727 MAGI1Q96QZ7 1491 aaPredicted RBP25.88■■□□□ 1.73
SDF4-205ENST00000465727 FBLN2P98095 1184 aa25.88■■□□□ 1.73
SDF4-205ENST00000465727 CENPQQ7L2Z9 268 aaPredicted RBP25.88■■□□□ 1.73
SDF4-205ENST00000465727 DAXXQ9UER7 740 aaPredicted RBP25.88■■□□□ 1.73
SDF4-205ENST00000465727 PLIN1O60240 522 aa25.87■■□□□ 1.73
SDF4-205ENST00000465727 GRIN2AQ12879 1464 aa25.84■■□□□ 1.73
SDF4-205ENST00000465727 PRDM15P57071 1507 aaPredicted RBP25.84■■□□□ 1.73
SDF4-205ENST00000465727 ARHGEF5Q12774 1597 aa25.83■■□□□ 1.72
SDF4-205ENST00000465727 FAM161AQ3B820 660 aa25.83■■□□□ 1.72
SDF4-205ENST00000465727 PLB1Q6P1J6 1458 aa25.81■■□□□ 1.72
SDF4-205ENST00000465727 EIF2AK4Q9P2K8 1649 aaKnown RBP25.8■■□□□ 1.72
SDF4-205ENST00000465727 SYNJ2O15056 1496 aa25.8■■□□□ 1.72
SDF4-205ENST00000465727 ABCC10Q5T3U5 1492 aa25.8■■□□□ 1.72
SDF4-205ENST00000465727 FAM135AQ9P2D6 1515 aa25.79■■□□□ 1.72
SDF4-205ENST00000465727 TSPY4P0CV99 314 aa25.79■■□□□ 1.72
SDF4-205ENST00000465727 TSPY10P0CW01 314 aa25.79■■□□□ 1.72
SDF4-205ENST00000465727 BRPF3Q9ULD4 1205 aa25.78■■□□□ 1.72
SDF4-205ENST00000465727 CCDC144AA2RUR9 1427 aa25.77■■□□□ 1.72
SDF4-205ENST00000465727 CHMP7Q8WUX9 453 aaPredicted RBP25.77■■□□□ 1.72
SDF4-205ENST00000465727 GOLGA6L2Q8N9W4 650 aaPredicted RBP25.76■■□□□ 1.71
SDF4-205ENST00000465727 FRAT1Q92837 279 aaPredicted RBP25.76■■□□□ 1.71
SDF4-205ENST00000465727 C8orf34Q49A92 452 aa25.75■■□□□ 1.71
SDF4-205ENST00000465727 CLASP1Q7Z460 1538 aa25.74■■□□□ 1.71
SDF4-205ENST00000465727 ERBINQ96RT1 1412 aa25.74■■□□□ 1.71
SDF4-205ENST00000465727 CC2D1BQ5T0F9 858 aaKnown RBP25.73■■□□□ 1.71
SDF4-205ENST00000465727 SKAP1Q86WV1 359 aa25.73■■□□□ 1.71
SDF4-205ENST00000465727 TESK2Q96S53 571 aa25.73■■□□□ 1.71
SDF4-205ENST00000465727 RIMBP3CA6NJZ7 1639 aa25.73■■□□□ 1.71
SDF4-205ENST00000465727 RIMBP3BA6NNM3 1639 aa25.73■■□□□ 1.71
SDF4-205ENST00000465727 RIMBP3Q9UFD9 1639 aa25.73■■□□□ 1.71
SDF4-205ENST00000465727 DISP3Q9P2K9 1392 aa25.73■■□□□ 1.71
SDF4-205ENST00000465727 C20orf194Q5TEA3 1177 aa25.72■■□□□ 1.71
SDF4-205ENST00000465727 NUP160Q12769 1436 aa25.71■■□□□ 1.71
SDF4-205ENST00000465727 VIRMAQ69YN4 1812 aaKnown RBP25.71■■□□□ 1.71
SDF4-205ENST00000465727 PANK3Q9H999 370 aa25.71■■□□□ 1.71
SDF4-205ENST00000465727 CARMIL2Q6F5E8 1435 aa25.7■■□□□ 1.71
SDF4-205ENST00000465727 A2MP01023 1474 aa25.7■■□□□ 1.7
SDF4-205ENST00000465727 EIF3AQ14152 1382 aaKnown RBP25.69■■□□□ 1.7
SDF4-205ENST00000465727 TMF1P82094 1093 aa25.69■■□□□ 1.7
SDF4-205ENST00000465727 DUSP27Q5VZP5 1158 aa25.69■■□□□ 1.7
SDF4-205ENST00000465727 PLEKHD1A6NEE1 506 aa25.68■■□□□ 1.7
SDF4-205ENST00000465727 MYO5CQ9NQX4 1742 aa25.68■■□□□ 1.7
SDF4-205ENST00000465727 SLC4A3P48751 1232 aa25.68■■□□□ 1.7
SDF4-205ENST00000465727 ABCA8O94911 1581 aa25.68■■□□□ 1.7
SDF4-205ENST00000465727 UNC13BO14795 1591 aa25.67■■□□□ 1.7
SDF4-205ENST00000465727 CCDC141Q6ZP82 1450 aa25.67■■□□□ 1.7
SDF4-205ENST00000465727 ZNF521Q96K83 1311 aa25.67■■□□□ 1.7
SDF4-205ENST00000465727 NBPF1Q3BBV0 1214 aa25.67■■□□□ 1.7
SDF4-205ENST00000465727 ZBTB4Q9P1Z0 1013 aaPredicted RBP25.66■■□□□ 1.7
SDF4-205ENST00000465727 ADAMTS8Q9UP79 889 aa25.65■■□□□ 1.7
SDF4-205ENST00000465727 RNF17Q9BXT8 1623 aaKnown RBP25.64■■□□□ 1.7
SDF4-205ENST00000465727 PLEKHH1Q9ULM0 1364 aa25.64■■□□□ 1.7
SDF4-205ENST00000465727 GOLGA2Q08379 1002 aa25.64■■□□□ 1.69
SDF4-205ENST00000465727 WDR43Q15061 677 aaKnown RBP eCLIP25.62■■□□□ 1.69
SDF4-205ENST00000465727 RSPH4AQ5TD94 716 aa25.62■■□□□ 1.69
SDF4-205ENST00000465727 FAM43AQ8N2R8 423 aa25.62■■□□□ 1.69
SDF4-205ENST00000465727 PLA2R1Q13018 1463 aa25.61■■□□□ 1.69
SDF4-205ENST00000465727 FRAT2O75474 233 aaPredicted RBP25.6■■□□□ 1.69
SDF4-205ENST00000465727 ATP10BO94823 1461 aa25.59■■□□□ 1.69
SDF4-205ENST00000465727 IQGAP3Q86VI3 1631 aa25.58■■□□□ 1.69
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms